View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8423_high_1 (Length: 760)

Name: NF8423_high_1
Description: NF8423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8423_high_1
NF8423_high_1
[»] chr1 (3 HSPs)
chr1 (15-741)||(41940838-41941572)
chr1 (454-535)||(30848891-30848972)
chr1 (454-517)||(42517104-42517167)
[»] chr6 (3 HSPs)
chr6 (459-534)||(9627260-9627333)
chr6 (459-517)||(1415476-1415534)
chr6 (454-535)||(10384057-10384138)
[»] chr2 (2 HSPs)
chr2 (459-536)||(38288569-38288648)
chr2 (461-514)||(31395288-31395341)
[»] chr5 (1 HSPs)
chr5 (454-530)||(19276879-19276958)
[»] scaffold0035 (1 HSPs)
scaffold0035 (342-378)||(24532-24568)
[»] chr3 (5 HSPs)
chr3 (486-522)||(8540980-8541016)
chr3 (486-522)||(8543031-8543067)
chr3 (414-517)||(35223400-35223507)
chr3 (460-520)||(17118333-17118396)
chr3 (475-524)||(29794681-29794730)
[»] scaffold0154 (1 HSPs)
scaffold0154 (454-500)||(19338-19384)
[»] chr4 (1 HSPs)
chr4 (454-523)||(3284223-3284295)
[»] chr8 (1 HSPs)
chr8 (455-535)||(4490279-4490362)


Alignment Details
Target: chr1 (Bit Score: 633; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 15 - 741
Target Start/End: Complemental strand, 41941572 - 41940838
Alignment:
Q  15 cagagaccctgactgaaaatgtttcatataggaactgtttgtagttgttctgaaaaggcaaaagaataccatttgagtgaaacaccaaaagcagcagcat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41941572 cagagaccctgactgaaaatgtttcatataggaactgtttgtagttgttctgaaaaggcaaaagaataccatttgagtgaaacaccaaaagcagcagcat 41941473  T
Q  115 gtatcagtggtccatctttactctcactgacactaacacttcatctaagcgttacaagtgcttgtctaaactcagaatcatattccagacagttaaatct 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  41941472 gtatcagtggtccatctttactctcactgacactaacacttcatctaagcgttacaagtgcttgtctaaactcagaatcatattccagacagtaaaatct 41941373  T
Q  215 ctctcattctatgcacacatacacatgcactatcactctccatattgcgacctagcaaatgcatactcttatctgtcgctgaatacacttcacgcacgag 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41941372 ctctcattctatgcacacatacacatgcactatcactctccatattgcgacctagcaaatgcatactcttatctgtcgctgaatacacttcacgcacgag 41941273  T
Q  315 ccataactaatgttaaaacaacgactagtaacagaagattaaataagagaacaaaaataaaagataataatgaacacagttcggccaatttgtgactaac 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||| |||||| |||||| | |    
T  41941272 ccataactaatgttaaaacaacgactagtaacagaagattaaataagagaacaaaaataaaaga---taatgaacacagttcagccaatctgtgacgacc 41941176  T
Q  415 tctgcgacaatagagtagctatagctctgtttatgttgcgtgatgaattagggtttcaatgttacaagtaatatata---tactactactacgattcagt 511  Q
    |||||||||||||||||||||||| ||| ||||||||  ||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  41941175 tctgcgacaatagagtagctatagttctatttatgttatgtgatgaattagggtttcaatgttacaagtaatatatatactactactactacgattcagt 41941076  T
Q  512 ttacaatattacccctaaaccgtatactcatgccttct--------ttgtatatatgagttatacttcaacgactaccttcgttaagttactctctctaa 603  Q
    ||||||||||||||||||||||||||||||||||||||        |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  41941075 ttacaatattacccctaaaccgtatactcatgccttctttaatgtcttgtatatatgagtcatacttcaacgactaccttcgttaagttactctctctaa 41940976  T
Q  604 gtttaaaccacatgaaagcttataaatgcaatatggttcctctacttattgtacatctattttatatgaaacatgattttggtctctttatttaaatctt 703  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  41940975 gtttaaaccacatgaaagcttataaatgcaatatggttcatctacttattgtacatctattttatatgagacatgattttggtctctttatttaaatctt 41940876  T
Q  704 agatgttgatgttccaatttcacaagttttagtagttt 741  Q
    ||||||||||||||||||||||||||||||||||||||    
T  41940875 agatgttgatgttccaatttcacaagttttagtagttt 41940838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 454 - 535
Target Start/End: Complemental strand, 30848972 - 30848891
Alignment:
Q  454 gtgatgaattagggtttcaatgttacaagtaatatatatactactactacgattcagtttacaatattacccctaaaccgta 535  Q
    ||||||||||||||||| | || |||||  |||||||||| ||| ||||| ||||||||||||||||||||| | |||||||    
T  30848972 gtgatgaattagggtttaagtggtacaaacaatatatatagtaccactacaattcagtttacaatattacccttgaaccgta 30848891  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 454 - 517
Target Start/End: Complemental strand, 42517167 - 42517104
Alignment:
Q  454 gtgatgaattagggtttcaatgttacaagtaatatatatactactactacgattcagtttacaa 517  Q
    ||||||||||||||||||  ||||||||  |||||||||| ||||||||||||| || ||||||    
T  42517167 gtgatgaattagggtttcggtgttacaaacaatatatatagtactactacgatttagattacaa 42517104  T

