View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8421_low_1 (Length: 696)
Name: NF8421_low_1
Description: NF8421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8421_low_1 |
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| [»] scaffold0272 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 588; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 20 - 678
Target Start/End: Complemental strand, 10910161 - 10909490
Alignment:
| Q |
20 |
tcagagacttcttcaaaccattgatcgtgcttctgttgtggacacaatcaaacaagacttccaaagatcttattttgtcacaggtttgatcacatgattt |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
10910161 |
tcagagacttcttcaaaccattgatcgtgcttctgttgtggacacaatcaaacaagacttccaaagatcttattttgtcacaggtttgattacatgattt |
10910062 |
T |
|
| Q |
120 |
ttcttatcttatgtggattaatactaatttctttcattcaattttaagtatggttgtaatttgtaaactactttgtcttttttacacatcatttggatga |
219 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
10910061 |
ttcttatcttatgtggattaatactaatttctttcattcaattttaagtatggttgtaatttgtaaactactttgtcttttttacacaccatttggatga |
10909962 |
T |
|
| Q |
220 |
ttgatttgtgtggaaaggcatgactattcagagttgttaggtatgactcgtagttactcataagtgggcaggtcggccaggctcaaacatttgttgggtt |
319 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10909961 |
ttgatttgtgtagaaaggcatgactattcagagttgttaggtatgactcgtagttactcataagtgggcaggtcggccaggctcaaacatttgttgggtt |
10909862 |
T |
|
| Q |
320 |
atgattggggggttgctggaggcttcatatcagatgtaagttagt-------------tacactagttagttaagttagattgattaaaataaactaaga |
406 |
Q |
| |
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|||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
10909861 |
atgattggggggttgctggaggcttcatattaaatgtaagttagttacaataattagttacactagttagttaagttagattgattaaaataaactaaga |
10909762 |
T |
|
| Q |
407 |
gaaagatgaactttagagctgaaatgaaagaatgagaaaaagttgattacaatctgtgtaaatacacccgcgggggtgtggaatggtttgtggagatggc |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10909761 |
gaaagatgaactttagagctgaaatgaaagaatgagaaaaagttgattacaatcggtgtaaatacacccgcgggggtgtggaatggtttgtggagatggc |
10909662 |
T |
|
| Q |
507 |
ttggtttatccttggtgttacctcataatctgttcttgttgtgggagggttggagtggtgctgcgaggaataataagattcatagaggttttcggttgat |
606 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
10909661 |
ttggtttttccttggtgttacctcataatctgttcttgttgtgggagggttggaatggtgctgcgaggaataataagattcgtagaggttttcggttgat |
10909562 |
T |
|
| Q |
607 |
ttggcacgccgcggttcggagtttatggagggtgagaaatgatcgaattttcaataattctaattgtgatgt |
678 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10909561 |
ttggcacgccgcggtttggagtttatggagggtgagaaatgatcgaattttcaataattctaattgtgatgt |
10909490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 599 - 660
Target Start/End: Original strand, 27753790 - 27753851
Alignment:
| Q |
599 |
cggttgatttggcacgccgcggttcggagtttatggagggtgagaaatgatcgaattttcaa |
660 |
Q |
| |
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||||||||||||||||||| || ||| ||||||||||||||||||||| ||||||||||| |
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| T |
27753790 |
cggttgatttggcacgccgtagtgtggaatttatggagggtgagaaatgaccgaattttcaa |
27753851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 572; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 20 - 678
Target Start/End: Original strand, 13725268 - 13725939
Alignment:
| Q |
20 |
tcagagacttcttcaaaccattgatcgtgcttctgttgtggacacaatcaaacaagacttccaaagatcttattttgtcacaggtttgatcacatgattt |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13725268 |
tcagagacttcttcaaaccattgatcgtgcttctgttgcggacacaatcaaacaagacttccaaagatcttattttgtcacaggtttgatcacatgattt |
13725367 |
T |
|
| Q |
120 |
ttcttatcttatgtggattaatactaatttctttcattcaattttaagtatggttgtaatttgtaaactactttgtcttttttacacatcatttggatga |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13725368 |
