View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8422_low_2 (Length: 326)
Name: NF8422_low_2
Description: NF8422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8422_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 41 - 309
Target Start/End: Complemental strand, 45882731 - 45882452
Alignment:
| Q |
41 |
ctcctaactttcgctcttccagaaaaaacacaacacccctcaaaaagattaaaattctcccaatctaaccctc--aaaatcttatattaaaccctcggta |
138 |
Q |
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| T |
45882731 |
ctcctaactttcgctcttccagaaaaaacacaacacccctcaaaaagattaaaattctcccaatctaactctctaaaaatcttatattaaaccctcggta |
45882632 |
T |
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| Q |
139 |
gaactacacccagaaaatgggaggttgccattttaa---------acaaacaatggagtgacaaaggtggaatatatacaaagagaaagagaattaactg |
229 |
Q |
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| T |
45882631 |
gaactacacccagaaaatgggaggttgccattttaatagttttatacaaacaatggagtgacaaaggtggaatatatacaaagagaaagagaattgactg |
45882532 |
T |
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| Q |
230 |
aataactgaagtttgtttgacttgagattcttctgcttcgacagctagactgtgaactgtgaacacttatggcaacttct |
309 |
Q |
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| T |
45882531 |
aataactgaagtttgtttgacttgagattcttctgcttcgacagctagattgtgaaatgtgaacatttatggcaacttct |
45882452 |
T |
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