View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8419_low_4 (Length: 506)
Name: NF8419_low_4
Description: NF8419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8419_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 198 - 486
Target Start/End: Complemental strand, 49257707 - 49257419
Alignment:
| Q |
198 |
taacatcaattttataactcttttctgtgtgaaagctttttcctccttggaccatacagtatatgagatatgatctttttaattaatcaagttggcaact |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49257707 |
taacatcaattttataactcttttctgtgtgaatgctttttcctccttggaccatacagtatatgagatatgatctttttaattaatcaagttggcaact |
49257608 |
T |
|
| Q |
298 |
ctgaggaatcttctttatttgctcaaactaatctatcctttctactgcaaaaccttcttgaaatatcctttcccgtgccttaattgcctgcaatcataga |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49257607 |
ctgaggaatcttctttatttgctcaaactaatctatcctttgtactgcaaaactttcttgaaatatcctttcccgtgccttaattgcctgcaatcataga |
49257508 |
T |
|
| Q |
398 |
cactcaagaaatgagtatattttaatgaatggtatatgttcaaaactcttgcagaatcttaataagatagcatggcctaagatgctagt |
486 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49257507 |
cactcaagaaatgagtatattttaatgaatggtatatgttcaaaactcttgcagaatcttaataagatagcatggcctaagatgctagt |
49257419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 73 - 188
Target Start/End: Complemental strand, 49257912 - 49257797
Alignment:
| Q |
73 |
tcaagggaaggaggccctgataacccagagttcgatcgagaggtaaataaagtttgcacaagaattattccatccaaaaattgctttgaatagttttact |
172 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49257912 |
tcaagggaaggaggccctgataacccagagttcgatcgagaggtaaataaagtctgcacaagaattattccatccaaaaattgctttgaatagttttact |
49257813 |
T |
|
| Q |
173 |
atggactttttcacca |
188 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
49257812 |
atggactttttcacca |
49257797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 354 - 486
Target Start/End: Complemental strand, 49270532 - 49270402
Alignment:
| Q |
354 |
cttgaaatatcctttcccgtgccttaattgcctgcaatcatagacactcaagaaatgagtatattttaatgaatggtatatgttcaaaactcttgcagaa |
453 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |||| || |||||| | ||||||| ||| || ||| |||||||||||| || ||||| |
|
|
| T |
49270532 |
cttgaaatatcctttcccgtgccttgattgcctgcaatca--gacattccagaaattattatatttcaataaacagtacatgttcaaaactgttacagaa |
49270435 |
T |
|
| Q |
454 |
tcttaataagatagcatggcctaagatgctagt |
486 |
Q |
| |
|
|| ||||||||||||| ||||||||||| |||| |
|
|
| T |
49270434 |
tcataataagatagcaaggcctaagatgttagt |
49270402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 49257998 - 49257940
Alignment:
| Q |
1 |
ggtggtctgttttcatatttgcatcgttgcggttaatcttgtactttcctattcttgac |
59 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49257998 |
ggtggtctgttttcatatttgcatcgttgcggttaatcttgtactttcctattcttgac |
49257940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 6114455 - 6114403
Alignment:
| Q |
101 |
agttcgatcgagaggtaaataaagtttgcacaagaattattccatccaaaaat |
153 |
Q |
| |
|
||||| || ||||||||||||||||||| ||||||||||| ||| ||||||| |
|
|
| T |
6114455 |
agttcaattgagaggtaaataaagtttggtcaagaattattacattcaaaaat |
6114403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University