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Target: chr6 (Bit Score: 53; Significance: 5e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 459 - 534
Target Start/End: Original strand, 9627260 - 9627333
Alignment:
Q  459 gaattagggtttcaatgttacaagtaatatatatactactactacgattcagtttacaatattacccctaaaccgt 534  Q
    |||||||||||||| ||||||||| ||||||||   ||||||||||||||||||||||||||||||||||||||||    
T  9627260 gaattagggtttcagtgttacaagcaatatatag--tactactacgattcagtttacaatattacccctaaaccgt 9627333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 459 - 517
Target Start/End: Complemental strand, 1415534 - 1415476
Alignment:
Q  459 gaattagggtttcaatgttacaagtaatatatatactactactacgattcagtttacaa 517  Q
    |||||||||||||||||||||||||  |||||||| |||||||| ||||||||||||||    
T  1415534 gaattagggtttcaatgttacaagttgtatatatagtactactatgattcagtttacaa 1415476  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 454 - 535
Target Start/End: Original strand, 10384057 - 10384138
Alignment:
Q  454 gtgatgaattagggtttcaatgttacaagtaatatatatactactactacgattcagtttacaatattacccctaaaccgta 535  Q
    ||||| ||||||||||| | | ||| ||||||||||||||  ||||||||||||||||||| |||||||||| | |||||||    
T  10384057 gtgataaattagggttttagtattataagtaatatatatagaactactacgattcagtttataatattacccatgaaccgta 10384138  T

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Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 459 - 536
Target Start/End: Original strand, 38288569 - 38288648
Alignment:
Q  459 gaattagggtttcaatgttacaagtaatatatatac--tactactacgattcagtttacaatattacccctaaaccgtat 536  Q
    |||||||||||||||||||| ||| ||||||||||   ||||||||||||||  ||||||||||||||||||||||||||    
T  38288569 gaattagggtttcaatgttataagcaatatatatataatactactacgattctctttacaatattacccctaaaccgtat 38288648  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 461 - 514
Target Start/End: Original strand, 31395288 - 31395341
Alignment:
Q  461 attagggtttcaatgttacaagtaatatatatactactactacgattcagttta 514  Q
    |||||||||||| ||||||||| |||||||||| ||||||||||||||| ||||    
T  31395288 attagggtttcagtgttacaagcaatatatatagtactactacgattcaattta 31395341  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 454 - 530
Target Start/End: Complemental strand, 19276958 - 19276879
Alignment:
Q  454 gtgatgaattagggtttcaatgttacaagtaatatatatactac---tactacgattcagtttacaatattacccctaaa 530  Q
    ||||||| |||||||||||||||||| || |||||||||| |||   ||||||||||||| |||||||||||||| ||||    
T  19276958 gtgatgatttagggtttcaatgttactagcaatatatatagtacaattactacgattcagattacaatattacccttaaa 19276879  T

