View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8420_low_2 (Length: 236)

Name: NF8420_low_2
Description: NF8420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8420_low_2
NF8420_low_2
[»] chr4 (21 HSPs)
chr4 (1-231)||(10978346-10978573)
chr4 (1-212)||(48208705-48208916)
chr4 (1-212)||(9579067-9579278)
chr4 (1-212)||(9584762-9584973)
chr4 (6-212)||(23510434-23510639)
chr4 (1-212)||(47128242-47128452)
chr4 (1-212)||(34769149-34769360)
chr4 (1-174)||(54779732-54779905)
chr4 (1-188)||(35780124-35780311)
chr4 (72-169)||(10431126-10431223)
chr4 (65-106)||(47128457-47128498)
chr4 (67-106)||(23510385-23510424)
chr4 (135-173)||(10978539-10978577)
chr4 (135-173)||(47128418-47128456)
chr4 (135-173)||(48208882-48208920)
chr4 (135-173)||(54779871-54779909)
chr4 (67-106)||(34769105-34769144)
chr4 (67-106)||(35780080-35780119)
chr4 (135-173)||(9579063-9579101)
chr4 (135-173)||(9584758-9584796)
chr4 (135-173)||(35780120-35780158)
[»] chr6 (2 HSPs)
chr6 (1-212)||(19740817-19741028)
chr6 (135-173)||(19740813-19740851)
[»] chr2 (11 HSPs)
chr2 (1-231)||(34715785-34716018)
chr2 (1-231)||(34693373-34693606)
chr2 (6-231)||(29940179-29940411)
chr2 (105-183)||(40445272-40445347)
chr2 (65-106)||(29940128-29940169)
chr2 (65-106)||(40445383-40445424)
chr2 (135-173)||(34693572-34693610)
chr2 (135-173)||(34715984-34716022)
chr2 (67-106)||(34693611-34693650)
chr2 (67-106)||(34716023-34716062)
chr2 (135-173)||(29940170-29940208)
[»] chr1 (13 HSPs)
chr1 (9-212)||(5316014-5316217)
chr1 (1-212)||(21741503-21741714)
chr1 (1-212)||(50880804-50881014)
chr1 (6-215)||(4977518-4977734)
chr1 (1-106)||(50881019-50881124)
chr1 (43-173)||(23182180-23182310)
chr1 (1-68)||(4977445-4977512)
chr1 (65-106)||(4977399-4977440)
chr1 (65-106)||(5316230-5316271)
chr1 (67-106)||(21741459-21741498)
chr1 (67-106)||(50881129-50881168)
chr1 (135-173)||(4977441-4977479)
chr1 (135-173)||(21741499-21741537)
[»] chr8 (4 HSPs)
chr8 (1-214)||(41878423-41878635)
chr8 (54-173)||(45472560-45472679)
chr8 (135-173)||(41878601-41878639)
chr8 (67-106)||(41878640-41878679)
[»] chr3 (7 HSPs)
chr3 (1-231)||(3954466-3954692)
chr3 (1-141)||(8073662-8073802)
chr3 (65-106)||(8073616-8073657)
chr3 (135-173)||(3954462-3954500)
chr3 (67-106)||(3954422-3954461)
chr3 (135-173)||(8073658-8073696)
chr3 (158-188)||(8073802-8073832)
[»] chr5 (11 HSPs)
chr5 (1-212)||(27078448-27078659)
chr5 (1-206)||(22987059-22987264)
chr5 (1-212)||(30853525-30853735)
chr5 (1-231)||(23285500-23285721)
chr5 (58-210)||(16592486-16592638)
chr5 (65-106)||(23285450-23285491)
chr5 (135-173)||(22987055-22987093)
chr5 (135-173)||(30853701-30853739)
chr5 (67-106)||(30853740-30853779)
chr5 (135-173)||(23285496-23285534)
chr5 (65-106)||(27078664-27078705)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 10978573 - 10978346
Alignment:
Q  1 cagtattgttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaac 100  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10978573 cagtgttgttttggaaaggggaaaaccgattgaaatttgaaacagtgttgttttcaacattcaaaaaatctctatcaatctctattttagcaatttcaac 10978474  T
Q  101 gttcaaattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactgattgaaactttgagagttgagaatcagtgatgat 200  Q
     |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  10978473 attcaaattaatgaaagagagtttatttacttaccaaacagtgttgctttggaaagggggaaactgattgaaaccttgagagttgagaatcagtgatgat 10978374  T
Q  201 ttggtgaagaagaaggaaagcctgatgatgt 231  Q
    ||||||||   ||||||||||||||||||||    
T  10978373 ttggtgaa---gaaggaaagcctgatgatgt 10978346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 48208916 - 48208705
Alignment:
Q  1 cagtattgttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaac 100  Q
    |||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48208916 cagtgttgttttggaaaggggaaaaccgattgaaatttgaaatagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaac 48208817  T
Q  101 gttcaaattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactgattgaaactttgagagttgagaatcagtgatgat 200  Q
     |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  48208816 attcaaattaatgaaagagagtttatttacttaccaaacagtgttgttttggaaaggggaaaactgattgaaaccttgagagttgagaatcagcgatgat 48208717  T
Q  201 ttggtgaagaag 212  Q
    ||||||||||||    
