View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8419_low_1 (Length: 993)
Name: NF8419_low_1
Description: NF8419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8419_low_1 |
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| [»] chr7 (7 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 607; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 362 - 993
Target Start/End: Original strand, 354845 - 355476
Alignment:
| Q |
362 |
gtgagtgtttgttaacttgatttttagtagttttgttattttaacgtcgtggatgcacaggtgttcctttggaaatcgatgaatcgactaaaatccgtac |
461 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
354845 |
gtgagtgtttgttaacttgatttttagtagttttgttattttaacgtcgtggatgcacaggtgttcctttggaaatcgatgaatcgactaaaatccgtac |
354944 |
T |
|
| Q |
462 |
ctttggtcactatgctcgcatacttattgatttggatttgtcgcaaccaatattgaacaacttgcttgtgggaagagaagagtccgcnnnnnnngttaaa |
561 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
354945 |
ctttggtcactatgctcgcatacttattgatttggatttgtcgcaaccaatattgaacaacttgcttgtgggaagagaagagtccgctttttttgttaaa |
355044 |
T |
|
| Q |
562 |
atagaatatgaaaaacaaccgttgttctgcaataactgcaaacacataaggcactctatccaaaactgtaagaaaattgctcaaaattccatagatttgt |
661 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
355045 |
atagaatatgaaaaacaaccgttgttctgcaataactgcaaacacataaggcactctatccaaaactgtaagaaaattgctcaaaattccatagatttgt |
355144 |
T |
|
| Q |
662 |
ttaaagagaataaggaaaatactgtcaccaagtctcatcattacggtaagtctaatgttaggtttaagcatgttgatagaccctctgaaacagataatct |
761 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
355145 |
ttaaagagaataaggaaaatactgtcaccaagtctcatcattacggtaagtctaatgttaggtttaagcatattgatagaccctctgaaacagataatct |
355244 |
T |
|
| Q |
762 |
tgctggaagcctgaaaactaagctgaatatgattcatgacacgcatctggataatagaattgatgttatcaagggtagagcaaagttagctgaacaatca |
861 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
355245 |
tgctggaagcctgaaaactaagctgaatatgattcatgacacgcatctggataatagaattgatgttatcaagggtagagcaaagttagctgaacaatca |
355344 |
T |
|
| Q |
862 |
ggtgcaatgattggctcggctaagcaatctaaggaggtttcaaccttagcattagattcaacattgaaatttgaaatctggaattgcagcaggtaaatgc |
961 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
355345 |
ggtgcaatgattggctcggctaagcaatctaaggaggtttcaaccttagcattagattcaacattgaaatttgaaatctggaattgcagcaggtaaatgc |
355444 |
T |
|
| Q |
962 |
tctgttgattttggtgttaatatgcatcattt |
993 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
355445 |
tctgttgattttggtgttaatatgcatcattt |
355476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 362 - 930
Target Start/End: Original strand, 10581244 - 10581816
Alignment:
| Q |
362 |
gtgagtgtttgttaacttgatttttagtagttttgttattttaacgtcgtggatgcacaggtgttcctttggaaatcgatgaatcgactaaaatccgtac |
461 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||| | |||||||| ||||||||||||||||||| |||||||| |||||||||| || |
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| T |
10581244 |
gtgagtgtttgttaacttgattttttttagttttgttattttaacttagtggatgcgcaggtgttcctttggaaattgatgaatccactaaaatccatat |
10581343 |
T |
|
| Q |
462 |
ctttggtca-ctatgctcgcatacttattgatttggatttgtcgcaaccaatattgaacaacttgcttgtgggaagagaagagtccgcnnnnnnn-gtta |
559 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||| |||||||| || ||| |||| |
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| T |
10581344 |
ctttggtcaactatgctcgcatacttacagatttggatttgtcgcagccaatattcaacaacttgcttgtggaaagagaagggtacgcttttttttgtta |
10581443 |
T |
|
| Q |
560 |
aaatagaatatgaaaaacaaccgttgttctgcaataactgcaaacacataaggcactctatccaaaactgtaagaaaattgctcaaaattccatagattt |
659 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
10581444 |
aaatagaatatgaaaaacaaccgttgttctgcaataactgcaaacacataagtcactctatccaaaactgtaagaaaattgctcaaaattccatggattt |
10581543 |
T |
|
| Q |
660 |
gtttaaagagaataaggaaaatactgtcaccaagtctcatcattacggtaagtctaatgttaggtttaagcatgttgatagaccctctgaaacagataat |
759 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
10581544 |
gtttaaagataataaggaaaatactgtcaccaagtctcatcatcagggtaagtctaatgttgggtttaagcatgttgatagaccctctgagacagataat |
10581643 |
T |
|
| Q |
760 |
cttgctggaagcctgaaaactaagctgaatatgattcatgacacgcatctggataat--agaattgatg-ttatcaagggtagagcaaagttagctgaac |
856 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||| ||||||||| || ||| |||||| ||||||||||||||| |||||||| ||||| |
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| T |
10581644 |
cttgctggaagcctgaaaactaa-ctgaatatgattcatgacacacatctggattatagagagttgatgtttatcaagggtagagaaaagttagttgaac |
10581742 |
T |
|
| Q |
857 |
aatcaggtgcaatgattggctcggctaagcaatctaaggaggtttcaaccttagcattagattcaacattgaaa |
930 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10581743 |
aatcaggtgcaatgattggctcggctaagcaatctaaggaggtttcaaccttagcattagattcaacattgaaa |
10581816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 354484 - 354768
Alignment:
| Q |
1 |
tttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgtttatcagggaagaaccctctacagttttggtggatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
