View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8421_low_5 (Length: 372)
Name: NF8421_low_5
Description: NF8421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8421_low_5 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 23588835 - 23588473
Alignment:
| Q |
1 |
aatagcatcttcaattttcttcttatcatcagcagacaacttcgaagcaatcttgtcgtctttgattgtgttcctcatgttgtaggcatagttctcaagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23588835 |
aatagcatcttcaattttcttcttatcatcagcagacaacttcgaagcaatcttgtcgtctttgattgtgttcctcatgttgtaggcatagttctcaagt |
23588736 |
T |
|
| Q |
101 |
gcattcttggcctccactttctttttgtgctcctcgtcctcagacttgtacttttcagcttcctgcaccatcttctcaatttcttccttggagagcctac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23588735 |
gcattcttggcctccactttctttttgtgctcctcgtcctcagacttgtacttttcagcttcctgcaccatcttctcaatttcttccttggagagcctac |
23588636 |
T |
|
| Q |
201 |
ccttgtcattggtgattgtaatcttgtttttctgccctgttgtcttgtcctctgctgagacattcaaaatgccattggcatcaatgtcaaagcagacagt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23588635 |
ccttgtcattggtgattgtaatcttgtttttctgccctgttgtcttgtcctctgctgagacattcaaaatgccattggcatcaatgtcaaagcagacagt |
23588536 |
T |
|
| Q |
301 |
gatctgaggaacaccccttggagcaggaggtatacccgacaactcaaacttgcccaacaaatt |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
23588535 |
gatctgaggaacaccccttggagcaggagggatacccgacaactcaaacttgcccaacaaatt |
23588473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 23597687 - 23597325
Alignment:
| Q |
1 |
aatagcatcttcaattttcttcttatcatcagcagacaacttcgaagcaatcttgtcgtctttgattgtgttcctcatgttgtaggcatagttctcaagt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23597687 |
aatagcatcttcaattttcttcttatcatcagccgacaacttcgaagcaatcttgtcgtctttgattgtgttcctcatgttgtaggcatagttctcaagc |
23597588 |
T |
|
| Q |
101 |
gcattcttggcctccactttctttttgtgctcctcgtcctcagacttgtacttttcagcttcctgcaccatcttctcaatttcttccttggagagcctac |
200 |
Q |
| |
|
||||| ||||||||||| ||| ||||||||||||| ||||| || ||||||||||| |||||||||||||| |||||||| || |||||||||||||||| |
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|
| T |
23597587 |
gcatttttggcctccaccttccttttgtgctcctcatcctcggatttgtacttttccgcttcctgcaccattttctcaatgtcctccttggagagcctac |
23597488 |
T |
|
| Q |
201 |
ccttgtcattggtgattgtaatcttgtttttctgccctgttgtcttgtcctctgctgagacattcaaaatgccattggcatcaatgtcaaagcagacagt |
300 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
23597487 |
ccttgtcattggtaattgtaatcttgtttttttgcccggttgtcttgtcctctgctgagacattcaaaatgccattggcatcgatgtcaaagcagacagt |
23597388 |
T |
|
| Q |
301 |
gatctgaggaacaccccttggagcaggaggtatacccgacaactcaaacttgcccaacaaatt |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
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|
| T |
23597387 |
gatctgaggaacaccccttggagcaggaggaatacccgacagctcaaacttgcccaacaaatt |
23597325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 336
Target Start/End: Original strand, 54395536 - 54395824
Alignment:
| Q |
48 |
caatcttgtcgtctttgattgtgttcctcatgttgtaggcatagttctcaagtgcattcttggcctccactttctttttgtgctcctcgtcctcagactt |
147 |
Q |
| |
|
||||||| || || || ||||| |||||||| || || ||||| ||||||| || |||||| |||||||||||||| || ||| || ||||| | ||| |