T  48208716 ttggtgaagaag 48208705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 9579067 - 9579278
Alignment:
Q  1 cagtattgttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaac 100  Q
    |||| |||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9579067 cagtgttgttttggaaatgggaaaaccgattgaaatttgaaatagtgttgttttcaacattcaacaaatctctatcaatctctattttagtaatttcaac 9579166  T
Q  101 gttcaaattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactgattgaaactttgagagttgagaatcagtgatgat 200  Q
     |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  9579167 attcaaattaatgaaagagagtttatttacttaccaaacagtgttgttttggaaaggggaaaactgattgaaaccttgagagttgagaatcagtgatgat 9579266  T
Q  201 ttggtgaagaag 212  Q
    ||||||||||||    
T  9579267 ttggtgaagaag 9579278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 9584762 - 9584973
Alignment:
Q  1 cagtattgttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaac 100  Q
    |||| |||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9584762 cagtgttgttttggaaatgggaaaaccgattgaaatttgaaatagtgttgttttcaacattcaacaaatctctatcaatctctattttagtaatttcaac 9584861  T
Q  101 gttcaaattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactgattgaaactttgagagttgagaatcagtgatgat 200  Q
     |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  9584862 attcaaattaatgaaagagagtttatttacttaccaaacagtgttgttttggaaaggggaaaactgattgaaaccttgagagttgagaatcagtgatgat 9584961  T
Q  201 ttggtgaagaag 212  Q
    ||||||||||||    
T  9584962 ttggtgaagaag 9584973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 6 - 212
Target Start/End: Original strand, 23510434 - 23510639
Alignment:
Q  6 ttgttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaacgttca 105  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  23510434 ttgttttggaaaggg-aaaaccgattgaaatttgaaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagaaatttcaacattca 23510532  T
Q  106 aattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactgattgaaactttgagagttgagaatcagtgatgatttggt 205  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23510533 aattaatgaaagagagtttatttactaaccaaacagtgttgttttggaaaggggaaaactgattgaaaccttgagagttgagaatcagtgatgatttggt 23510632  T
Q  206 gaagaag 212  Q
    |||||||    
T  23510633 gaagaag 23510639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 47128452 - 47128242
Alignment:
Q  1 cagtattgttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaac 100  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  47128452 cagtgttgttttggaaaggggaaaaccgattgaaatttgaaacagtgttgttttcaacattcaacaaatctctatcaatctctattttcacaatttcaac 47128353  T
Q  101 gttcaaattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactgattgaaactttgagagttgagaatcagtgatgat 200  Q
     |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  47128352 attcaaattaatgaaagagagtttatttacttaccaaacaatgttgttttggaaaggggaaaactgattgaaac-ttgagagttgagaatcactgatgat 47128254  T
Q  201 ttggtgaagaag 212  Q
    ||||||||||||    
T  47128253 ttggtgaagaag 47128242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 34769149 - 34769360
Alignment:
Q  1 cagtattgttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaac 100  Q
    |||| ||||||||||||  |||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  34769149 cagtgttgttttggaaattggaaaaccgattgaaatttgaaacagtgctgttttcaacattcaacaaatttctatcaatctctattttagcaatttcaac 34769248  T
Q  101 gttcaaattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactgattgaaactttgagagttgagaatcagtgatgat 200  Q
     |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |    
T  34769249 attcaaattaatgaaagagagtttatttacttaccaaacagtgttgttttggaaaggggtaaactgattgaaaccttgagagttgagaatcagtgatgtt 34769348  T
Q  201 ttggtgaagaag 212  Q
    ||||||||||||    
T  34769349 ttggtgaagaag 34769360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 54779905 - 54779732
Alignment:
Q  1 cagtattgttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaac 100  Q
    |||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54779905 cagtgttgttttggaaaggggaaaaccgattgaaatttgaaacaatgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaac 54779806  T
Q  101 gttcaaattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactgattgaaac 174  Q
     |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  54779805 attcaaattaatgaaagagagtttatttacttaccaaacagtgttgttatggaaaggggaaaactgattgaaac 54779732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 35780124 - 35780311
