View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8423_low_4 (Length: 483)
Name: NF8423_low_4
Description: NF8423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8423_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 426; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 20 - 465
Target Start/End: Original strand, 35128027 - 35128472
Alignment:
| Q |
20 |
tggaggtacaattatggaagggtttgatgaaagtgaagaatttaaagaacccttcgagtttggtgtcacaaatgttgttttagaggaatgtgaggatgag |
119 |
Q |
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| T |
35128027 |
tggaggtacaattatggaagggtttgatgaaagtgaagaatttaaagaacccttcgagtttggtgtcacaaatgttgttttagaggaatgtggagatgag |
35128126 |
T |
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| Q |
120 |
gtcgaagagggtgatatagaggaggaagcaatgcataaagaaacaaaagggctattagaaaaaattagagatgagggtagaaatgatatgagaggagaat |
219 |
Q |
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| T |
35128127 |
gtggaagagggtgatatagaggaggaagcaatgcataaagaaacaaaagggctattagaaaaaattagagatgagggtagaaatgatatgagaggagaat |
35128226 |
T |
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| Q |
220 |
atgcaaaaggagtttccagtggaacaagtgaaagccatcaagatattggttcagttgttgaaaatgtggaagcagaacaggaagacaaacatgatttgtg |
319 |
Q |
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| T |
35128227 |
atgcaaaaggagtttccagtggaacaagtgaaagccatcaagatattggttcagttgttgaaaatgtggaagcagaacaggaagacaaacatgatttgtg |
35128326 |
T |
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| Q |
320 |
gactgaaggagaaatgaggagtcaagaagattcaaaagtatgcaaggatacagttcaatcaagaaatgatgatgataagggtaatgtttgcaatgaggta |
419 |
Q |
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| T |
35128327 |
gactgaaggagaaatgaggagtcaagaagattcaaaagtatgcgaggatacagttcaatcaagaaatgatgatgataagggtaatgtttgcaatgaggta |
35128426 |
T |
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| Q |
420 |
gaattaggtgaatctgcaagaggtaatttagagttagaagttgatg |
465 |
Q |
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| T |
35128427 |
gaattaggtgaatctgcaagaggtaatttagagttagaggttgatg |
35128472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 278 - 465
Target Start/End: Original strand, 35128636 - 35128826
Alignment:
| Q |
278 |
tgaaaatgtggaagcagaacaggaagacaaacatgatttgtggactgaaggagaaatgaggagtcaagaagattcaaaagtatgcaaggatacagttcaa |
377 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||| |||| |||| |
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| T |
35128636 |
tgaaaatgtggaagcaggacaggaagacaaacatgatttgtggactgaaggagaaatgagaaatcaagaagattcaaaagtatgcgaggagacagctcaa |
35128735 |
T |
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| Q |
378 |
tcaagaaatgatgatg---ataagggtaatgtttgcaatgaggtagaattaggtgaatctgcaagaggtaatttagagttagaagttgatg |
465 |
Q |
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| T |
35128736 |
tcaagaaatgatgatgataataagggaagtgtattcaatgaggtagaatcaggcgaaccttcaagaggtaatttagagttagaggttgatg |
35128826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 156 - 376
Target Start/End: Complemental strand, 26779045 - 26778813
Alignment:
| Q |
156 |
aaagaaacaaaagggctattagaaa------aaattagagatgagggtagaaatgatatgagaggagaatatgcaaaaggagtttccagtggaaca---- |
245 |
Q |
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||||||||||||||||||||||||| |||| |||||||||||||| | |||||||||||||||| |||||||||| || | ||||||||| |
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| T |
26779045 |
aaagaaacaaaagggctattagaaagaaaaaaaatcagagatgagggtaggactgatatgagaggagaagatgcaaaagggattcctagtggaacagtga |
26778946 |
T |
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| Q |
246 |
-agtgaa-agccatcaagatattggttcagttgttgaaaatgtggaagcagaacaggaagacaaacatgatttgtggactgaaggagaaatgaggagtca |
343 |
Q |
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| T |
26778945 |
gagtgatcatgaatcatgatattggtccagttgttgaaaatatgcaagtagcactggaagacaaactgggtttggggattgatggagaaatgaggaatca |
26778846 |
T |
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| Q |
344 |
agaagattcaaaagtatgcaaggatacagttca |
376 |
Q |
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| T |
26778845 |
aacagattcaagagtatgctaggagacggttca |
26778813 |
T |
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