View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8423_low_6 (Length: 426)
Name: NF8423_low_6
Description: NF8423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8423_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 31450327 - 31450735
Alignment:
| Q |
1 |
tggagaaaccgcaaatctcattgatgatttacaataaactttaatttgcgtacacaatatcaattgcagaattttagacaagaacttaagtcacacttag |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
31450327 |
tggagaaaccgcaaatcttattgatgatttacaataaactttaatttgcgtacaccatatcaattgcagaattttagacaagaacttgagtcacacttag |
31450426 |
T |
|
| Q |
101 |
tgtgagttgaaattctaattacatgtcccaaccacaattgatctaatcacatcattttcgtgcaatacctttcttggtacctttgaaatgaaagttgaaa |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31450427 |
tgtgagttgaaagtctaattacatgtcccaaccacaattgatctaatcacatcattttcgtgcaatacctttcttggtacctttgaaatgaaagttgaaa |
31450526 |
T |
|
| Q |
201 |
ataaaaactactataaacatttgaggatacctttgaaaattttaactcttaatgcaaaattttgaaccctagttgannnnnnnaaaaggatgaacccttg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
31450527 |
ataaaaactactataaacatttgaggatacctttgaaaattttaactcttaatgcaaaattttgaaccctagttgattttttttaaaggatgaacccttg |
31450626 |
T |
|
| Q |
301 |
ttgatgacaagtcaaaacaaaatatatggacccattttagctctttaaataaaataattcaaggccggctgaaaatgagtcattaatggcatatgggaat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31450627 |
ttgatgacaagtcaaaacaaaatatatggacccattttagctctttaaataaaataattcaaggccggctgaaaatgagtcattaatggcatatgggaat |
31450726 |
T |
|
| Q |
401 |
cggaataat |
409 |
Q |
| |
|
||||||||| |
|
|
| T |
31450727 |
cggaataat |
31450735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University