Alignment:
Q  1 cagtattgttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaac 100  Q
    |||| |||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35780124 cagtgttgttttggaaaggggaaaatcgattgaaatttaaaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaac 35780223  T
Q  101 gttcaaattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactgattgaaactttgagagttgaga 188  Q
     |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||| |||||    
T  35780224 attcaaactaatgaaagagagtttatttacttaccaaacagtgttgttttggaaagggaaaaaccgattgaaaccttgagaggtgaga 35780311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 72 - 169
Target Start/End: Original strand, 10431126 - 10431223
Alignment:
Q  72 ctatcaatctctattttagcaatttcaacgttcaaattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactgatt 169  Q
    |||||||||||||||||| |||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||    
T  10431126 ctatcaatctctattttaacaatttcatcattcaaattaatgaaagagagtttatttacttaccaaacagtgttgttttgaaaagggaaaaactgatt 10431223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 47128498 - 47128457
Alignment:
Q  65 caaatctctatcaatctctattttagcaatttcaacgttcaa 106  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  47128498 caaatctctatcaatctctattttagcaatttcaacattcaa 47128457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 106
Target Start/End: Original strand, 23510385 - 23510424
Alignment:
Q  67 aatctctatcaatctctattttagcaatttcaacgttcaa 106  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  23510385 aatctttatcaatctctattttagcaatttcaacgttcaa 23510424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 10978577 - 10978539
Alignment:
Q  135 caaacagtgttgttttggaaaggggaaaactgattgaaa 173  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  10978577 caaacagtgttgttttggaaaggggaaaaccgattgaaa 10978539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 47128456 - 47128418
Alignment:
Q  135 caaacagtgttgttttggaaaggggaaaactgattgaaa 173  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  47128456 caaacagtgttgttttggaaaggggaaaaccgattgaaa 47128418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 48208920 - 48208882
Alignment:
Q  135 caaacagtgttgttttggaaaggggaaaactgattgaaa 173  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  48208920 caaacagtgttgttttggaaaggggaaaaccgattgaaa 48208882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 54779909 - 54779871
Alignment:
Q  135 caaacagtgttgttttggaaaggggaaaactgattgaaa 173  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  54779909 caaacagtgttgttttggaaaggggaaaaccgattgaaa 54779871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 106
Target Start/End: Original strand, 34769105 - 34769144
Alignment:
Q  67 aatctctatcaatctctattttagcaatttcaacgttcaa 106  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  34769105 aatctttatcaatctctattttagcaatttcaacattcaa 34769144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 106
Target Start/End: Original strand, 35780080 - 35780119
Alignment:
Q  67 aatctctatcaatctctattttagcaatttcaacgttcaa 106  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  35780080 aatctttatcaatctctattttagcaatttcaacattcaa 35780119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 9579063 - 9579101
Alignment:
Q  135 caaacagtgttgttttggaaaggggaaaactgattgaaa 173  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  9579063 caaacagtgttgttttggaaatgggaaaaccgattgaaa 9579101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 9584758 - 9584796
Alignment:
Q  135 caaacagtgttgttttggaaaggggaaaactgattgaaa 173  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  9584758 caaacagtgttgttttggaaatgggaaaaccgattgaaa 9584796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 35780120 - 35780158
Alignment:
Q  135 caaacagtgttgttttggaaaggggaaaactgattgaaa 173  Q
    |||||||||||||||||||||||||||||  ||||||||    
T  35780120 caaacagtgttgttttggaaaggggaaaatcgattgaaa 35780158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 19740817 - 19741028
Alignment:
Q  1 cagtattgttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaac 100  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  19740817 cagtgttgttttggaaaggggaaaaccgattgaaatttgaaacagtgttgttttcaacattcaacaaatctctatctatctctattttaacaatttcaac 19740916  T
