View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8419_low_5 (Length: 372)
Name: NF8419_low_5
Description: NF8419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8419_low_5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 301
Target Start/End: Complemental strand, 20270447 - 20270164
Alignment:
| Q |
18 |
ataatttataagcacaacatagttttcaacagcaacattatccaaaactgactaaccatatgtttgaattcacattcgagtcttcaatctcgcgtcctag |
117 |
Q |
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| T |
20270447 |
ataatttacaagaataacatagttttcaacataaactttttccaaaactgactaaccatgtgtttggattcacgctcgagtcttcaatctcgcgtcctag |
20270348 |
T |
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| Q |
118 |
accgcttctaacgcgattttactgaagctctataactaagcttccacattagtttgtttttcaccgtgattttggtgtacgcgctgcagaactgaacata |
217 |
Q |
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| T |
20270347 |
accgcttctaacgcgattttactgaagctctataactaagcttccacattagtttgtgtttcaccgtgattttggtgtacgcgctgcagaactgaacata |
20270248 |
T |
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| Q |
218 |
tgataaacgagatatcaacaatgagatttgagtgaatgactctcgcatgtgttatactgaaacaat-acactgatattaagaatt |
301 |
Q |
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| T |
20270247 |
tgataaacgagatatcaacaatgagatttgagtgaatgattctcacatgtgttatattgaaccaatgacact-atattaagaatt |
20270164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 20239286 - 20239127
Alignment:
| Q |
18 |
ataatttataagcacaacatagttttcaacagcaacattatccaaaactgactaaccatatgtttgaattcacattcgagtcttcaatctcgcgtcctag |
117 |
Q |
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| T |
20239286 |
ataatttacaagaataacatagttttcaacataaactttttccaaaactgactaaccatgtgtttggattcacgctcgagtcttcaatctcgcgtcctag |
20239187 |
T |
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| Q |
118 |
accgcttctaacgcgattttactgaagctctataactaagcttccacattagtttgtttt |
177 |
Q |
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| T |
20239186 |
accgcttctaacgcgattttactgaagctctataactaagcttccacattagtttgtttt |
20239127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 176 - 301
Target Start/End: Complemental strand, 20235226 - 20235101
Alignment:
| Q |
176 |
tttcaccgtgattttggtgtacgcgctgcagaactgaacatatgataaacgagatatcaacaatgagatttgagtgaatgactctcgcatgtgttatact |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| | |
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| T |
20235226 |
tttcaccgtgattttggtgtacgcgctgcagaactgaacatatgataaacgagatatcaacaatgagatttgagtgaatgattctcacatgtgttatatt |
20235127 |
T |
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| Q |
276 |
gaaacaat-acactgatattaagaatt |
301 |
Q |
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| T |
20235126 |
gaaccaatgacact-atattaagaatt |
20235101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 327 - 372
Target Start/End: Original strand, 32069243 - 32069288
Alignment:
| Q |
327 |
aaaatattatgatacttcgttttgttaaaactagttaacaaatagt |
372 |
Q |
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| T |
32069243 |
aaaatattatgttacttcgtttagttaaaactagttaacaaatagt |
32069288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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