View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8419_low_2 (Length: 970)
Name: NF8419_low_2
Description: NF8419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8419_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 927; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 927; E-Value: 0
Query Start/End: Original strand, 18 - 956
Target Start/End: Complemental strand, 17109376 - 17108438
Alignment:
| Q |
18 |
caattttacaaggaaattgtagtgaccagctagtggaatttgcacagttggacagtcttcaattttcaacactttaatgttggtaccacattcagataag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17109376 |
caattttacaaggaaattgtagtgaccagctagtggaatttgcacagttggacagtcttcaattttcaacactttaatgttggtaccacattcagataag |
17109277 |
T |
|
| Q |
118 |
gcactcccgatcaaatgcacggaggatcctcccacgcaacatccacggatctcaagaaacttcagagagggtgaacaataattaaattccaattctccgc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17109276 |
gcactcccgatcaaatgcacggaggatcctcccaagcaacatccacggatctcaagaaacttcagagagggtgaacaataattaaattccaattctccgc |
17109177 |
T |
|
| Q |
218 |
aattgattagacgtaattcactgattttcggagaagatggaacagaatcaacaagttgtttacagtcacagattttcaaattcactaaacattcaagtga |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17109176 |
aattgattagacgtaattcactgattttcggagaagatggaacagaatcaacaagttgtttacagtcacagattttcaaattcactaaacattcaagtga |
17109077 |
T |
|
| Q |
318 |
ctttggcattttgcctttcagacttggacatcgcactatataaagctttcgtaggcgtggaaatacaccctcaacctcaacagcttcagattcccaatct |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17109076 |
ctttggcattttgcctttcagacttggacatcgcactatataaagctttcgtaggcgtggaaatacaccctcaacctcaacagcttcagattcccaatct |
17108977 |
T |
|
| Q |
418 |
ttccatccatccatatccttaaaaattaaagtttccaaggatggaaatggaacagatggagaagagcagctcacatccctataaaactccgtcctaatct |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17108976 |
ttccatccatccatatccttaaaaattaaagtttccaaggatggaaatggaacagatggagaagagcagctcacatccctataaaactccgtcctaatct |
17108877 |
T |
|
| Q |
518 |
ccactatcccagagagcccagtgatccgaaggtgcttaagtgatgacatagttccaagcgaaggaagcatcatacaatgtttacaattgctcaactctag |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17108876 |
ccactatcccagagagcccagtgatccgaaggtgcttaagtgatgacatagttccaagcgaaggaagcatcatacaatgtttacaattgctcaactctag |
17108777 |
T |
|
| Q |
618 |
cgataccagacttatcaatgagttgtctccaaaccaacttggaaaaaatgttccaccgtacttttcaattgagagcgttgtcaaatgtatggaaggttta |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17108776 |
cgataccagacttatcaatgagttgtctccaaaccaacttggaaaaaatgttccaccgtacttttcaattgagagcgttgtcaaatgtatggaaggttta |
17108677 |
T |
|
| Q |
718 |
agtttctcgagcacctccctttcattttttgaactggtactagtagcgttccaccttaaatttagtttcaaaagatgagatttacttttcatatctgcca |
817 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17108676 |
aggttctcgagcacctccctttcattttttgaactggtactagtagcgttccaccttaaatttagtttcaaaagatgagatttacttttcatatctgcca |
17108577 |
T |
|
| Q |
818 |
gagctgcatctgatggattagtaatattctgtagctcgaaaatggacagatctccatgtagattgagatctcctaactgtttcacattggactcactgcc |
917 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17108576 |
gagctgcatctgatggattagtaatattctgtagctcgaaaatggacagatctccatgtagagtgagatctcctaactgtttcacattggactcactgcc |
17108477 |
T |
|
| Q |
918 |
cttgtccacataaaaggaactaagaacttgaagattttg |
956 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17108476 |