Q  101 gttcaaattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactgattgaaactttgagagttgagaatcagtgatgat 200  Q
     |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  19740917 attcaaattaatgaaagagagtttatttacttaccaaacagtgttgttttggaaagggaaaaactgattgaaaccttgagagttgagaatcagtgatgat 19741016  T
Q  201 ttggtgaagaag 212  Q
    ||||||||||||    
T  19741017 ttggtgaagaag 19741028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 19740813 - 19740851
Alignment:
Q  135 caaacagtgttgttttggaaaggggaaaactgattgaaa 173  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  19740813 caaacagtgttgttttggaaaggggaaaaccgattgaaa 19740851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 34716018 - 34715785
Alignment:
Q  1 cagtattgttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaac 100  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34716018 cagtgttgttttggaaaggggaaaaccgattgaaatttgaaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaac 34715919  T
Q  101 gttcaaattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactgattgaaactttgagagttgagaatcagtgatgat 200  Q
     ||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||    
T  34715918 attcaaattaatgaaagaaagtttatttacttaccaaacaatgttgttttggaaagggaaaaactgatttaaaccttgagagttgagaatcagtgatgat 34715819  T
Q  201 ttggtgaagaa---gaaggaaagcctgatgatgt 231  Q
    |||||||||||   |||||||| |||||||||||    
T  34715818 ttggtgaagaagaagaaggaaaacctgatgatgt 34715785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 34693606 - 34693373
Alignment:
Q  1 cagtattgttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaac 100  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34693606 cagtgttgttttggaaaggggaaaaccgattgaaatttgaaacagtgttgttttcaacattcaataaatctctatcaatctctattttagcaatttcaac 34693507  T
Q  101 gttcaaattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactgattgaaactttgagagttgagaatcagtgatgat 200  Q
     ||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||    
T  34693506 attcaaattaatgaaagaaagtttatttacttaccaaacaatgttgttttggaaagggaaaaactgatttaaaccttgagagttgagaatcagtgatgat 34693407  T
Q  201 ttggtgaagaa---gaaggaaagcctgatgatgt 231  Q
    |||||||||||   |||||||| |||||||||||    
T  34693406 ttggtgaagaagaagaaggaaaacctgatgatgt 34693373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 6 - 231
Target Start/End: Original strand, 29940179 - 29940411
Alignment:
Q  6 ttgttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaacgttca 105  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29940179 ttgttttggaaaggggaaaaccgattgaaatttgaaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaacattca 29940278  T
Q  106 aattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactgattgaaactttgagagttga----------gaatcagtg 195  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||          |||||||||    
T  29940279 aattaatgaaagagagtttatttacttaccagacagtgttgttttggaaaggggaaaattgattgaaaccttgagagttgagagtctacgtgaatcagtg 29940378  T
Q  196 atgatttggtgaagaagaaggaaagcctgatgatgt 231  Q
    ||||||||||   |||||||||||||||||||||||    
T  29940379 atgatttggt---gaagaaggaaagcctgatgatgt 29940411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 105 - 183
Target Start/End: Complemental strand, 40445347 - 40445272
Alignment:
Q  105 aaattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactgattgaaactttgagagt 183  Q
    ||||||||||||||||| | |||||||||||||||| |||  |||||||||||||||||| ||||| ||| ||||||||    
T  40445347 aaattaatgaaagagaggttatttacttaccaaacaatgt--ttttggaaaggggaaaac-gattggaaccttgagagt 40445272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 29940128 - 29940169
Alignment:
Q  65 caaatctctatcaatctctattttagcaatttcaacgttcaa 106  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  29940128 caaatctctatcaatctctattttagcaatttcaacattcaa 29940169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 40445424 - 40445383
Alignment:
Q  65 caaatctctatcaatctctattttagcaatttcaacgttcaa 106  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  40445424 caaatctctatcaatctctattttagcaatttcaacattcaa 40445383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 34693610 - 34693572
Alignment:
