View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8421_high_4 (Length: 251)
Name: NF8421_high_4
Description: NF8421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8421_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 7963135 - 7963377
Alignment:
| Q |
1 |
taaaatcttgcacttatgtgtgagtttcgatgataattattgattcgtctattnnnnnnnnnggagagtaaacaagttaaacattatcctatggaggtca |
100 |
Q |
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| T |
7963135 |
taaaatcttgcacttgtgtatgagtttcgatgataattattgattcgtctattaaaaaaaa-ggagagtaaacaagttaaacattatcctatggaggtca |
7963233 |
T |
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| Q |
101 |
aagtgactaggtgtattctgcaataattgaaagataaataagataattataagagagaggagaggatgag------gttgggacgtgattagttttgctt |
194 |
Q |
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| T |
7963234 |
aagtgactaggtgtattctgcaataattgaaagataaataaaataattataagagagaggagaggatgaggttgaggttgggacgtgattagttttgctt |
7963333 |
T |
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| Q |
195 |
gtccttgaccagacaacacatttcctataaggcataatgaagaa |
238 |
Q |
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| T |
7963334 |
gtccttgatcagacaacacatttcctataaggcataatgaagaa |
7963377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 163 - 238
Target Start/End: Original strand, 8005679 - 8005758
Alignment:
| Q |
163 |
aggatgaggttgggacgtgattagttttgcttgtc----cttgaccagacaacacatttcctataaggcataatgaagaa |
238 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
8005679 |
aggatgaggttgggacgtgattagttttgcttgtccttgcttgaccaaacaacacatttcctataaggcataatgaagaa |
8005758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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