View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8422_high_1 (Length: 342)
Name: NF8422_high_1
Description: NF8422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8422_high_1 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 85 - 342
Target Start/End: Complemental strand, 50465967 - 50465707
Alignment:
| Q |
85 |
tcaacaaattgaaattcatcaacttaatttaaagtcaactcgattcattccaacaaaagtaagcacaagggccttatcgagagaattggtcaactttggg |
184 |
Q |
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| T |
50465967 |
tcaagaaattgaaattcatcaacttaatttaaagtcaactcgattcattccaacaaaagtaagcacaagggccttatcgagaggattggtcaactttggg |
50465868 |
T |
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| Q |
185 |
aaatggatatattgatgatcataaattgagaaacaatgcatacgtataatttatttat---aagtaatttataaagcactatgctgcaacaaagtggggg |
281 |
Q |
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| T |
50465867 |
aaatggatatattgatgatcataaattgagaaacaatgcatacgtataatttatttattactagtaatttataaagcactatgctgcaacaaagtggggg |
50465768 |
T |
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| Q |
282 |
aatttctattttattagtggccaacagacattcatgtacatcgatcacagaatgtaatgca |
342 |
Q |
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| T |
50465767 |
aatttctattttattagtggccaacaaacattcatgtacatcgatcacagaatgtaatgca |
50465707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 50466092 - 50466041
Alignment:
| Q |
1 |
ccacaacccaaatttgtgtgcattttgcacataaaattagaactactaaacc |
52 |
Q |
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| T |
50466092 |
ccacaacccaaatttgtgtgcattttgcacataaaattagaactactaaacc |
50466041 |
T |
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