Q  135 caaacagtgttgttttggaaaggggaaaactgattgaaa 173  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  34693610 caaacagtgttgttttggaaaggggaaaaccgattgaaa 34693572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 34716022 - 34715984
Alignment:
Q  135 caaacagtgttgttttggaaaggggaaaactgattgaaa 173  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  34716022 caaacagtgttgttttggaaaggggaaaaccgattgaaa 34715984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 106
Target Start/End: Complemental strand, 34693650 - 34693611
Alignment:
Q  67 aatctctatcaatctctattttagcaatttcaacgttcaa 106  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  34693650 aatctttatcaatctctattttagcaatttcaacattcaa 34693611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 106
Target Start/End: Complemental strand, 34716062 - 34716023
Alignment:
Q  67 aatctctatcaatctctattttagcaatttcaacgttcaa 106  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  34716062 aatctttatcaatctctattttagcaatttcaacattcaa 34716023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 29940170 - 29940208
Alignment:
Q  135 caaacagtgttgttttggaaaggggaaaactgattgaaa 173  Q
    ||||||| |||||||||||||||||||||| ||||||||    
T  29940170 caaacagagttgttttggaaaggggaaaaccgattgaaa 29940208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 9 - 212
Target Start/End: Complemental strand, 5316217 - 5316014
Alignment:
Q  9 ttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaacgttcaaat 108  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||    
T  5316217 ttttggaaaggggaaaaccaattgaaatttgaaacagtgttgttttcaacattcaacaaatttatatcaatctctattttagcaatttcaacattcaaat 5316118  T
Q  109 taatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactgattgaaactttgagagttgagaatcagtgatgatttggtgaa 208  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5316117 taatgaaagagagtttatttacttaccaaacagtgttgttttggaaaggggaaaactgattgaaaccttgagagttgagaatcagtgatgatttggtgaa 5316018  T
Q  209 gaag 212  Q
    ||||    
T  5316017 gaag 5316014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 21741503 - 21741714
Alignment:
Q  1 cagtattgttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaac 100  Q
    |||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||    
T  21741503 cagtgttgttttgaaaaggggaaaaccgattgaaatttgaaacagtgttgttttcaacattcaacaaatttttatcaatctttattttagcaatttcaac 21741602  T
Q  101 gttcaaattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactgattgaaactttgagagttgagaatcagtgatgat 200  Q
     |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  21741603 attcaaattaatgaaagagagtttatttacttaccaaacagtgttgttttggaaaggggaaaactgattgaaaccttgagagttgagaatcagtgatgat 21741702  T
Q  201 ttggtgaagaag 212  Q
    ||||||||||||    
T  21741703 ttggtgaagaag 21741714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 50881014 - 50880804
Alignment:
Q  1 cagtattgttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaac 100  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  50881014 cagtattgttttgaaaaggggaaaaccgattgaaatttgaaacagtgttgttttcaacattcaacaaatcactatcaatctctattttagcaatttcaac 50880915  T
Q  101 gttcaaattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactgattgaaactttgagagttgagaatcagtgatgat 200  Q
     ||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||| |||||| |||||||| |||||||||||||||||||| | ||    
T  50880914 attcaaattaatgaaagacagtttatttacttaccaaacagt-ttgttttggaaagggaaaaacttattgaaaccttgagagttgagaatcagtggttat 50880816  T
Q  201 ttggtgaagaag 212  Q
    ||||||||||||    
T  50880815 ttggtgaagaag 50880804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 6 - 215
Target Start/End: Original strand, 4977518 - 4977734
Alignment:
Q  6 ttgttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaacgttca 105  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4977518 ttgttttggacaggggaaaaccgattgaaatttgaaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaacattca 4977617  T
Q  106 aattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactgattgaaactttgagagttgag-------aatcagtgatg 198  Q
    ||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||  |||||||| ||||||||||||       |||||||||||    
T  4977618 aattaatgaaagagagtttctttacttaccaaacaatgttgttttggaaaggggaaaaccaattgaaaccttgagagttgagagtctacaatcagtgatg 4977717  T
Q  199 atttggtgaagaagaag 215  Q
    |||||||||| ||||||    
