View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8421_low_9 (Length: 206)

Name: NF8421_low_9
Description: NF8421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8421_low_9
NF8421_low_9
[»] chr6 (2 HSPs)
chr6 (17-122)||(33968424-33968529)
chr6 (118-190)||(33968173-33968245)
[»] chr1 (6 HSPs)
chr1 (7-122)||(17033745-17033860)
chr1 (27-122)||(38548867-38548963)
chr1 (25-122)||(38544546-38544644)
chr1 (7-103)||(46603539-46603634)
chr1 (25-103)||(49820308-49820387)
chr1 (7-103)||(42374321-42374417)
[»] chr7 (5 HSPs)
chr7 (7-122)||(22567920-22568035)
chr7 (25-89)||(9107335-9107400)
chr7 (24-64)||(12546274-12546314)
chr7 (10-65)||(9427969-9428024)
chr7 (17-103)||(11378958-11379042)
[»] chr5 (4 HSPs)
chr5 (7-122)||(39183994-39184109)
chr5 (26-122)||(8731094-8731190)
chr5 (25-122)||(17853862-17853960)
chr5 (25-70)||(24072128-24072173)
[»] chr4 (1 HSPs)
chr4 (10-121)||(12296335-12296447)
[»] chr2 (8 HSPs)
chr2 (46-122)||(13699094-13699170)
chr2 (15-114)||(43816273-43816372)
chr2 (27-104)||(20572265-20572342)
chr2 (26-122)||(25504717-25504813)
chr2 (14-64)||(27740139-27740189)
chr2 (10-64)||(24308594-24308648)
chr2 (25-122)||(22884942-22885039)
chr2 (25-64)||(33788499-33788538)
[»] chr8 (1 HSPs)
chr8 (10-103)||(15906847-15906941)
[»] scaffold1613 (1 HSPs)
scaffold1613 (25-122)||(825-923)
[»] chr3 (1 HSPs)
chr3 (24-122)||(25594339-25594438)


Alignment Details
Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 33968529 - 33968424
Alignment:
Q  17 aggacaaagtgtttcatttagaggggtgctattttgggatgagtagtgatgatgctggttatggataccgtttctcagtggtcgttttgtaaaagagtat 116  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |    
T  33968529 aggacaaagtgtttcatttagaggggtgttattttgggatgagtagtgatgatgctggttatggataccatttttcagtggtcgttttgtaaaagagtct 33968430  T
Q  117 gtttta 122  Q
    ||||||    
T  33968429 gtttta 33968424  T

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Target: chr6; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 33968245 - 33968173
Alignment:
Q  118 ttttaataaaatttgttgttcaaaaaagcaagttatgtagttcatactcaatcaggataaatatcgttggtcg 190  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||    
T  33968245 ttttaataaaatttgttgttcaaaaaagtaagttatgtagttcatactcaatcagggtaaatatctttggtcg 33968173  T

