View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8423_low_3 (Length: 542)
Name: NF8423_low_3
Description: NF8423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8423_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 15 - 528
Target Start/End: Original strand, 37072111 - 37072624
Alignment:
| Q |
15 |
tactccactaactacttggttttcgacctgcagagtttgagtggacctgtgtcagctaccctttaccttggctattcactactcatggcaattgcaatca |
114 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37072111 |
tactccattaactacttggttttcgacctgcagagtttgagtggacctgtgtcagctaccctttaccttggctattcactactcatggcaattgcaatca |
37072210 |
T |
|
| Q |
115 |
tgttgtcaactggcaccattggcttccttatgtcattctactttgtgcactacttgttctcatcagtgaagatagactgaggttctggctgtatctctta |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37072211 |
tgttgtcaactggcaccattggcttccttatgtcattctactttgtgcactacttgttctcatcagtgaagatagactgaggttctggctgtatctctta |
37072310 |
T |
|
| Q |
215 |
ttacccatgtaaaagatcaatcaattgatataacttctaccgagttctttttgtagcttgattgcattgcagaatagtgtggaggctgatgctttagtga |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37072311 |
ttacccatgtaaaagatcaatcaattgatataacttctaccgagttctttttgtagcttgattgcattgcagaatagggtggaggctgatgctttagtga |
37072410 |
T |
|
| Q |
315 |
ttgccttaaacaatcatcaatcaattttataatgcaatgcggtctgcagttcgtctttgaacatagtcattcaaggactagtgtttgagctcatcatgtt |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37072411 |
ttgccttaaacaatcatcaatcaattttataatgcaatgcggtctgcagttcgtctctgaacatagtcattcaaggactagtgtttgagctcatcatgtt |
37072510 |
T |
|
| Q |
415 |
tcaagtactctagtttatctaagtttctttaggaagttgtaatttagtctgtgttacatttcgtttcaatatatagaaaattgttagatggataatcagc |
514 |
Q |
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| T |
37072511 |
tcaagtactctagtttatctaagtttctttaggaagttgtaatttagtctgtgttacatttcgtttcaatatatagaaaattgttagatggataatcagc |
37072610 |
T |
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| Q |
515 |
tttcaatgtgatgt |
528 |
Q |
| |
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|||||||||||||| |
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| T |
37072611 |
tttcaatgtgatgt |
37072624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 15 - 190
Target Start/End: Complemental strand, 43218659 - 43218484
Alignment:
| Q |
15 |
tactccactaactacttggttttcgacctgcagagtttgagtggacctgtgtcagctaccctttaccttggctattcactactcatggcaattgcaatca |
114 |
Q |
| |
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||||||| ||||||||||||||| ||| |||||||||||||||||||||| || |||| ||||| | |||||||| || ||||||||||||||||||| |
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| T |
43218659 |
tactccattaactacttggtttttgacttgcagagtttgagtggacctgtctctgctatactttatatcggctattcgctgctcatggcaattgcaatca |
43218560 |
T |
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| Q |
115 |
tgttgtcaactggcaccattggcttccttatgtcattctactttgtgcactacttgttctcatcagtgaagataga |
190 |
Q |
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|| | |||||||| |||||||| |||||| | || |||||||||||||| || |||||||||||||| |||||||| |
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| T |
43218559 |
tgctttcaactggaaccattggtttccttgtctcgttctactttgtgcattatttgttctcatcagtaaagataga |
43218484 |
T |
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