View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8421_high_3 (Length: 303)

Name: NF8421_high_3
Description: NF8421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8421_high_3
NF8421_high_3
[»] chr2 (19 HSPs)
chr2 (1-293)||(28102274-28102560)
chr2 (200-293)||(27968452-27968545)
chr2 (200-293)||(28092042-28092135)
chr2 (210-288)||(10849930-10850008)
chr2 (207-288)||(10493375-10493456)
chr2 (209-288)||(10545591-10545670)
chr2 (207-274)||(7481724-7481791)
chr2 (209-288)||(10463876-10463955)
chr2 (207-288)||(7478124-7478205)
chr2 (209-288)||(10507936-10508015)
chr2 (209-288)||(10518820-10518899)
chr2 (210-288)||(10475073-10475151)
chr2 (207-288)||(10489302-10489383)
chr2 (87-130)||(10849809-10849852)
chr2 (75-109)||(10489168-10489202)
chr2 (75-111)||(10474945-10474981)
chr2 (75-109)||(7478290-7478324)
chr2 (85-129)||(10507807-10507851)
chr2 (210-286)||(10863420-10863496)
[»] chr8 (1 HSPs)
chr8 (247-287)||(44343083-44343123)


Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 28102560 - 28102274
Alignment:
Q  1 tcgatcgtcacctaagccgccagatagtgatccacgtgaggctgcgttccgagatgaaaatcattgacttgcaatcaacactttaagacaatatgttgat 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28102560 tcgatcgtcacctaacccgccagatagtgatccacgtgaggctgcgttccgagatgaaaatcattgacttgcaatcaacactttaagacaatatgttgat 28102461  T
Q  101 aaactatttattagaagtaaaacatatgacggatatcttcgcaaaacgtaaaccggcctagtgattaacatgtaaaactcctatnnnnnnnnnnnnnnnt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               |    
T  28102460 aaactatttattagaagtaaaacatatgacggatatcttcgcaaaacgtaaaccggcctagtgattaacatgtaaaactcctat------aaaaaataat 28102367  T
Q  201 tgttaacaacacacctcaagatcagttgctgatatgggcttatcactgcaaaaagcttcagcaagtttatcgtccacctttgacacaggttct 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  28102366 tgttaacaacacacctcaagatcagttgctgatatgggcttatcactgcaaaaagcttcagcaagtttttcgtccacctttgacacagtttct 28102274  T

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Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 200 - 293
Target Start/End: Original strand, 27968452 - 27968545
Alignment:
Q  200 ttgttaacaacacacctcaagatcagttgctgatatgggcttatcactgcaaaaagcttcagcaagtttatcgtccacctttgacacaggttct 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  27968452 ttgttaacaacacacctcaagatcagttgctgatatgggcttatcgctgcaaaaagcttcagcaagtttttcgtccacctttgacacagtttct 27968545  T

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Target: chr2; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 200 - 293
Target Start/End: Complemental strand, 28092135 - 28092042
Alignment:
Q  200 ttgttaacaacacacctcaagatcagttgctgatatgggcttatcactgcaaaaagcttcagcaagtttatcgtccacctttgacacaggttct 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  28092135 ttgttaacaacacacctcaagatcagttgctgatatgggcttatcgctgcaaaaagcttcagcaagtttttcgtccacctttgacacagtttct 28092042  T

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Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 210 - 288
Target Start/End: Original strand, 10849930 - 10850008
Alignment:
Q  210 cacacctcaagatcagttgctgatatgggcttatcactgcaaaaagcttcagcaagtttatcgtccacctttgacacag 288  Q
    |||||||||||||||| ||||||||||||||| |||| || |||||||||||||||||||||||||||||  |||||||    
T  10849930 cacacctcaagatcaggtgctgatatgggcttgtcacagcgaaaagcttcagcaagtttatcgtccacctcagacacag 10850008  T

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Target: chr2; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 207 - 288
Target Start/End: Original strand, 10493375 - 10493456
Alignment:
Q  207 caacacacctcaagatcagttgctgatatgggcttatcactgcaaaaagcttcagcaagtttatcgtccacctttgacacag 288  Q
    ||||||||||||||||||| |||||| ||||| || ||||||| |||||||||||||||||||||||||||||  |||||||    
T  10493375 caacacacctcaagatcagctgctgagatgggattgtcactgctaaaagcttcagcaagtttatcgtccacctcggacacag 10493456  T

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Target: chr2; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 209 - 288
Target Start/End: Original strand, 10545591 - 10545670
Alignment:
Q  209 acacacctcaagatcagttgctgatatgggcttatcactgcaaaaagcttcagcaagtttatcgtccacctttgacacag 288  Q
    ||||||||||||||||| |||||| |||||||| || ||||||||||||||||||||||||||||| |||| ||| ||||    
T  10545591 acacacctcaagatcagctgctgaaatgggcttgtcgctgcaaaaagcttcagcaagtttatcgtctacctctgatacag 10545670  T

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Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 207 - 274
Target Start/End: Complemental strand, 7481791 - 7481724
Alignment:
Q  207 caacacacctcaagatcagttgctgatatgggcttatcactgcaaaaagcttcagcaagtttatcgtc 274  Q
    |||||||||||||||||||  ||||| |||||||| ||||||| ||||||||||||||||||||||||    
T  7481791 caacacacctcaagatcagcggctgagatgggcttgtcactgctaaaagcttcagcaagtttatcgtc 7481724  T

