View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8421_low_6 (Length: 349)
Name: NF8421_low_6
Description: NF8421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8421_low_6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 15 - 349
Target Start/End: Original strand, 10614981 - 10615315
Alignment:
| Q |
15 |
acatcagactgcaacataaacacaatcaaatgccaagaaccaaatcacatatcaagtgtatacggttaatagccttcgatgcattagaatttatttgctt |
114 |
Q |
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| T |
10614981 |
acatcagactgcaacataaacacaatcaaatgccaagaaccaaatcacatatcaagtgtatacggttaaaagccttcgatgcattagaatttatttgctt |
10615080 |
T |
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| Q |
115 |
gaagttattcaacattacaaaactattacctttgcaagtgcatctctaataaccattggcacaggcatttcaagcaacacattatcattgatagatttgg |
214 |
Q |
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| T |
10615081 |
gaagttattcaacattacaaaactattacctttgcaagtgcatctctaataaccattggcacaggcatttcaagcaacacattatcattgatagatttgg |
10615180 |
T |
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| Q |
215 |
cagccttgaatacttggcgtaccaccttcccctgatgaaccaacctctttctttcggtatcagaaagaccagtttttggtacttgaggtgagggaagcca |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
10615181 |
cagccttgaatacttggcgtaccaccttcccctgatgaaccaacctctttctttcggtatcagaaagcccagtttttggtacttgaggtgagggaagcca |
10615280 |
T |
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| Q |
315 |
ccatcttttactatgccgcacactcatgtctttcc |
349 |
Q |
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| T |
10615281 |
ccatcttttactatgccgcacactcatgtctttcc |
10615315 |
T |
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