T  4977718 atttggtgaacaagaag 4977734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 50881124 - 50881019
Alignment:
Q  1 cagtattgttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaac 100  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  50881124 cagtattgttttgaaaaggggaaaaccgattgaaatttgaaacagtgttgttttcaacattcaacaaatcactatcaatctctattttagcaatttcaac 50881025  T
Q  101 gttcaa 106  Q
     |||||    
T  50881024 attcaa 50881019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 43 - 173
Target Start/End: Complemental strand, 23182310 - 23182180
Alignment:
Q  43 cagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaacgttcaaattaatgaaagagagttgatttacttaccaaacagt 142  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||| ||||||||||  ||||||||||||| |||    
T  23182310 cagtgttgttctcaacattcaacaaatctctatcaatctctattttagggatttcaacattcaaattaattaaagagagtttctttacttaccaaatagt 23182211  T
Q  143 gttgttttggaaaggggaaaactgattgaaa 173  Q
    ||||| ||||||||||||||||  |||||||    
T  23182210 gttgtgttggaaaggggaaaaccaattgaaa 23182180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 4977445 - 4977512
Alignment:
Q  1 cagtattgttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaa 68  Q
    |||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4977445 cagtgttgttttggacaggggaaaaccgattgaaatttgaaacagtgttgttttcaacattcaacaaa 4977512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 4977399 - 4977440
Alignment:
Q  65 caaatctctatcaatctctattttagcaatttcaacgttcaa 106  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  4977399 caaatctctatcaatctctattttagcaatttcaacattcaa 4977440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 5316271 - 5316230
Alignment:
Q  65 caaatctctatcaatctctattttagcaatttcaacgttcaa 106  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  5316271 caaatctctatcaatctctattttagcaatttcaacattcaa 5316230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 106
Target Start/End: Original strand, 21741459 - 21741498
Alignment:
Q  67 aatctctatcaatctctattttagcaatttcaacgttcaa 106  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  21741459 aatctttatcaatctctattttagcaatttcaacattcaa 21741498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 106
Target Start/End: Complemental strand, 50881168 - 50881129
Alignment:
Q  67 aatctctatcaatctctattttagcaatttcaacgttcaa 106  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  50881168 aatctttatcaatctctattttagcaatttcaacattcaa 50881129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 4977441 - 4977479
Alignment:
Q  135 caaacagtgttgttttggaaaggggaaaactgattgaaa 173  Q
    ||||||||||||||||||| |||||||||| ||||||||    
T  4977441 caaacagtgttgttttggacaggggaaaaccgattgaaa 4977479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 21741499 - 21741537
Alignment:
Q  135 caaacagtgttgttttggaaaggggaaaactgattgaaa 173  Q
    ||||||||||||||||| |||||||||||| ||||||||    
T  21741499 caaacagtgttgttttgaaaaggggaaaaccgattgaaa 21741537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 174; Significance: 9e-94; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 41878635 - 41878423
Alignment:
Q  1 cagtattgttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaac 100  Q
    |||| |||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  41878635 cagtgttgttttggaaaggggaaaaccgattgaaaattgaaacaatgttgttttcaacattcaacaaatctctatcaatctctattttaacaatttcaac 41878536  T
Q  101 gttcaaattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactgattgaaactttgagagttgagaatcagtgatgat 200  Q
     |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  41878535 attcaaattaatgaaagagagtttatttacttaccaaacaatgttgttttggaaaggggaaaactgattgaaac-ttgagagttgagaatcagtgatgat 41878437  T
Q  201 ttggtgaagaagaa 214  Q
    ||||||||||||||    
T  41878436 ttggtgaagaagaa 41878423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 54 - 173
Target Start/End: Complemental strand, 45472679 - 45472560
Alignment:
Q  54 tcaacattcaacaaatctctatcaatctctattttagcaatttcaacgttcaaattaatgaaagagagttgatttacttaccaaacagtgttgttttgga 153  Q
    |||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||  ||||||||||||| ||||||||||||||    
T  45472679 tcaacattcaacaaatctctatcaatctctattttagagatttcaacattcaaattaatgaaagagagtttctttacttaccaaatagtgttgttttgga 45472580  T
Q  154 aaggggaaaactgattgaaa 173  Q
    |||||||||||  |||||||    