cttgtccacataaaaggaactaagaacttgaagattttg |
17108438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 787
Target Start/End: Complemental strand, 16978044 - 16977278
Alignment:
| Q |
18 |
caattttacaaggaaattgtagtgaccagctagtggaatttgcacagttggacagtcttcaattttcaacactttaatgttggtaccacattcagataag |
117 |
Q |
| |
|
|||||||||||||||| ||||| || ||| ||||| |||| |||||| || ||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
16978044 |
caattttacaaggaaactgtagcatccgcataggggaatatgcatagttgggcaatcttcaattttcaacgatttaatgttggtaccacattcagataat |
16977945 |
T |
|
| Q |
118 |
gcactcccgatcaaatgcacggaggatcctcccacgcaacatccacggatctcaagaaacttcagagagggtgaacaataattaaattccaattctccgc |
217 |
Q |
| |
|
| | |||| || ||| ||||||||||||| | | | ||||| ||| || | |||||| ||||||| || | || ||||||||||| ||||| ||| | |
|
|
| T |
16977944 |
gtatgcccggtccaatccacggaggatccttcgatgtaacattgacgaatgtaaagaaatttcagagtggataaatgataattaaatttcaattttccac |
16977845 |
T |
|
| Q |
218 |
aattgattagacgtaattcactgattttcggagaagatggaacagaatcaacaagttgtttacagtcacagattttcaaattcactaaacattcaagtga |
317 |
Q |
| |
|
||||| | ||||||| |||||||||| ||||| ||||||||||| || || ||||| || ||||| ||||||| | |||||||||||||||||| |
|
|
| T |
16977844 |
aattggtgagacgtagttcactgattgatggagagaatggaacagaagtcacgagctgtttgcaatcacaaattttcagactcactaaacattcaagtgt |
16977745 |
T |
|
| Q |
318 |
ctttggcattttgcctttcagacttggacatcgcactatataaagctttcgtaggcgtggaaatacaccctcaacctcaacagcttcagattcccaatct |
417 |
Q |
| |
|
|| ||| | |||| |||||||| |||||||||||| |||| |||||||| ||| |||||||| ||| || | | ||||| ||||| ||||||| | | |
|
|
| T |
16977744 |
ctctggtaatttgtctttcagatttggacatcgcattatagaaagcttttttagacgtggaaaaacaacccc---cccaacaacttcaaattcccatttt |
16977648 |
T |
|
| Q |
418 |
ttccatccatccatatccttaaaaattaaagtttccaaggatggaaatggaacagatggagaagagcagctcacatccctataaaactccgtcctaatct |
517 |
Q |
| |
|
| |||||||| ||||||||||||| |||| |||||||||||||||||||||| |||| || ||||| ||| ||||||||||||||||| | | |||| |
|
|
| T |
16977647 |
tcccatccattcatatccttaaaagttaaggtttccaaggatggaaatggaatagatacagtagagcttctcccatccctataaaactccataccaatca |
16977548 |
T |
|
| Q |
518 |
ccactatcccagagagcccagtgatccgaaggtgcttaagtgatgacatagttccaagcgaaggaagcatcatacaatgtttacaattgctcaactctag |
617 |
Q |
| |
|
||||||| |||||||| || || |||||||||||||| |||||||||||| |||||| |||||||||| ||||| | || ||||||||| |||| | |
|
|
| T |
16977547 |
ccactattccagagagtccggtaatccgaaggtgcttgagtgatgacataactccaagtgaaggaagcaaaatacagttttcacaattgcttaacttcaa |
16977448 |
T |
|
| Q |
618 |
cgataccagacttatcaatgagttgtctccaaaccaacttggaaaaaatgttccaccgtacttttcaattgagagcgttgtcaaatgtatggaaggttta |
717 |
Q |
| |
|
|||||||||| | || ||| ||||||||||||||| ||| || || || |||| ||||| |||||||||||| |||||||||| |||||||| |
|
|
| T |
16977447 |
ggataccagacatgacagtgaattgtctccaaaccaatgtgggaataacgtaccacaatacttctcaattgagagctcattcaaatgtatagaaggtttt |
16977348 |
T |
|
| Q |
718 |
agtttctcgagcacctccctttcattttttgaactggtactagtagcgttccaccttaaatttagtttca |
787 |
Q |
| |
|
|| |||| ||||||||||||||| |||| ||||||| | | ||| || ||||| ||||| | |||||||| |
|
|
| T |
16977347 |
aggttctggagcacctccctttctttttgtgaactgttgcgagttgcattccatcttaattctagtttca |
16977278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 18 - 787
Target Start/End: Complemental strand, 17048254 - 17047488
Alignment:
| Q |