ttcttatcttatgtggattaatactaatttctttcattcaattttaagtatggttgtaatttgtaaactactttgtcttttttacacatcatttggatga |
13725467 |
T |
|
| Q |
220 |
ttgatttgtgtggaaaggcatgactattcagagttgttaggtatgactcgtagttactcataagtgggcaggtcggccaggctcaaacatttgttgggtt |
319 |
Q |
| |
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||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
13725468 |
ttgatttgtgtagagaggcatgactattcagagttgttaggtatgactcgtagttactgataagtgggcaggtcggccaggctcaaacatttgttgggtt |
13725567 |
T |
|
| Q |
320 |
atgattggggggttgctggaggcttcatatcagatgtaag-------------ttagttacactagttagttaagttagattgattaaaataaactaaga |
406 |
Q |
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||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13725568 |
atgattgggggattgctggaggcttcatattagatgtaagttagttacaataattagttacactagttagttaagttagattgattaaaataaactaaga |
13725667 |
T |
|
| Q |
407 |
gaaagatgaactttagagctgaaatgaaagaatgagaaaaagttgattacaatctgtgtaaatacacccgcgggggtgtggaatggtttgtggagatggc |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13725668 |
gaaagatgaactttagagctgaaatgaaagaatgagaaaaagttgattacaatcggtgtaaatacacccgcgggggtgtggaatggtttgtggagatggc |
13725767 |
T |
|
| Q |
507 |
ttggtttatccttggtgttacctcataatctgttcttgttgtgggagggttggagtggtgctgcgaggaataataagattcatagaggttttcggttgat |
606 |
Q |
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||||||| ||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
13725768 |
ttggtttttccttggtgttacctcataatatgttcttgttatgggagggttggaatggtgctgcgaggaataataagattcgtagaggttttcggttgat |
13725867 |
T |
|
| Q |
607 |
ttggcacgccgcggttcggagtttatggagggtgagaaatgatcgaattttcaataattctaattgtgatgt |
678 |
Q |
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|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
13725868 |
ttggcacgccgcggtttggagtttatggagggcgagaaatgatcgaattttcaataattctaattgtgatgt |
13725939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 592 - 674
Target Start/End: Original strand, 26728799 - 26728881
Alignment:
| Q |
592 |
aggttttcggttgatttggcacgccgcggttcggagtttatggagggtgagaaatgatcgaattttcaataattctaattgtg |
674 |
Q |
| |
|
||||||||| ||||||||||| |||| ||| ||||| ||||||||| ||||||||| |||||||| || ||||| ||||||| |
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| T |
26728799 |
aggttttcgtttgatttggcatgccgtggtgtggagtatatggagggcgagaaatgagcgaatttttaacaattcaaattgtg |
26728881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 600 - 651
Target Start/End: Original strand, 2489 - 2540
Alignment:
| Q |
600 |
ggttgatttggcacgccgcggttcggagtttatggagggtgagaaatgatcg |
651 |
Q |
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||||||||||||||||||||||| ||||| | |||||||||||||||||||| |
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| T |
2489 |
ggttgatttggcacgccgcggtttggagtatttggagggtgagaaatgatcg |
2540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 481 - 528
Target Start/End: Complemental strand, 44685886 - 44685839
Alignment:
| Q |
481 |
ggtgtggaatggtttgtggagatggcttggtttatccttggtgttacc |
528 |
Q |
| |
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||||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
44685886 |
ggtgtggaatgctttgtggagatggcttggtttttccttggtgttacc |
44685839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 602 - 660
Target Start/End: Complemental strand, 41572709 - 41572651
Alignment:
| Q |
602 |
ttgatttggcacgccgcggttcggagtttatggagggtgagaaatgatcgaattttcaa |
660 |
Q |
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||||||||||| |||| || ||| ||||| ||||||||||||||||||||||||||| |
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| T |
41572709 |
ttgatttggcatgccgtagtgtggaatttattgagggtgagaaatgatcgaattttcaa |
41572651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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