T  45472579 aaggggaaaaccaattgaaa 45472560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 41878639 - 41878601
Alignment:
Q  135 caaacagtgttgttttggaaaggggaaaactgattgaaa 173  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  41878639 caaacagtgttgttttggaaaggggaaaaccgattgaaa 41878601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 106
Target Start/End: Complemental strand, 41878679 - 41878640
Alignment:
Q  67 aatctctatcaatctctattttagcaatttcaacgttcaa 106  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  41878679 aatctttatcaatctctattttagcaatttcaacattcaa 41878640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 3954466 - 3954692
Alignment:
Q  1 cagtattgttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaac 100  Q
    |||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3954466 cagtgttgttttggaaaggggaaaaccgattgaaatttgaaacagggttgttttcaacattcaacaaatctctatcaatctctattttaacaatttcaac 3954565  T
Q  101 gttcaaattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactgattgaaactttgagagttgagaatcagtgatgat 200  Q
     |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||    
T  3954566 attcaaattaatgaaagagagtttatttacttaccaaacagtgttgttttggaaatgggaaaactgattgaaac-ttgagagttgagaatcactgatgat 3954664  T
Q  201 ttggtgaagaagaaggaaagcctgatgatgt 231  Q
    |||||   |||||||||||| ||||||||||    
T  3954665 ttggt---gaagaaggaaagtctgatgatgt 3954692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 8073662 - 8073802
Alignment:
Q  1 cagtattgttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaac 100  Q
    |||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8073662 cagtgttgttttagaaaggggaaaaccgattgaaatttgaaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaac 8073761  T
Q  101 gttcaaattaatgaaagagagttgatttacttaccaaacag 141  Q
     |||||||||||||||||||||| |||||||||||||||||    
T  8073762 attcaaattaatgaaagagagtttatttacttaccaaacag 8073802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 8073616 - 8073657
Alignment:
Q  65 caaatctctatcaatctctattttagcaatttcaacgttcaa 106  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  8073616 caaatctctatcaatctctattttagcaatttcaacattcaa 8073657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 3954462 - 3954500
Alignment:
Q  135 caaacagtgttgttttggaaaggggaaaactgattgaaa 173  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  3954462 caaacagtgttgttttggaaaggggaaaaccgattgaaa 3954500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 106
Target Start/End: Original strand, 3954422 - 3954461
Alignment:
Q  67 aatctctatcaatctctattttagcaatttcaacgttcaa 106  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  3954422 aatctttatcaatctctattttagcaatttcaacattcaa 3954461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 8073658 - 8073696
Alignment:
Q  135 caaacagtgttgttttggaaaggggaaaactgattgaaa 173  Q
    |||||||||||||||| ||||||||||||| ||||||||    
T  8073658 caaacagtgttgttttagaaaggggaaaaccgattgaaa 8073696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 188
Target Start/End: Original strand, 8073802 - 8073832
Alignment:
Q  158 ggaaaactgattgaaactttgagagttgaga 188  Q
    |||||||||||||||||||||||||||||||    
T  8073802 ggaaaactgattgaaactttgagagttgaga 8073832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 27078659 - 27078448
Alignment:
Q  1 cagtattgttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaac 100  Q
    |||| |||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27078659 cagtgttgttttgaaaaggggaaaaccgattgtaatttgaaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaac 27078560  T
Q  101 gttcaaattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactgattgaaactttgagagttgagaatcagtgatgat 200  Q
     |||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  27078559 attcaaattaatgaaagagagtttatttacttatcaaactgtgttgttttggaaaggggaaaactgattgaaatcttgagagttgagaatcagtgatgat 27078460  T
Q  201 ttggtgaagaag 212  Q
    ||||||||||||    
T  27078459 ttggtgaagaag 27078448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 22987059 - 22987264
Alignment:
Q  1 cagtattgttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaac 100  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  22987059 cagtgttgttttggaaaggggaaaaccgattgaaatttgaaacagtgttgttttcaacattctacaaatctctatcaatctctattttagcaatttcaac 22987158  T
