View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8419_low_6 (Length: 248)
Name: NF8419_low_6
Description: NF8419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8419_low_6 |
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| [»] scaffold0046 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 18 - 233
Target Start/End: Complemental strand, 29319368 - 29319153
Alignment:
| Q |
18 |
agtctccctcatcagatgagcttacaaattcttatgcagcttattttgtaataaaggaatgcatctttttctatgtaagtgctttctccacttgctattc |
117 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29319368 |
agtctccctcatcagatgagcttacaaattctcatgcagcttattttgtaataaaggaatgcatctttttctatgtaagtgctttctccacttgctattc |
29319269 |
T |
|
| Q |
118 |
aataatgatatataatctggtttttaattatggagtccatgcaacaaaatttcgtcttgtcagaataactcatatatannnnnnnacttgcatgtaattg |
217 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| || |||||||||||| ||||| |||||||||||| |||||||||||||| |
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| T |
29319268 |
aataatgatatataatctggattttaattatggagtccatgcagcagaatttcgtcttggcagaagaactcatatatattttttttcttgcatgtaattg |
29319169 |
T |
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| Q |
218 |
ggccattcctttaatt |
233 |
Q |
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||||||||||||||| |
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| T |
29319168 |
tgccattcctttaatt |
29319153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0046 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: scaffold0046
Description:
Target: scaffold0046; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 76784 - 76565
Alignment:
| Q |
18 |
agtctccctcatcagatgagcttacaaattcttatgcagcttattttgtaataaaggaatgcatctttttctatgtaagtgctttctccacttgctattc |
117 |
Q |
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|||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||| || |||||||||||||||||| ||||||| |||||||||| |
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| T |
76784 |
agtctccctcttcagatgagcttacaaattctcatgcagcttatttcgtaataaaggaacgcttctttttctatgtaagtgttttctccgcttgctattc |
76685 |
T |
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| Q |
118 |
aataatgatatataatctggtttttaattatggagtccatgcaacaaaatttcgtcttgtcagaataactcatatatannnnnnnacttgcatgtaattg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || ||||||||| || ||||| |||||||||||| |||||||||||||| |
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| T |
76684 |
aataatgatatataatctggtttttaattatggagtccatgcagcagaatttcgtcatggcagaagaactcatatatattttttt-cttgcatgtaattg |
76586 |
T |
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| Q |
218 |
ggccattcctttaattctctg |
238 |
Q |
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||||||||||||||| |||| |
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| T |
76585 |
tgccattcctttaattgtctg |
76565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 24967463 - 24967244
Alignment:
| Q |
18 |
agtctccctcatcagatgagcttacaaattcttatgcagcttattttgtaataaaggaatgcatctttttctatgtaagtgctttctccacttgctattc |
117 |
Q |
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|||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||| || |||||||||||||||||| ||||||| |||||||||| |
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| T |
24967463 |
agtctccctcttcagatgagcttacaaattctcatgcagcttatttcgtaataaaggaacgcttctttttctatgtaagtgttttctccgcttgctattc |
24967364 |
T |
|
| Q |
118 |
aataatgatatataatctggtttttaattatggagtccatgcaacaaaatttcgtcttgtcagaataactcatatatannnnnnnacttgcatgtaattg |
217 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||| || ||||||||| || ||||| |||||||||||| |||||||||||||| |
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| T |
24967363 |
aataatgatatataatctggtttttaattatggagtccatgcagcagaatttcgtcatggcagaagaactcatatatattttttt-cttgcatgtaattg |
24967265 |
T |
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| Q |
218 |
ggccattcctttaattctctg |
238 |
Q |
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||||||||||||||| |||| |
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| T |
24967264 |
tgccattcctttaattgtctg |
24967244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 34735478 - 34735259
Alignment:
| Q |
18 |
agtctccctcatcagatgagcttacaaattcttatgcagcttattttgtaataaaggaatgcatctttttctatgtaagtgctttctccacttgctattc |
117 |
Q |
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|
|||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
34735478 |
agtctccctcttcagatgagcttacaaattctcatgcagcttatttcataataaaggaacgcatctttttctatgtaagtgctttctccgcttgctattc |
34735379 |
T |
|
| Q |
118 |
aataatgatatataatctggtttttaattatggagtccatgcaacaaaatttcgtcttgtcagaataactcatatatannnnnnnacttgcatgtaattg |
217 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||| || ||||||||| || ||||| ||||| ||||| |||||||||||||| |
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| T |
34735378 |
aataatgatatataatctggtttttaattatggagtccatgcagcagaatttcgtcatggcagaagaactcgtatat-ttttttttcttgcatgtaattg |
34735280 |
T |
|
| Q |
218 |
ggccattcctttaattctctg |
238 |
Q |
| |
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||||||||||||||| |||| |
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| T |
34735279 |
tgccattcctttaattgtctg |
34735259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 28468255 - 28468475
Alignment:
| Q |
18 |
agtctccctcatcagatgagcttacaaattcttatgcagcttattttgtaataaaggaatgcatctttttctatgtaagtgctttctccacttgctattc |
117 |
Q |
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|
|||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
28468255 |
agtctccctcttcagatgagcttacaaattctcatgcagcttatttcataataaaggaacgcatctttttctatgtaagtgctttctccgcttgctattc |
28468354 |
T |
|
| Q |
118 |
aataatgatatataatctggtttttaattatggagtccatgcaacaaaatttcgtcttgtcagaataactcatatatannnnnnnacttgcatgtaattg |
217 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||| || ||||||||| || ||||| ||||| ||| |||||||||||||| |
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| T |
28468355 |
aataatgatatataatctggtttttaattatggagtccatgcagcagaatttcgtcatggcagaagaactcgtattatttttttttcttgcatgtaattg |
28468454 |
T |
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| Q |
218 |
ggccattcctttaattctctg |
238 |
Q |
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||||||||||||||| |||| |
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| T |
28468455 |
tgccattcctttaattgtctg |
28468475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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