18 |
caattttacaaggaaattgtagtgaccagctagtggaatttgcacagttggacagtcttcaattttcaacactttaatgttggtaccacattcagataag |
117 |
Q |
| |
|
|||||||||||||||||||||| || ||| ||||| |||| ||||| || ||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
17048254 |
caattttacaaggaaattgtagcatccgcataggggaatatgcatagttgcgcaatcttcaattttcaacgatttaatgttggtaccacattcagataat |
17048155 |
T |
|
| Q |
118 |
gcactcccgatcaaatgcacggaggatcctcccacgcaacatccacggatctcaagaaacttcagagagggtgaacaataattaaattccaattctccgc |
217 |
Q |
| |
|
| | || |||| ||| ||||||||||||| | | | | ||| ||| || | |||||| ||||||| || | || ||||||||||| ||||| ||| | |
|
|
| T |
17048154 |
gtatgcctgatccaatccacggaggatccttcgatgtagcattgacgaatgtaaagaaatttcagagtggataaatgataattaaatttcaattttccac |
17048055 |
T |
|
| Q |
218 |
aattgattagacgtaattcactgattttcggagaagatggaacagaatcaacaagttgtttacagtcacagattttcaaattcactaaacattcaagtga |
317 |
Q |
| |
|
||||| | ||||||| |||||||||| ||||| ||||||||||| || || ||||| || ||||| ||||||| | |||||||||||||||||| |
|
|
| T |
17048054 |
aattggtgagacgtagttcactgattgatggagagaatggaacagaagtcacgagctgtttgcaatcacaaattttcagactcactaaacattcaagtgt |
17047955 |
T |
|
| Q |
318 |
ctttggcattttgcctttcagacttggacatcgcactatataaagctttcgtaggcgtggaaatacaccctcaacctcaacagcttcagattcccaatct |
417 |
Q |
| |
|
|| ||| | |||| |||||||| |||||||||||| |||| |||||||| ||| |||||||| ||| || | || |||| ||||| ||||||| | | |
|
|
| T |
17047954 |
ctctggtaatttgtctttcagatttggacatcgcattatagaaagcttttttagacgtggaaaaacaacccc---cttaacaacttcaaattcccatttt |
17047858 |
T |
|
| Q |
418 |
ttccatccatccatatccttaaaaattaaagtttccaaggatggaaatggaacagatggagaagagcagctcacatccctataaaactccgtcctaatct |
517 |
Q |
| |
|
| |||||||| ||||||||||||| |||| |||||||||||||||||||||| |||| || ||||| ||| ||||||| ||||||||| | | |||| |
|
|
| T |
17047857 |
tcccatccattcatatccttaaaagttaaggtttccaaggatggaaatggaatagatacagtagagcttctcccatccctgtaaaactccataccaatca |
17047758 |
T |
|
| Q |
518 |
ccactatcccagagagcccagtgatccgaaggtgcttaagtgatgacatagttccaagcgaaggaagcatcatacaatgtttacaattgctcaactctag |
617 |
Q |
| |
|
||||||| |||||||| || || |||||||||||||| |||||||||||| |||||| |||||||||| ||||| | || ||||||||| |||| | |
|
|
| T |
17047757 |
ccactattccagagagtccggtaatccgaaggtgcttgagtgatgacataactccaagtgaaggaagcaaaatacagttttcacaattgcttaacttcaa |
17047658 |
T |
|
| Q |
618 |
cgataccagacttatcaatgagttgtctccaaaccaacttggaaaaaatgttccaccgtacttttcaattgagagcgttgtcaaatgtatggaaggttta |
717 |
Q |
| |
|
|||||||||| | || ||| ||||||||||||||| ||| || || || |||| ||||| |||||||||||| |||||||||| |||||||| |
|
|
| T |
17047657 |
ggataccagacgtgacagtgaattgtctccaaaccaatgtgggaataacgtaccacaatacttctcaattgagagctcattcaaatgtatagaaggtttt |
17047558 |
T |
|
| Q |
718 |
agtttctcgagcacctccctttcattttttgaactggtactagtagcgttccaccttaaatttagtttca |
787 |
Q |
| |
|
|| |||| ||||||||||||||| |||| ||||||| | | ||| || ||||| ||||| | |||||||| |
|
|
| T |
17047557 |
aggttctggagcacctccctttctttttgtgaactgttgcgagttgcattccatcttaattctagtttca |
17047488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 182; E-Value: 7e-98
Query Start/End: Original strand, 18 - 787
Target Start/End: Complemental strand, 17029916 - 17029150
Alignment:
| Q |
18 |
caattttacaaggaaattgtagtgaccagctagtggaatttgcacagttggacagtcttcaattttcaacactttaatgttggtaccacattcagataag |
117 |
Q |
| |
|