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|
| T |
54395536 |
caatcttctcatccttaattgtattcctcatattataagcataattctcaattgaattcttcgcctccactttcttcttcacctcttcatcctctgcctt |
54395635 |
T |
|
| Q |
148 |
gtacttttcagcttcctgcaccatcttctcaatttcttccttggagagcctacccttgtcattggtgattgtaatcttgtttttctgccctgttgtcttg |
247 |
Q |
| |
|
||||| || || || | |||||||||||| || ||||||||| | ||| ||||| ||||| ||||| || |||||||| ||| || | ||| || |
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|
| T |
54395636 |
atacttctctgcatctttcaccatcttctctatctcttccttgctcaacctccccttatcattcgtgatcgttatcttgttcttcactccagctgtttta |
54395735 |
T |
|
| Q |
248 |
tcctctgctgagacattcaaaatgccattggcatcaatgtcaaagcagacagtgatctgaggaacaccccttggagcaggaggtatacc |
336 |
Q |
| |
|
|| || || || || ||||| || ||||| ||||||||||| || || ||| ||||||| || ||||| |||||||||||||| ||||| |
|
|
| T |
54395736 |
tcttcagcagaaacgttcaatataccattcgcatcaatgtcgaaacaaacattgatctgtggtacacctcttggagcaggaggaatacc |
54395824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 128; Significance: 4e-66; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 48 - 315
Target Start/End: Complemental strand, 8018468 - 8018201
Alignment:
| Q |
48 |
caatcttgtcgtctttgattgtgttcctcatgttgtaggcatagttctcaagtgcattcttggcctccactttctttttgtgctcctcgtcctcagactt |
147 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||| || ||||| || | |||||||| || || || ||||||||||| |||||||| |||| ||| |
|
|
| T |
8018468 |
caatcttctcgtctttaattgtgttcctcatgttgtaagcgtagttttccaaagcattctttgcatcaaccttctttttgtgttcctcgtcttcagcctt |
8018369 |
T |
|
| Q |
148 |
gtacttttcagcttcctgcaccatcttctcaatttcttccttggagagcctacccttgtcattggtgattgtaatcttgtttttctgccctgttgtcttg |
247 |
Q |
| |
|
||| ||||| ||||||| ||||||||||||||||||||||| || | |||||| |||||||||||||| ||||||||||| |||||||| ||||| ||| |
|
|
| T |
8018368 |
gtatttttctgcttcctcaaccatcttctcaatttcttccttagacaacctacctttgtcattggtgatggtaatcttgttcttctgcccagttgttttg |
8018269 |
T |
|
| Q |
248 |
tcctctgctgagacattcaaaatgccattggcatcaatgtcaaagcagacagtgatctgaggaacacc |
315 |
Q |
| |
|
||||| || ||||||||||| || ||||||||||||||||| ||||| || ||||| ||||||||||| |
|
|
| T |
8018268 |
tcctcagcagagacattcaagataccattggcatcaatgtcgaagcaaactgtgatttgaggaacacc |
8018201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 68 - 363
Target Start/End: Original strand, 39984779 - 39985074
Alignment:
| Q |
68 |
gtgttcctcatgttgtaggcatagttctcaagtgcattcttggcctccactttctttttgtgctcctcgtcctcagacttgtacttttcagcttcctgca |
167 |
Q |
| |
|
||||||||||||||||| |||||||| || | ||||||||||||||| || ||||| || ||||| || || || ||||||||||| || || || || | |
|
|
| T |
39984779 |
gtgttcctcatgttgtatgcatagttttccaatgcattcttggcctcgaccttcttcttatgctcttcatcttccgacttgtacttctctgcctcttgaa |
39984878 |
T |
|
| Q |
168 |
ccatcttctcaatttcttccttggagagcctacccttgtcattggtgattgtaatcttgtttttctgccctgttgtcttgtcctctgctgagacattcaa |
267 |
Q |
| |
|
||||||||||||| |||||||| || || |||||||||||||||||||| || || ||||| ||||| || ||||| ||||| ||||| ||||||||||| |
|
|
| T |
39984879 |
ccatcttctcaatgtcttcctttgaaagtctacccttgtcattggtgatggtgattttgttcttctggccagttgttttgtcttctgcagagacattcaa |