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Target: chr1 (Bit Score: 68; Significance: 1e-30; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 17033745 - 17033860
Alignment:
Q  7 tttggtgttgaggacaaagtgtttcatttagaggggtgctattttgggatgagtagtgatgatgctggttatggataccgtttctcagtggtcgttttgt 106  Q
    ||||||| ||||||||  |||||||||| ||||||||| ||||||||||| ||||||| |||||||||||||| ||||||||| | ||||||||||| ||    
T  17033745 tttggtgatgaggacatggtgtttcattcagaggggtgttattttgggattagtagtggtgatgctggttatgtataccgtttttaagtggtcgtttcgt 17033844  T
Q  107 aaaagagtatgtttta 122  Q
     |||||||||||||||    
T  17033845 gaaagagtatgtttta 17033860  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 122
Target Start/End: Complemental strand, 38548963 - 38548867
Alignment:
Q  27 gtttcatttagaggggtgctattttgggatgagtagtgatgat-gctggttatggataccgtttctcagtggtcgttttgtaaaagagtatgtttta 122  Q
    |||| ||||||||||||| || ||||||||||||||||| ||| | |||||||| ||| ||||| |||||| |||||| || ||||||| |||||||    
T  38548963 gtttgatttagaggggtgttactttgggatgagtagtgacgatgggtggttatgaatatcgtttttcagtgatcgtttcgtgaaagagtctgtttta 38548867  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 25 - 122
Target Start/End: Complemental strand, 38544644 - 38544546
Alignment:
Q  25 gtgtttcatttagaggggtgctattttgggatgagtagtgatgatg-ctggttatggataccgtttctcagtggtcgttttgtaaaagagtatgtttta 122  Q
    |||||||||||||||||||| ||  |||||||||||||||| ||||  |||||||||||| |||||  ||||| || ||  || ||||||| |||||||    
T  38544644 gtgtttcatttagaggggtgttacgttgggatgagtagtgacgatgagtggttatggatatcgttttccagtgatcattccgtgaaagagtctgtttta 38544546  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 103
Target Start/End: Original strand, 46603539 - 46603634
Alignment:
Q  7 tttggtgttgaggacaaagtgtttcatttagaggggtgctattttgggatgagtagtgatgatgctggttatggataccgtttctcagtggtcgttt 103  Q
    ||||||| | |||||| | ||||| ||||||||||||| |||||||||| ||||||||  |||| || ||||||||| ||| |  ||||||||||||    
T  46603539 tttggtgataaggacataatgttt-atttagaggggtgttattttgggaagagtagtggcgatgttgattatggataacgtgttccagtggtcgttt 46603634  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 103
Target Start/End: Original strand, 49820308 - 49820387
Alignment:
Q  25 gtgtttcatttagaggggtgctattttgggatgagtagtgatga-tgctggttatggataccgtttctcagtggtcgttt 103  Q
    |||||||||||||||||||| |||||||||||| || |||  ||  | |||||||||||| ||||| |||||| ||||||    
T  49820308 gtgtttcatttagaggggtgatattttgggatgtgtggtggcgacgggtggttatggatatcgtttttcagtgctcgttt 49820387  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 103
Target Start/End: Original strand, 42374321 - 42374417
Alignment:
Q  7 tttggtgttgaggacaaagtgtttcatttagaggggtgctattttgggatgagtagtgatgatgctggttatggataccgtttctcagtggtcgttt 103  Q
    ||||||| ||||||| | | ||| | |||| ||||||| ||| ||||| | ||||||| |||   ||||||||||||| |||| |||||||||||||    
T  42374321 tttggtgatgaggacgaggagttgcttttataggggtgttatcttgggttcagtagtggtgacattggttatggatacagtttttcagtggtcgttt 42374417  T

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Target: chr7 (Bit Score: 60; Significance: 9e-26; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 7 - 122
Target Start/End: Complemental strand, 22568035 - 22567920
Alignment:
Q  7 tttggtgttgaggacaaagtgtttcatttagaggggtgctattttgggatgagtagtgatgatgctggttatggataccgtttctcagtggtcgttttgt 106  Q
    |||||||  |||||||  |||||||||||  ||||||| |||||| |||||||||||| |||||||||||||||||||||||| |||||||| |||| ||    
T  22568035 tttggtgacgaggacatggtgtttcattttaaggggtgttatttttggatgagtagtggtgatgctggttatggataccgtttttcagtggttgtttcgt 22567936  T
Q  107 aaaagagtatgtttta 122  Q
     ||||||| |||||||    
T  22567935 gaaagagtctgtttta 22567920  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 9107335 - 9107400
Alignment:
Q  25 gtgtttcatttagaggggtgctattttgggatgagtagtgatgat-gctggttatggataccgttt 89  Q
    |||||||||||||||||| | |||||||||||||||||||  ||| | |||||||||||| |||||    
T  9107335 gtgtttcatttagaggggagttattttgggatgagtagtggcgatgggtggttatggatatcgttt 9107400  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 12546314 - 12546274
Alignment:
Q  24 agtgtttcatttagaggggtgctattttgggatgagtagtg 64  Q
    ||||||||||||||||||||| ||||||||||| |||||||    
T  12546314 agtgtttcatttagaggggtgttattttgggataagtagtg 12546274  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 9428024 - 9427969
Alignment:
Q  10 ggtgttgaggacaaagtgtttcatttagaggggtgctattttgggatgagtagtga 65  Q
    |||||||||| | | || |||||||||||||| |||||||| ||||||||||||||    
T  9428024 ggtgttgaggtcgatgtatttcatttagagggatgctatttagggatgagtagtga 9427969  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 11379042 - 11378958
Alignment:
Q  17 aggacaaagtgtttcatttagaggggtgctattttgggatgagtagtgatgatgctggttatggataccgtttctcagtggtcgttt 103  Q
    ||||||| |||||||||||||||||||  | ||| |||| ||||||||  ||| |||||| ||||||| |||| |||||||| ||||    
T  11379042 aggacaaggtgtttcatttagaggggt--tttttcgggaggagtagtggcgatactggttttggatactgtttttcagtggttgttt 11378958  T

