View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8423_low_5 (Length: 436)
Name: NF8423_low_5
Description: NF8423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8423_low_5 |
 | |
|
| [»] scaffold0072 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 7729395 - 7729166
Alignment:
| Q |
18 |
tgaccaaccactcataaaggccttgatgtgttcgaaaggaagtcttgtgtctatcctcaggtgtgactagaatgtggtggtagccagaccttaattcaag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7729395 |
tgaccaaccactcataaaggccttgatgtgttcgaaaggaagtcttgtgtctatcctcaggtgtgactagaatgtggtggtagccagaccttaattcaag |
7729296 |
T |
|
| Q |
118 |
tttagaaaaatattatgcaccaagcaattcatctaagatttcatccactattggtataggagaactgtctttgatagtgatggtgttcaaagccctgtaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7729295 |
tttagaaaaatattatgcaccaagcaattcatctaagatttcatccacaattggaataggaaaactgtctttgatagtgatggtgttcaaagccctgtaa |
7729196 |
T |
|
| Q |
218 |
tccgtgcaaaatctccaagagccatccttc |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
7729195 |
tccgtgcaaaatctccaagagccatccttc |
7729166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 330 - 427
Target Start/End: Complemental strand, 7729083 - 7728986
Alignment:
| Q |
330 |
ccgagtttagaaatctttgtggtagtgattctcactttgtacaccaaccatcatatctgccgccctaaaccaccagtgaccaccaccttcgtaccacc |
427 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7729083 |
ccgagtttagaaatctttgtggtggtgattctcactttgttcaccaaccatcatatctgccgccctaaaccaccagtgaccaccaccttcgtaccacc |
7728986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 243
Target Start/End: Complemental strand, 42809 - 42679
Alignment:
| Q |
113 |
tcaagtttagaaaaatattatgcaccaagcaattcatctaagatttcatccactattggtataggagaactgtctttgatagtgatggtgttcaaagccc |
212 |
Q |
| |
|
||||| ||||||||||| | |||||| | | |||||| || | |||||||||| | || || ||| |||| ||||||| |||||| | |||||| |||| |
|
|
| T |
42809 |
tcaagcttagaaaaatagcaagcaccatgtagttcatccaatagttcatccactgtaggaatgggaaaactatctttgacagtgatagagttcaatgccc |
42710 |
T |
|
| Q |
213 |
tgtaatccgtgcaaaatctccaagagccatc |
243 |
Q |
| |
|
||||||| || ||||| |||||||| ||||| |
|
|
| T |
42709 |
tgtaatcagtacaaaacctccaagacccatc |
42679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University