View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8423_high_6 (Length: 338)
Name: NF8423_high_6
Description: NF8423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8423_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 18 - 320
Target Start/End: Original strand, 3426057 - 3426359
Alignment:
| Q |
18 |
acacgtgcatgtaacaaagtggtagaaattttcaatcttcaagctctatcttgatatttctgattttgacaattcctttcccataccttggaaccaaagt |
117 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3426057 |
acacgtgcatataacaaagtggtagaaattttcaatcttcaagctctatcttgatatttctgattttgacaattcctttcccataccttggtaccaaagt |
3426156 |
T |
|
| Q |
118 |
aaccacaacgctatcatcatcctcagctcccaaatcttccaacaaatccgttaatccaacccttaaacaactattagtcttcttctttttgtgatcatgg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3426157 |
aaccacaacgctatcatcatcctcagctcccaaatcttccaacaaatccgttaatccaacccttaaacaactattagtcttcttctttttgtgatcatgg |
3426256 |
T |
|
| Q |
218 |
gaagaatgaggtacattcacaaagcttccagcaaactccgtattaactggcttaatcaccttatcatcttcatcattaatgaaaacatcaaacttaacac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3426257 |
gaagaatgaggtacattcacaaagcttccagcaaactccgtattaactggcttaatcaccttatcatcttcatcattaatgaaaacatcaaacttaacac |
3426356 |
T |
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| Q |
318 |
cta |
320 |
Q |
| |
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||| |
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| T |
3426357 |
cta |
3426359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 34 - 317
Target Start/End: Original strand, 3432246 - 3432526
Alignment:
| Q |
34 |
aagtggtagaaattttcaatcttcaagctctatcttgatatttctgattttgacaattcctttcccataccttggaaccaaagtaaccacaacgctatca |
133 |
Q |
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||||||| |||||||||| |||||||||||||| | || ||||||||||| |||| ||||||||| |||||||||||||||||||||||||| || ||| |
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| T |
3432246 |
aagtggttcaaattttcaaccttcaagctctatcataatgtttctgattttaacaagtcctttcccgtaccttggaaccaaagtaaccacaacactgtca |
3432345 |
T |
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| Q |
134 |
tcatcctcagctcccaaatcttccaacaaatccgttaatccaacccttaaacaactattagtcttcttctttttgtgatcatgggaagaatgaggtacat |
233 |
Q |
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||||| ||| ||||||||||||||| ||| ||||||||||||| || ||| ||||||| | |||||| || | || ||||| ||||||||||||||| |
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| T |
3432346 |
tcatcatcaactcccaaatcttccagcaagtccgttaatccaaatctacaactactattaatattcttcattgtttgttcatgcaaagaatgaggtacat |
3432445 |
T |
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| Q |
234 |
tcacaaagcttccagcaaactccgtattaactggcttaatcaccttatcatcttcatcattaatgaaaacatcaaacttaacac |
317 |
Q |
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|||||||||| ||||||||||| ||||||| |||||||| |||||| ||||| ||||||||| || ||||||||||| |||| |
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| T |
3432446 |
tcacaaagctcccagcaaactctgtattaaatggcttaaccacctt---atctttatcattaataaacacatcaaactttacac |
3432526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 34 - 320
Target Start/End: Complemental strand, 11898221 - 11897935
Alignment:
| Q |
34 |
aagtggtagaaattttcaatcttcaagctctatcttgatatttctgattttgacaattcctttcccataccttggaaccaaagtaaccacaacgctatca |
133 |
Q |
| |
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||||||| |||||||||| |||||||||||||||| || ||| ||||||| |||| |||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
11898221 |
aagtggtccaaattttcaaccttcaagctctatcttaatgtttgtgattttaacaagtcctttcctgtaccttggaaccaaagtaaccacaatgctatca |
11898122 |
T |
|
| Q |
134 |
tcatcctcagctcccaaatcttccaacaaatccgttaatccaacccttaaacaactattagtcttcttctttttgtgatcatgggaagaatgaggtacat |
233 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11898121 |
tcatcctcagctcccaaatctttcaacaaatccgttaatccaacccttaaacagctattagtcttcttctttttgtgatcatgggaagaatgaggtacat |
11898022 |
T |
|
| Q |
234 |
tcacaaagcttccagcaaactccgtattaactggcttaatcaccttatcatcttcatcattaatgaaaacatcaaacttaacaccta |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11898021 |
tcacaaagcttccagcaaactccgtattaactggcttaatctccttagcatcttcatcattaatgaaaacatcaaacttaacaccta |
11897935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 78 - 176
Target Start/End: Complemental strand, 11913220 - 11913122
Alignment:
| Q |
78 |
tgattttgacaattcctttcccataccttggaaccaaagtaaccacaacgctatcatcatcctcagctcccaaatcttccaacaaatccgttaatccaa |
176 |
Q |
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||||||| |||| ||||||||| |||| ||||||||||||||||||||| || |||||||| ||||||||||||||||||| ||| ||||||||||||| |
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| T |
11913220 |
tgattttaacaagtcctttcccttaccatggaaccaaagtaaccacaacactgtcatcatcgtcagctcccaaatcttccagcaagtccgttaatccaa |
11913122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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