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Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 7 - 122
Target Start/End: Complemental strand, 39184109 - 39183994
Alignment:
Q  7 tttggtgttgaggacaaagtgtttcatttagaggggtgctattttgggatgagtagtgatgatgctggttatggataccgtttctcagtggtcgttttgt 106  Q
    ||||||||||||||||  ||| ||| || ||||||||| ||||||||||| |||||||  |||| |||||||||||||||||| ||||||||||||| ||    
T  39184109 tttggtgttgaggacatggtgattcgttaagaggggtgttattttgggataagtagtggcgatgttggttatggataccgtttttcagtggtcgtttcgt 39184010  T
Q  107 aaaagagtatgtttta 122  Q
     | ||||| |||||||    
T  39184009 gatagagtctgtttta 39183994  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 8731094 - 8731190
Alignment:
Q  26 tgtttcatttagaggggtgctattttgggatgagtagtgatgatgctggttatggataccgtttctcagtggtcgttttgtaaaagagtatgtttta 122  Q
    ||||||||||||||||||| |||||||||||||||||||    |  || |||| |||||||||| ||||||||||||| || ||||| | |||||||    
T  8731094 tgtttcatttagaggggtgttattttgggatgagtagtggcttttttgtttattgataccgtttttcagtggtcgtttcgtgaaagactctgtttta 8731190  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 122
Target Start/End: Complemental strand, 17853960 - 17853862
Alignment:
Q  25 gtgtttcatttagaggggtgcta-ttttgggatgagtagtgatgatgc-tggttatggataccgtttctcagtggtcgttttgtaaaagagtatgtttta 122  Q
    |||||||||||||||| || ||| ||||||| ||||||||| |||||  |||||||||||| ||||| |||||| |||||| ||||| |||| |||||||    
T  17853960 gtgtttcatttagaggtgt-ctacttttggggtgagtagtggtgatgggtggttatggatatcgtttttcagtgatcgtttcgtaaaggagtctgtttta 17853862  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 24072173 - 24072128
Alignment:
Q  25 gtgtttcatttagaggggtgctattttgggatgagtagtgatgatg 70  Q
    ||||||||||||||||  || |||||||||||||||||||| ||||    
T  24072173 gtgtttcatttagaggaatgttattttgggatgagtagtgacgatg 24072128  T

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Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 10 - 121
Target Start/End: Original strand, 12296335 - 12296447
Alignment:
Q  10 ggtgttgaggacaaagtgtttcatttagaggggtgctattttgggatgagtagtgatgat-gctggttatggataccgtttctcagtggtcgttttgtaa 108  Q
    |||| |||||||  ||||||||||||||||||||| |||||||||||||||||||  ||| | |||||||||||| ||||| |||||||||| || | ||    
T  12296335 ggtgatgaggacggagtgtttcatttagaggggtgttattttgggatgagtagtggcgatgggtggttatggatatcgtttttcagtggtcgcttcggaa 12296434  T
Q  109 aagagtatgtttt 121  Q
    | |||| ||||||    
T  12296435 aggagtctgtttt 12296447  T

