View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8421_low_4 (Length: 398)
Name: NF8421_low_4
Description: NF8421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8421_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 2e-87; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 53037087 - 53037279
Alignment:
| Q |
19 |
tgcatttcacttctgagtgggcacgacttgcgcgtggtgagcctgtgagaacaatgccatattttgatataaacgtgatgtcgtcaaggtcaaatgttaa |
118 |
Q |
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| T |
53037087 |
tgcatttcacttctgagtgggcacgacttgcgcgtggcgagcctgtgagaacaatgccatattttgatataaacgtgttgtcgtcaaggtcaaatgttaa |
53037186 |
T |
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| Q |
119 |
tgttaatgaatgggagtttaatgaacctccgttattgttaggaaattcgaataatgttgaagaaaggaagnnnnnnncaacggtggctatgct |
211 |
Q |
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| T |
53037187 |
tgttaatgaatgggagtttaatgaacctccgttattgttaggaaattcgaataatgttgaagaaaggaagaaaaaaacaacggtggctatgct |
53037279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 273 - 378
Target Start/End: Original strand, 53037341 - 53037446
Alignment:
| Q |
273 |
cctagcaatggtcgaggttatacgagatatgaaaccttaaccggtcatgtttggagaagtgcaagtaaagctagagggcatgcaaatgaccaacaaactt |
372 |
Q |
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| T |
53037341 |
cctagcaatggtcgaggttatacgagatatgaaaccttaaccggtcatgtttggagaagtgcaagtaaagctagagggcatgcaaatgaccaacaaactt |
53037440 |
T |
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| Q |
373 |
cgcttg |
378 |
Q |
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| T |
53037441 |
cgcttg |
53037446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 273 - 366
Target Start/End: Complemental strand, 39996251 - 39996158
Alignment:
| Q |
273 |
cctagcaatggtcgaggttatacgagatatgaaaccttaaccggtcatgtttggagaagtgcaagtaaagctagagggcatgcaaatgaccaac |
366 |
Q |
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| T |
39996251 |
cctagtaatggtcgaggttattcgaggtatgaaacagtaaccggtcatatttggagaagtgcatgtaaagcaagagagcataaaaatgaccaac |
39996158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 39996405 - 39996336
Alignment:
| Q |
119 |
tgttaatgaatgggagtttaatgaacctccgttattgttaggaaattcgaataatgttgaagaaaggaag |
188 |
Q |
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| T |
39996405 |
tgttaataaatgggagcctgatcaacttcctttattgttaggaaatttggataatgttgaagaaaggaag |
39996336 |
T |
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