Q  101 gttcaaattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactgattgaaactttgagagttgagaatcagtgatgat 200  Q
     |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||    
T  22987159 attcaaattaatgaaagagagtttatttacttaccaaacagtattgttttggaaaggggaaaactgattgaaaccttgagagttgagaatgaatgatgat 22987258  T
Q  201 ttggtg 206  Q
    ||||||    
T  22987259 ttggtg 22987264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 30853735 - 30853525
Alignment:
Q  1 cagtattgttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaac 100  Q
    |||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  30853735 cagtgttgttttggaaaggggaaaaccgattgaaatttgacacagtgttgttttcaacattcaacaaatctctatcaatctctattt-agcaatttcaac 30853637  T
Q  101 gttcaaattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactgattgaaactttgagagttgagaatcagtgatgat 200  Q
     ||||||||||| |||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||    
T  30853636 attcaaattaattaaagagagtttatttacttaccaaacactattgttttggaaaggggaaaactgattgaaatcttgagagttgagaatcaatgatgat 30853537  T
Q  201 ttggtgaagaag 212  Q
    ||||||||||||    
T  30853536 ttggtgaagaag 30853525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 23285500 - 23285721
Alignment:
Q  1 cagtattgttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaac 100  Q
    |||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23285500 cagtgttgttttggaaaggggaaaatcgattgaaatttgaaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaac 23285599  T
Q  101 gttcaaattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactgattgaaactttgagagttgagaatcagtgatgat 200  Q
     |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||          | |||| |||||||||    
T  23285600 attcaaattaatgaaagagagtttatttacttaccaaacagtgttgttttggaaaggggaaaactgattgaaac---------cgtgaattagtgatgat 23285690  T
Q  201 ttggtgaagaagaaggaaagcctgatgatgt 231  Q
    |||||||||||||| ||||| ||||||||||    
T  23285691 ttggtgaagaagaacgaaagtctgatgatgt 23285721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 58 - 210
Target Start/End: Original strand, 16592486 - 16592638
Alignment:
Q  58 cattcaacaaatctctatcaatctctattttagcaatttcaacgttcaaattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaagg 157  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  16592486 cattcaacaaatctctatcaatctctattttagcaatttcaacattcaaattaatgaaagagagtttatttacttaccaaacagtgttgttttgaaaagg 16592585  T
Q  158 ggaaaactgattgaaactttgagagttgagaatcagtgatgatttggtgaaga 210  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  16592586 ggaaaactgattgaaactttgagagttgagaataattgatgatttggtgaaga 16592638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 23285450 - 23285491
Alignment:
Q  65 caaatctctatcaatctctattttagcaatttcaacgttcaa 106  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  23285450 caaatctctatcaatctctattttagcaatttcaacattcaa 23285491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 22987055 - 22987093
Alignment:
Q  135 caaacagtgttgttttggaaaggggaaaactgattgaaa 173  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  22987055 caaacagtgttgttttggaaaggggaaaaccgattgaaa 22987093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 30853739 - 30853701
Alignment:
Q  135 caaacagtgttgttttggaaaggggaaaactgattgaaa 173  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  30853739 caaacagtgttgttttggaaaggggaaaaccgattgaaa 30853701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 106
Target Start/End: Complemental strand, 30853779 - 30853740
Alignment:
Q  67 aatctctatcaatctctattttagcaatttcaacgttcaa 106  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  30853779 aatctttatcaatctctattttagcaatttcaacattcaa 30853740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 23285496 - 23285534
Alignment:
Q  135 caaacagtgttgttttggaaaggggaaaactgattgaaa 173  Q
    |||||||||||||||||||||||||||||  ||||||||    
T  23285496 caaacagtgttgttttggaaaggggaaaatcgattgaaa 23285534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 27078705 - 27078664
Alignment:
Q  65 caaatctctatcaatctctattttagcaatttcaacgttcaa 106  Q
    ||||||||||||||||||||||| |||||||| ||| |||||    
T  27078705 caaatctctatcaatctctatttgagcaattttaacattcaa 27078664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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