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Target: chr2 (Bit Score: 49; Significance: 3e-19; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 13699170 - 13699094
Alignment:
Q  46 tattttgggatgagtagtgatgatgctggttatggataccgtttctcagtggtcgttttgtaaaagagtatgtttta 122  Q
    |||||||||||||||||||  | ||||||||||| ||||||||| ||||||||||||| |||||||||| |||||||    
T  13699170 tattttgggatgagtagtggcgttgctggttatgtataccgtttttcagtggtcgtttcgtaaaagagtgtgtttta 13699094  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 15 - 114
Target Start/End: Complemental strand, 43816372 - 43816273
Alignment:
Q  15 tgaggacaaagtgtttcatttagaggggtgctattttgggatgagtagtgatgatgctggttatggataccgtttctcagtggtcgttttgtaaaagagt 114  Q
    ||||||||| |||||||||||||||| ||| | ||| |||| ||||||||  |||||||  |||||||||||||| |||||||| |||| || |||||||    
T  43816372 tgaggacaaggtgtttcatttagaggagtgttttttcgggaggagtagtggcgatgctgtgtatggataccgtttttcagtggttgtttcgtgaaagagt 43816273  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 20572265 - 20572342
Alignment:
Q  27 gtttcatttagaggggtgctattttgggatgagtagtgatgatgctggttatggataccgtttctcagtggtcgtttt 104  Q
    |||||||||||||||||| | ||||| | |||||||||  |||| |||||||||||| ||||| ||||||||||||||    
T  20572265 gtttcatttagaggggtgttcttttgaggtgagtagtggcgatggtggttatggatatcgtttttcagtggtcgtttt 20572342  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 25504813 - 25504717
Alignment:
Q  26 tgtttcatttagaggggtgctattttgggatgagtagtgatgatgctggttatggataccgtttctcagtggtcgttttgtaaaagagtatgtttta 122  Q
    ||||||||||||||||||| |||||||||||||||||||    |  || |||| |||||||||| ||||||||||||| || ||||| | |||||||    
T  25504813 tgtttcatttagaggggtgttattttgggatgagtagtggcttttttgtttattgataccgtttttcagtggtcgtttcgtgaaagactctgtttta 25504717  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 27740139 - 27740189
Alignment:
Q  14 ttgaggacaaagtgtttcatttagaggggtgctattttgggatgagtagtg 64  Q
    |||||||||| |||||||||||||||||||| |||| ||||||||||||||    
T  27740139 ttgaggacaatgtgtttcatttagaggggtgttattctgggatgagtagtg 27740189  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 24308648 - 24308594
Alignment:
Q  10 ggtgttgaggacaaagtgtttcatttagaggggtgctattttgggatgagtagtg 64  Q
    |||| ||||||  |||||||| ||||||||||||| |||||||||||||||||||    
T  24308648 ggtgatgaggatgaagtgttttatttagaggggtgttattttgggatgagtagtg 24308594  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 122
Target Start/End: Complemental strand, 22885039 - 22884942
Alignment:
Q  25 gtgtttcatttagaggggtgctattttgggatgagtagtgatgatgctggttatggataccgtttctcagtggtcgttttgtaaaagagtatgtttta 122  Q
    |||||||||||||||||||| ||||||||||  || ||||  || |  ||||||||||  ||||| ||||||||||||| || || |||| |||||||    
T  22885039 gtgtttcatttagaggggtgttattttgggacaagcagtggcgacgggggttatggatttcgtttgtcagtggtcgtttcgtgaaggagtctgtttta 22884942  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 33788538 - 33788499
Alignment:
Q  25 gtgtttcatttagaggggtgctattttgggatgagtagtg 64  Q
    |||||||||||||||||||| |||||||||| ||||||||    
T  33788538 gtgtttcatttagaggggtgttattttgggacgagtagtg 33788499  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 103
Target Start/End: Original strand, 15906847 - 15906941
Alignment:
Q  10 ggtgttgaggacaaagtgtttcatttagaggggtgctattttgggatgagtagtg--atgatgctggttatggataccgtttctcagtggtcgttt 103  Q
    |||| ||||||||  |||||| |||||||| |||| |||||||||||||||||||  |  ||| ||||||||||||| |||| |||||||||||||    
T  15906847 ggtgatgaggacagtgtgttttatttagagaggtgttattttgggatgagtagtggcaacatg-tggttatggatactgtttttcagtggtcgttt 15906941  T

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Target: scaffold1613 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 25 - 122
Target Start/End: Complemental strand, 923 - 825
Alignment:
Q  25 gtgtttcatttagaggggtgctattttgggatgagtagtgatgatg-ctggttatggataccgtttctcagtggtcgttttgtaaaagagtatgtttta 122  Q
    |||||||||||||||||||| ||  |||||||||||||||| ||||  |||||||||||| |||||  ||||| || ||  || ||||||| |||||||    
T  923 gtgtttcatttagaggggtgttacgttgggatgagtagtgacgatgagtggttatggatatcgttttccagtgatcattccgtgaaagagtctgtttta 825  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 122
Target Start/End: Complemental strand, 25594438 - 25594339
Alignment:
Q  24 agtgtttcatttagaggggtgctattttgggatgagtagtgatgat-gctggttatggataccg-tttctcagtggtcgttttgtaaaagagtatgtttt 121  Q
    |||||| |||||||||| ||| ||| |||||||||||||||  ||| | ||||| |||||| || ||| |||||||||||||||| || |||||||||||    
T  25594438 agtgttccatttagaggagtgttatcttgggatgagtagtggcgatgggtggtt-tggatatcgttttttcagtggtcgttttgtgaaggagtatgtttt 25594340  T

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