|||||||||||||||||||||| || ||| ||||| |||| ||||| || ||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
17029916 |
caattttacaaggaaattgtagcatccgcataggggaatatgcatagttgcgcaatcttcaattttcaacgatttaatgttggtaccacattcagataat |
17029817 |
T |
|
| Q |
118 |
gcactcccgatcaaatgcacggaggatcctcccacgcaacatccacggatctcaagaaacttcagagagggtgaacaataattaaattccaattctccgc |
217 |
Q |
| |
|
| | || |||| ||| ||||||||||||| | | | | ||| ||| || | |||||| ||||||| || | || ||||||||||| ||||| ||| | |
|
|
| T |
17029816 |
gtatgcctgatccaatccacggaggatccttcgatgtagcattgacgaatgtaaagaaatttcagagtggataaatgataattaaatttcaattttccac |
17029717 |
T |
|
| Q |
218 |
aattgattagacgtaattcactgattttcggagaagatggaacagaatcaacaagttgtttacagtcacagattttcaaattcactaaacattcaagtga |
317 |
Q |
| |
|
||||| | ||||||| |||||||||| ||||| ||||||||||| || || ||||| || ||||| ||||||| | |||||||||||||||||| |
|
|
| T |
17029716 |
aattggtgagacgtagttcactgattgatggagagaatggaacagaagtcacgagctgtttgcaatcacaaattttcagactcactaaacattcaagtgt |
17029617 |
T |
|
| Q |
318 |
ctttggcattttgcctttcagacttggacatcgcactatataaagctttcgtaggcgtggaaatacaccctcaacctcaacagcttcagattcccaatct |
417 |
Q |
| |
|
|| ||| | |||| |||||||| |||||||||||| |||| |||||||| ||| |||||||| ||| || | | |||| ||||| ||||||| | | |
|
|
| T |
17029616 |
ctctggtaatttgtctttcagatttggacatcgcattatagaaagcttttttagacgtggaaaaacaacccc---ccnaacaacttcaaattcccatttt |
17029520 |
T |
|
| Q |
418 |
ttccatccatccatatccttaaaaattaaagtttccaaggatggaaatggaacagatggagaagagcagctcacatccctataaaactccgtcctaatct |
517 |
Q |
| |
|
| |||||||| ||||||||||||| |||| |||||||||||||||||||||| |||| || ||||| ||| ||||||||||||||||| | | |||| |
|
|
| T |
17029519 |
tcccatccattcatatccttaaaagttaaggtttccaaggatggaaatggaatagatacagtagagcttctcccatccctataaaactccataccaatca |
17029420 |
T |
|
| Q |
518 |
ccactatcccagagagcccagtgatccgaaggtgcttaagtgatgacatagttccaagcgaaggaagcatcatacaatgtttacaattgctcaactctag |
617 |
Q |
| |
|
||||||| |||||||| | || |||||||||||||| |||||||||||| |||||| |||||||||| ||||| | || ||||||||| |||| | |
|
|
| T |
17029419 |
ccactattccagagagtcnggtaatccgaaggtgcttgagtgatgacataactccaagtgaaggaagcaaaatacagttttcacaattgcttaacttcaa |
17029320 |
T |
|
| Q |
618 |
cgataccagacttatcaatgagttgtctccaaaccaacttggaaaaaatgttccaccgtacttttcaattgagagcgttgtcaaatgtatggaaggttta |
717 |
Q |
| |
|
|||||||||| | || ||| ||||||||||||||| ||| || || || |||| ||||| |||||||||||| |||||||||| |||||||| |
|
|
| T |
17029319 |
ggataccagacatgacagtgaattgtctccaaaccaatgtgggaataacgtaccacaatacttctcaattgagagctcattcaaatgtatagaaggtttt |
17029220 |
T |
|
| Q |
718 |
agtttctcgagcacctccctttcattttttgaactggtactagtagcgttccaccttaaatttagtttca |
787 |
Q |
| |
|
|| |||| ||||||||||||||| |||| ||||||| | | ||| || ||||| ||||| | |||||||| |
|
|
| T |
17029219 |
aggttctggagcacctccctttctttttgtgaactgttgcgagttgcattccatcttaattctagtttca |
17029150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 407 - 472
Target Start/End: Complemental strand, 14298044 - 14297979
Alignment:
| Q |
407 |
attcccaatctttccatccatccatatccttaaaaattaaagtttccaaggatggaaatggaacag |
472 |
Q |
| |
|
||||||| |||| |||| ||| |||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
14298044 |
attcccattcttcccattcatacatatcctcaaattgtaaagtttccaaggatggaaatggaacag |
14297979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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