View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8424_low_1 (Length: 531)
Name: NF8424_low_1
Description: NF8424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8424_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 15 - 369
Target Start/End: Original strand, 34691484 - 34691838
Alignment:
| Q |
15 |
atgaactcagattgcctctactggaaccattcggtggtaaacactcttttcaaccaacaagacacagcggctgtgattacaacgcctctctttcgtcgtc |
114 |
Q |
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| T |
34691484 |
atgaactcatattgcctctactggaaccattcggtggtaaacactcttttcaaccaacaagacgcagcggctgtgattacaacgcctctctttcgtcgtc |
34691583 |
T |
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| Q |
115 |
ctttggttgacacaaggatatgaaagcaacttcaaacggggagtattcagtaaaatctgcttacagattatgtgtagatctgctcctcccccatgctcct |
214 |
Q |
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| T |
34691584 |
ctttgattgacacaaggatatgaaagcaacttcaaacggggagtattcagtaaaatctgcttacagattatgtgtagatctgctcctcccccatgctcct |
34691683 |
T |
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| Q |
215 |
gcgcatcataatttcccttgggtgagcatattgaatgttcaaattcctttaagggtgaggtcctaccacactacttgaggtattccatgcgacgattctt |
314 |
Q |
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| T |
34691684 |
gcgcatcataatttcccttgggtgagcatattgaatgttcaaattccttcaagggtgaggtcctaccacactacttgaggtattccatgcgacgattctt |
34691783 |
T |
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| Q |
315 |
gtgtggtatgcgagttattggctgaataccacatgcacctcttctttgtgtgtga |
369 |
Q |
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| T |
34691784 |
gtgtggtatgcgagttattggctgaataccatatgcacctcttctttgtgtgtga |
34691838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 368 - 514
Target Start/End: Original strand, 34691860 - 34692006
Alignment:
| Q |
368 |
gaatattggtatagggaacttaatccgggaactgttgagctaacaatttctctactttgttatttgatttcttgagaaggataacagttcaacagcagca |
467 |
Q |
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| T |
34691860 |
gaatattggtatggggaacttaatccgagaactgttgagctaacaatttctctactttgttatttgatttcttgagaaggataacagttcaacaacagca |
34691959 |
T |
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| Q |
468 |
gattgttgcaatggtactttggatggaagagccgcaacgcaaagctt |
514 |
Q |
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| T |
34691960 |
gattgttgcaatggtactttggatggaagagccacaacgcaaagctt |
34692006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 291 - 369
Target Start/End: Complemental strand, 33704362 - 33704284
Alignment:
| Q |
291 |
gaggtattccatgcgacgattcttgtgtggtatgcgagttattggctgaataccacatgcacctcttctttgtgtgtga |
369 |
Q |
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| T |
33704362 |
gaggtattccatgcaacgattcttgtgtggtatgtgaattattggttgaatcccacatgcacctcttcttcgtgtgtga |
33704284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 368 - 438
Target Start/End: Complemental strand, 33704262 - 33704187
Alignment:
| Q |
368 |
gaatattggtatagggaacttaatccgggaactgtt-----gagctaacaatttctctactttgttatttgatttc |
438 |
Q |
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| T |
33704262 |
gaatattggtatggggaacttaatccgggaactgttgagccgagctaacaatttctctactttattatttgatttc |
33704187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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