View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8419_low_3 (Length: 570)

Name: NF8419_low_3
Description: NF8419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8419_low_3
NF8419_low_3
[»] chr8 (2 HSPs)
chr8 (1-570)||(6503403-6503972)
chr8 (441-570)||(6504098-6504227)


Alignment Details
Target: chr8 (Bit Score: 530; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 1 - 570
Target Start/End: Original strand, 6503403 - 6503972
Alignment:
Q  1 aaaaatcattatcttccaatttctcgatcgctttcggttgatttgttcgcttgaaatttcctcgaacacctttagtcctcatcaccggcagttgtggatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6503403 aaaaatcattatcttccaatttctcgatcgctttcggttgatttgttcgcttgaaatttcctcgaacacctttagtcctcatcaccggcagttgtggatt 6503502  T
Q  101 tagctcctgttccggcactggcgaagaaaattctgcagaagtaaccgctgccgtgtttacttcagattcactcctaattttcttcttcctcacagccggt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  6503503 tagctcctgttccggcactggcgaagaaaattctgcagaagtaactgctgccgtgtttacttcagattcactcctaattttcttcttcctcgcagccggt 6503602  T
Q  201 tgccgatgcggatttagctccggttccggcaccagagaggaaaattccgcagaagtcaccgctgccacgttttccatagatgcactcctgattttctttt 300  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||| |    
T  6503603 tgccgatgcggattaagctccggttccggcaccagagaggaaaattccgcagaagtcactactgccacgttttccatagatgcactcctggttttcttct 6503702  T
Q  301 tcctcaacgcaggtatcggttgcagaggcggcggttgtgaattctccacaacagaatcattgattaccgatttctcaaccgtttccacttcatatatccg 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  6503703 tcctcaacgcaggtatcggttgcagaggcggcggttgtgaattctccacaacagaatcattgattaccgatttctcaaccgtttccacttcatacatcgg 6503802  T
Q  401 atcaacatttcttccaacatcttcagtttgagaatctggcactggtttcacctccggtcgccgggaaacttcaccggaagtaaccttttcccggtgaaat 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6503803 atcaacatttcttccaacatcttcagtttgagaatctggcactggtttcacctccggtcgccgggaaacttcaccggaagtaaccttttcccggtgaaat 6503902  T
Q  501 tcatcttcactttccaatctggagttccgataagggaagtgaatatgagtatcatcataaaaccggtacc 570  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6503903 tcatcttcactttccaatctagagttccgataagggaagtgaatatgagtatcatcataaaaccggtacc 6503972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 441 - 570
Target Start/End: Original strand, 6504098 - 6504227
Alignment:
Q  441 actggtttcacctccggtcgccgggaaacttcaccggaagtaaccttttcccggtgaaattcatcttcactttccaatctggagttccgataagggaagt 540  Q
    |||||||||||||||||| ||||| ||  |||||||||||||||| | |||||||||||||||||||||  ||  ||||| |  | ||||||| | || |    
T  6504098 actggtttcacctccggttgccggaaagtttcaccggaagtaaccgtctcccggtgaaattcatcttcatcttgaaatctcggataccgataacgaaaat 6504197  T
Q  541 gaatatgagtatcatcataaaaccggtacc 570  Q
      | | ||||||||||||||||||||||||    
T  6504198 ttacacgagtatcatcataaaaccggtacc 6504227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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