View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8423_low_12 (Length: 243)
Name: NF8423_low_12
Description: NF8423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8423_low_12 |
 | |
|
| [»] scaffold0095 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0095 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: scaffold0095
Description:
Target: scaffold0095; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 4 - 226
Target Start/End: Original strand, 27923 - 28144
Alignment:
| Q |
4 |
ttgttaaaatagatctttataaaataaaataataggtctattatacatctcttattaacnnnnnnnnatgttcatctaatttcttgtatgttaccttctc |
103 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
27923 |
ttgttaaaatagacctttataaaataaaataataggtctattatgcatctcttattaacttttttt-atgttcatctaatttcttgtatgttaccttctc |
28021 |
T |
|
| Q |
104 |
taacgtgtttttgatttgtaccccaaattgaactttaatgcactagaatatagcatgtttttcgattcaagtcatgctgacatgttgttcttcttcacat |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
28022 |
taacgtgtttttgatttgtaccccaaattgaactttaatgcactagaatatagcatgtttttcgattcaaatcatgctgacatgttgttcttcttcacat |
28121 |
T |
|
| Q |
204 |
aagcaagctttgctcgactgtgt |
226 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
28122 |
aagcaagctttgctcgactgtgt |
28144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 4 - 226
Target Start/End: Original strand, 39403965 - 39404186
Alignment:
| Q |
4 |
ttgttaaaatagatctttataaaataaaataataggtctattatacatctcttattaacnnnnnnnnatgttcatctaatttcttgtatgttaccttctc |
103 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
39403965 |
ttgttaaaatagacctttataaaataaaataataggtctattatgcatctcttattaacttttttt-atgttcatctaatttcttgtatgttaccttctc |
39404063 |
T |
|
| Q |
104 |
taacgtgtttttgatttgtaccccaaattgaactttaatgcactagaatatagcatgtttttcgattcaagtcatgctgacatgttgttcttcttcacat |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
39404064 |
taacgtgtttttgatttgtaccccaaattgaactttaatgcactagaatatagcatgtttttcgattcaaatcatgctgacatgttgttcttcttcacat |
39404163 |
T |
|
| Q |
204 |
aagcaagctttgctcgactgtgt |
226 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
39404164 |
aagcaagctttgctcgactgtgt |
39404186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University