View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8421_low_3 (Length: 479)
Name: NF8421_low_3
Description: NF8421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8421_low_3 |
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| [»] chr8 (1 HSPs) |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 15 - 479
Target Start/End: Original strand, 30054519 - 30055000
Alignment:
| Q |
15 |
agagacagtcaatgatttgatattagaaaactagtagtagccagttgagtaggactgcagattcatcttccaacgggcgatt---gaatccgatgtctgc |
111 |
Q |
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| T |
30054519 |
agagacagtcaatgatttgatattagaaaact-gtagtagccagttgagtaggactgcagattcgtcttccaaggggcgattaatgaatccgatgtctgc |
30054617 |
T |
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| Q |
112 |
atccttgtaaacgtgtttaacagaacaaagatggatatggcatggtttttggttgagagatccaataaaagaaaagttggaaagcaaatgagcagatatg |
211 |
Q |
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| T |
30054618 |
atccatgtaaacatgtttaacagaacaaagatggatatggcatggtttttggttgagagatccaataaaagaaaagttggaaagcaaatgagcagatatg |
30054717 |
T |
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| Q |
212 |
ttgcacatcaaactagcat---------atccatac------atagtcaaattgacaagtgtgtcacttgatatacaaagagtttctgcatcctccacaa |
296 |
Q |
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| T |
30054718 |
ttgccaatcaaactagcattggtatcaaatccatacccatatatagtcaaattgacaagtgtgtcacttgatatacaaagagtttctacatcctccacaa |
30054817 |
T |
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| Q |
297 |
gtataaaactttcaatgaccaaagtattcaaccatcatcgccagcgcgaaagtggaagaaccttacagccaaggtggttaaagcaggcaaattaagagag |
396 |
Q |
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| T |
30054818 |
gtctaaaactttcaatgaccaaagtattcaaccatcatcgccagcgcgaaagtggaagaaccttacagccaaggtggttaaagcaggcaaattaagagag |
30054917 |
T |
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| Q |
397 |
ttggggaagtatactttgttaaatactccaatacgaacgtgaatagaaaggtcaagagaagttaaagtttgagatgaaaataa |
479 |
Q |
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| T |
30054918 |
ttggggaagtatactttgttaaatactacaatacgaacgtgaatagaaaggtcaagagaagttaaagtttgagatgaaaataa |
30055000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 435 - 479
Target Start/End: Complemental strand, 5367997 - 5367953
Alignment:
| Q |
435 |
gtgaatagaaaggtcaagagaagttaaagtttgagatgaaaataa |
479 |
Q |
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| T |
5367997 |
gtgaatagaaaggtcaagagacgttaaggtttgagatgaaaataa |
5367953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 435 - 479
Target Start/End: Original strand, 8400207 - 8400251
Alignment:
| Q |
435 |
gtgaatagaaaggtcaagagaagttaaagtttgagatgaaaataa |
479 |
Q |
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| T |
8400207 |
gtgaagagaaaggtgaagagaagttaaagtttgagatgaaaataa |
8400251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 436 - 479
Target Start/End: Complemental strand, 5368802 - 5368759
Alignment:
| Q |
436 |
tgaatagaaaggtcaagagaagttaaagtttgagatgaaaataa |
479 |
Q |
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| T |
5368802 |
tgaatagaaaggtcaagtgacgttaaagtttgagatgaaaataa |
5368759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 436 - 479
Target Start/End: Complemental strand, 5374559 - 5374516
Alignment:
| Q |
436 |
tgaatagaaaggtcaagagaagttaaagtttgagatgaaaataa |
479 |
Q |
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| T |
5374559 |
tgaatagaaaggtcaagtgacgttaaagtttgagatgaaaataa |
5374516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 435 - 479
Target Start/End: Complemental strand, 5362781 - 5362737
Alignment:
| Q |
435 |
gtgaatagaaaggtcaagagaagttaaagtttgagatgaaaataa |
479 |
Q |
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| T |
5362781 |
gtgaatggaaaggtcaagagacgttaaggtttgagatgaaaataa |
5362737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 289
Target Start/End: Original strand, 45906383 - 45906437
Alignment:
| Q |
235 |
atacatagtcaaattgacaagtgtgtcacttgatatacaaagagtttctgcatcc |
289 |
Q |
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| T |
45906383 |
atacatagttaaattgacaagtgttccacttgatatgcaaagggtttttgcatcc |
45906437 |
T |
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