39984978 |
T |
|
| Q |
268 |
aatgccattggcatcaatgtcaaagcagacagtgatctgaggaacaccccttggagcaggaggtatacccgacaactcaaacttgcccaacaaatt |
363 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||| || |||||||| || || |||||||| || || || | |||||||||||||||||||| |
|
|
| T |
39984979 |
gataccattggcatcaatgtcaaagcacacagtgatttggggaacacctctgggggcaggaggaatgccggaaagttcaaacttgcccaacaaatt |
39985074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 50 - 360
Target Start/End: Original strand, 8101782 - 8102092
Alignment:
| Q |
50 |
atcttgtcgtctttgattgtgttcctcatgttgtaggcatagttctcaagtgcattcttggcctccactttctttttgtgctcctcgtcctcagacttgt |
149 |
Q |
| |
|
||||| |||||||| || ||||| ||||||||||| ||||||||||| | | ||||| ||||| || ||||| ||||||||||| || ||| ||||| |
|
|
| T |
8101782 |
atcttctcgtctttaatggtgtttctcatgttgtatgcatagttctccaaggagttctttgcctcaaccttcttcttgtgctcctcatcttcactcttgt |
8101881 |
T |
|
| Q |
150 |
acttttcagcttcctgcaccatcttctcaatttcttccttggagagcctacccttgtcattggtgattgtaatcttgtttttctgccctgttgtcttgtc |
249 |
Q |
| |
|
| || || ||||| || ||||||||||| ||||||||||| || | ||| ||||| || |||||||| ||||||||||| |||||||| ||||| ||||| |
|
|
| T |
8101882 |
atttctctgcttcttggaccatcttctcgatttcttcctttgacaaccttcccttatcgttggtgatggtaatcttgttcttctgcccggttgttttgtc |
8101981 |
T |
|
| Q |
250 |
ctctgctgagacattcaaaatgccattggcatcaatgtcaaagcagacagtgatctgaggaacaccccttggagcaggaggtatacccgacaactcaaac |
349 |
Q |
| |
|
||| || ||||||||||| || |||||||||||||| ||||| || |||||||||||||||||||| | || || ||||| || || || | ||||||| |
|
|
| T |
8101982 |
ctcagcagagacattcaagataccattggcatcaatatcaaaacaaacagtgatctgaggaacaccgcggggtgctggaggaattccggaaagctcaaac |
8102081 |
T |
|
| Q |
350 |
ttgcccaacaa |
360 |
Q |
| |
|
|| |||||||| |
|
|
| T |
8102082 |
ttacccaacaa |
8102092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 258 - 330
Target Start/End: Complemental strand, 17648773 - 17648701
Alignment:
| Q |
258 |
agacattcaaaatgccattggcatcaatgtcaaagcagacagtgatctgaggaacaccccttggagcaggagg |
330 |
Q |
| |
|
|||||| ||| || ||||| ||||||||||||||||| ||| ||||||| |||||||| || ||||||||||| |
|
|
| T |
17648773 |
agacatccaatataccattagcatcaatgtcaaagcatacactgatctgtggaacacctctaggagcaggagg |
17648701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 258 - 330
Target Start/End: Complemental strand, 17706520 - 17706448
Alignment:
| Q |
258 |
agacattcaaaatgccattggcatcaatgtcaaagcagacagtgatctgaggaacaccccttggagcaggagg |
330 |
Q |
| |
|
|||||||||| || ||||| | ||||||||||||||| ||| ||||||| |||||||||| ||||||||||| |
|
|
| T |
17706520 |
agacattcaatataccattaggatcaatgtcaaagcatacaatgatctgtggaacaccccaaggagcaggagg |
17706448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 17649277 - 17649198
Alignment:
| Q |
143 |
gacttgtacttttcagcttcctgcaccatcttctcaatttcttccttggagagcctacccttgtcattggtgattgtaat |
222 |
Q |
| |
|
||||||||||| || || || | |||||||||||||| | |||||| || || |||||||||||||||||||| ||||| |
|
|
| T |
17649277 |
gacttgtacttctctgcctctcgaaccatcttctcaatgttttcctttgaaagtctacccttgtcattggtgatggtaat |
17649198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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