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Target: scaffold0035 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 342 - 378
Target Start/End: Complemental strand, 24568 - 24532
Alignment:
Q  342 gtaacagaagattaaataagagaacaaaaataaaaga 378  Q
    ||||||||||||||||||||||||||||| |||||||    
T  24568 gtaacagaagattaaataagagaacaaaagtaaaaga 24532  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 486 - 522
Target Start/End: Complemental strand, 8541016 - 8540980
Alignment:
Q  486 tatatatactactactacgattcagtttacaatatta 522  Q
    |||||||| ||||||||||||||||||||||||||||    
T  8541016 tatatatagtactactacgattcagtttacaatatta 8540980  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 486 - 522
Target Start/End: Complemental strand, 8543067 - 8543031
Alignment:
Q  486 tatatatactactactacgattcagtttacaatatta 522  Q
    |||||||| ||||||||||||||||||||||||||||    
T  8543067 tatatatagtactactacgattcagtttacaatatta 8543031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 414 - 517
Target Start/End: Original strand, 35223400 - 35223507
Alignment:
Q  414 ctctgcgacaatagagtagctatagctctgtttatgttgc-gtgatgaa--ttagggtttcaatgttacaagtaatatata-tactactactacgattca 509  Q
    ||||||||| |||||| |||||||| || |||||| || | | ||||||  |||||||||||| |||| ||| |||||||| ||||||| ||||||||||    
T  35223400 ctctgcgactatagagcagctatagttccgtttatatttctgcgatgaaaattagggtttcaaagttataagcaatatatattactactgctacgattca 35223499  T
Q  510 gtttacaa 517  Q
    | ||||||    
T  35223500 gattacaa 35223507  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 460 - 520
Target Start/End: Original strand, 17118333 - 17118396
Alignment:
Q  460 aattagggtttcaatgttacaagtaatatatat---actactactacgattcagtttacaatat 520  Q
    ||||||||||||| ||||||| | |||||||||   |||| |||||| ||||||||||||||||    
T  17118333 aattagggtttcagtgttacaggcaatatatatagcactattactacaattcagtttacaatat 17118396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 475 - 524
Target Start/End: Original strand, 29794681 - 29794730
Alignment:
Q  475 gttacaagtaatatatatactactactacgattcagtttacaatattacc 524  Q
    |||||||| ||||||||   ||||||||||||| ||||||||||||||||    
T  29794681 gttacaagcaatatatagtatactactacgatttagtttacaatattacc 29794730  T

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Target: scaffold0154 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 454 - 500
Target Start/End: Complemental strand, 19384 - 19338
Alignment:
Q  454 gtgatgaattagggtttcaatgttacaagtaatatatatactactac 500  Q
    ||||||||||||||||||| ||||||||  |||||||||| ||||||    
T  19384 gtgatgaattagggtttcactgttacaaacaatatatatagtactac 19338  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 454 - 523
Target Start/End: Original strand, 3284223 - 3284295
Alignment:
Q  454 gtgatgaattagggtttcaatgttacaagtaatatata---tactactactacgattcagtttacaatattac 523  Q
    ||||||||||||||||| |  |||||||| || |||||   |||||||||||| ||| |||||||||||||||    
T  3284223 gtgatgaattagggttttagcgttacaagcaaaatatatattactactactacaattaagtttacaatattac 3284295  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 455 - 535
Target Start/End: Complemental strand, 4490362 - 4490279
Alignment:
Q  455 tgatgaattagggtttcaatgttacaagtaatatatatactactac---tacgattcagtttacaatattacccctaaaccgta 535  Q
    |||||||||| ||||||| |||| || | |||||||||| || |||   || |||||||||||||||| || ||||||||||||    
T  4490362 tgatgaattaaggtttcagtgttgcatgcaatatatatagtaatacaattatgattcagtttacaataatatccctaaaccgta 4490279  T

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