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Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 209 - 288
Target Start/End: Original strand, 10463876 - 10463955
Alignment:
Q  209 acacacctcaagatcagttgctgatatgggcttatcactgcaaaaagcttcagcaagtttatcgtccacctttgacacag 288  Q
    |||||||| |||||||| |||||||||||||||  ||||||||||||| |||||||||||||| ||||| | ||||||||    
T  10463876 acacacctgaagatcagctgctgatatgggcttgccactgcaaaaagcctcagcaagtttatcatccacgtctgacacag 10463955  T

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Target: chr2; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 207 - 288
Target Start/End: Complemental strand, 7478205 - 7478124
Alignment:
Q  207 caacacacctcaagatcagttgctgatatgggcttatcactgcaaaaagcttcagcaagtttatcgtccacctttgacacag 288  Q
    ||||||||||||||||||| | ||||  ||| ||| |||||||||||||||||||||||||||| ||||||||  |||||||    
T  7478205 caacacacctcaagatcagctactgagttggacttgtcactgcaaaaagcttcagcaagtttattgtccacctcggacacag 7478124  T

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Target: chr2; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 209 - 288
Target Start/End: Original strand, 10507936 - 10508015
Alignment:
Q  209 acacacctcaagatcagttgctgatatgggcttatcactgcaaaaagcttcagcaagtttatcgtccacctttgacacag 288  Q
    ||||||||||||||||| ||||||||||||||| ||||  |  ||||||||||||||||||||||| ||||  |||||||    
T  10507936 acacacctcaagatcagctgctgatatgggcttgtcaccaccgaaagcttcagcaagtttatcgtcaacctcggacacag 10508015  T

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Target: chr2; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 209 - 288
Target Start/End: Original strand, 10518820 - 10518899
Alignment:
Q  209 acacacctcaagatcagttgctgatatgggcttatcactgcaaaaagcttcagcaagtttatcgtccacctttgacacag 288  Q
    |||||||| ||||||||  ||||||||||||||  || ||||||||||||||||||||||| |||||||||  |||||||    
T  10518820 acacaccttaagatcagcagctgatatgggcttgccaatgcaaaaagcttcagcaagtttaccgtccacctcggacacag 10518899  T

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Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 210 - 288
Target Start/End: Original strand, 10475073 - 10475151
Alignment:
Q  210 cacacctcaagatcagttgctgatatgggcttatcactgcaaaaagcttcagcaagtttatcgtccacctttgacacag 288  Q
    |||||||||||||||| |||||| |||||||| ||||  |  |||||||| |||||||||||||||||||  |||||||    
T  10475073 cacacctcaagatcagctgctgagatgggcttgtcaccactgaaagcttctgcaagtttatcgtccacctcggacacag 10475151  T

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Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 288
Target Start/End: Original strand, 10489302 - 10489383
Alignment:
Q  207 caacacacctcaagatcagttgctgatatgggcttatcactgcaaaaagcttcagcaagtttatcgtccacctttgacacag 288  Q
    |||||||||| |||||||| ||||||||| ||||| ||||     ||||||||||||||||||||||||||||  |||||||    
T  10489302 caacacacctgaagatcagctgctgatataggcttgtcaccattgaaagcttcagcaagtttatcgtccacctcggacacag 10489383  T

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Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 130
Target Start/End: Original strand, 10849809 - 10849852
Alignment:
Q  87 gacaatatgttgataaactatttattagaagtaaaacatatgac 130  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||    
T  10849809 gacaatatgttgataaactatttgttagaagtagaacatatgac 10849852  T

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Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 109
Target Start/End: Original strand, 10489168 - 10489202
Alignment:
Q  75 tcaacactttaagacaatatgttgataaactattt 109  Q
    |||||||||||||||||||||||||||||||||||    
T  10489168 tcaacactttaagacaatatgttgataaactattt 10489202  T

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Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 10474945 - 10474981
Alignment:
Q  75 tcaacactttaagacaatatgttgataaactatttat 111  Q
    ||||||||| |||||||||||||||||||||||||||    
T  10474945 tcaacacttgaagacaatatgttgataaactatttat 10474981  T

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Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 109
Target Start/End: Complemental strand, 7478324 - 7478290
Alignment:
Q  75 tcaacactttaagacaatatgttgataaactattt 109  Q
    ||||||||| |||||||||||||||||||||||||    
T  7478324 tcaacacttgaagacaatatgttgataaactattt 7478290  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 129
Target Start/End: Original strand, 10507807 - 10507851
Alignment:
Q  85 aagacaatatgttgataaactatttattagaagtaaaacatatga 129  Q
    ||||||||||||||||||||||||| ||| ||  |||||||||||    
T  10507807 aagacaatatgttgataaactatttgttaaaacaaaaacatatga 10507851  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 286
Target Start/End: Original strand, 10863420 - 10863496
Alignment:
Q  210 cacacctcaagatcagttgctgatatgggcttatcactgcaaaaagcttcagcaagtttatcgtccacctttgacac 286  Q
    ||||||||||| |||| | |||||||  |  | |||||| ||| |||||||||||||||||| ||||||| ||||||    
T  10863420 cacacctcaagttcagctcctgatataagtctgtcactggaaagagcttcagcaagtttatcatccacctctgacac 10863496  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 287
Target Start/End: Original strand, 44343083 - 44343123
Alignment:
Q  247 tgcaaaaagcttcagcaagtttatcgtccacctttgacaca 287  Q
    |||||||||||| |||||||||||| || ||||||||||||    
T  44343083 tgcaaaaagcttgagcaagtttatcatctacctttgacaca 44343123  T

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