354484 |
tttgtgatgctgttacttacactgagcatgcaaggaggaagactctgactgctatggatgttgtttatcagggaagaaccctctacagttttggtggatg |
354583 |
T |
|
| Q |
101 |
aagaagatgaagatttgttatgttgtttctttgtatttgtagcatgtgagtgttccgtacaattgttatcattgtaatctaatgaaatgatctttcatgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
354584 |
aagaagatgaagatttgttatgttgtttctttgtatttgtagcatgtgagtgttccatacaattgttatcattgtaatctaatgaaatgatctttcatgg |
354683 |
T |
|
| Q |
201 |
tgaactctgattctaacttatgttaatcccttgactnnnnnnnttagacaaatacacagtttaatttggtttcgatgaagtacag |
285 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
354684 |
tgaactctgattctaacttatgttaatcccttgactaaaaaaattagacaaatacacagtttaatttggtttcgatgaagtacag |
354768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 5 - 236
Target Start/End: Original strand, 10580870 - 10581116
Alignment:
| Q |
5 |
tgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgtttatcagggaagaaccctctacagttttggtggatgaaga |
104 |
Q |
| |
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||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
10580870 |
tgatgctgttacttacactgagcatg-----aggaagactctgactgctatggatgttgtttatcagggaagaaccctctatggttttggtggatgaaga |
10580964 |
T |
|
| Q |
105 |
agatgaagatttgttatgttgtttctttgtatttgtagcatgtgagtgttccgtacaattgttatc--------------------attgtaatctaatg |
184 |
Q |
| |
|
|||||||||||||||| | ||||||| |||||||| | ||||||||||||||||| |||||||||| |||||||| ||||| |
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|
| T |
10580965 |
agatgaagatttgttaagctgtttctgtgtatttgaaacatgtgagtgttccgtataattgttatcgttttgtaagttttatcaagattgtaatataatg |
10581064 |
T |
|
| Q |
185 |
aaatgatctttcatggtgaactctgattctaacttatgttaatcccttgact |
236 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10581065 |
aaatgatctttcatggtgaattctgattctaacttatgttaatcccttgact |
10581116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 10575471 - 10575532
Alignment:
| Q |
6 |
gatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgttta |
67 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||| ||| |||||||||||||||||||||| |
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|
| T |
10575471 |
gatgctgttacttacactgagcatgcgaggaggaaaactgtgactgctatggatgttgttta |
10575532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 953 - 993
Target Start/End: Original strand, 10581820 - 10581860
Alignment:
| Q |
953 |
ggtaaatgctctgttgattttggtgttaatatgcatcattt |
993 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10581820 |
ggtaaatgctctgttgattttggtgttaatatgcatcattt |
10581860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 39954945 - 39954885
Alignment:
| Q |
4 |
gtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgt |
64 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||| ||| | || || ||||||||||| |
|
|
| T |
39954945 |
gtgatgctgttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgt |
39954885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 2e-18; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 21584697 - 21584633
Alignment:
| Q |
4 |
gtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgtttat |
68 |
Q |
| |
|
||||||| ||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
21584697 |
gtgatgcggttacgtacactgagcatgcaaggaggaagactgtgactgctatggatgttgtttat |
21584633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 24497359 - 24497299
Alignment:
| Q |
4 |
gtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgt |
64 |
Q |
| |
|
||||||| ||||| |||||||||| ||||||||||||||| |||| || ||||||||||| |
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|
| T |
24497359 |
gtgatgcagttacatacactgagcacgcaaggaggaagactgtgacagccatggatgttgt |
24497299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 25085120 - 25085180
Alignment:
| Q |
4 |
gtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgt |
64 |
Q |
| |
|
||||||| ||||| |||||||||| ||||||||||||||| |||| || ||||||||||| |
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|
| T |
25085120 |
gtgatgcagttacatacactgagcacgcaaggaggaagactgtgacagccatggatgttgt |
25085180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 41027654 - 41027718
Alignment:
| Q |
4 |
gtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgtttat |
68 |
Q |
| |
|
||||||||||||||||||| |||| || ||||| |||||| | ||||||||||||||||||||| |
|
|
| T |
41027654 |
gtgatgctgttacttacacagagcacgctaggagaaagactgttactgctatggatgttgtttat |
41027718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 14261130 - 14261068
Alignment:
| Q |
6 |
gatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgtttat |
68 |
Q |
| |
|
||||||||||| || ||||| | ||| ||||||||||| | ||||||||||||||||||||| |
|
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| T |
14261130 |
gatgctgttacgtatactgaacatgcgaggaggaagacggttactgctatggatgttgtttat |
14261068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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