View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8423_low_13 (Length: 226)
Name: NF8423_low_13
Description: NF8423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8423_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 40659962 - 40660096
Alignment:
| Q |
1 |
caaacaacaa-gaagcacatcatggaacatttggcttgcacactactatcaagctgatacccaattcctacatgccctgtaaaccataggctccaaacag |
99 |
Q |
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| T |
40659962 |
caaacaacaaagaagcacatcatggaacatttggcttgcacactactatcaagctgatacccaattcctacatgccctgtaaaccataggctccaaacag |
40660061 |
T |
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| Q |
100 |
gacaacaaccaagttcaaccttcacaaagcatgac |
134 |
Q |
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| T |
40660062 |
gacaacaaccaagttcaaccttcacaaagcatgac |
40660096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 40660127 - 40660175
Alignment:
| Q |
164 |
tctgcaccactagccacacaccaccttttaaatcctgcagcagtgatgt |
212 |
Q |
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| T |
40660127 |
tctgcaccactagccacacaccaccttttaaatcctgcagcagtgatgt |
40660175 |
T |
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