View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8424_low_2 (Length: 278)
Name: NF8424_low_2
Description: NF8424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8424_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 33 - 172
Target Start/End: Complemental strand, 10035276 - 10035137
Alignment:
| Q |
33 |
atggctaatttattctcgacgagtatatgcaagacgcacaaccactcgcggcaaggaaagggaaacaatacaacaaggtgccgcctatatgcgtgacacc |
132 |
Q |
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| T |
10035276 |
atggctaatttattctcgacgagtatatgcaagacgcacaaccactcgcggcaaggaaagggaaacaatacaacaaggtgccgcctatatgcgtgacacc |
10035177 |
T |
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| Q |
133 |
tccacccaagaagaaaccaaccacaaaacccaacaaaggc |
172 |
Q |
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| T |
10035176 |
tccacccaagaagaaaccaaccacaaaacccaacaaaggc |
10035137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 31 - 172
Target Start/End: Complemental strand, 10095647 - 10095506
Alignment:
| Q |
31 |
aaatggctaatttattctcgacgagtatatgcaagacgcacaaccactcgcggcaaggaaagggaaacaatacaacaaggtgccgcctatatgcgtgaca |
130 |
Q |
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| T |
10095647 |
aaatggctaatttattctcgacgagtatatgcaagacgcacaaccactcgcggcaagaaaagggaaacaatacaacaaggtgccgcctatatgcgtgaca |
10095548 |
T |
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| Q |
131 |
cctccacccaagaagaaaccaaccacaaaacccaacaaaggc |
172 |
Q |
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| T |
10095547 |
cctccacccaagaagaaaccaaccacaaaacccaacaaaggc |
10095506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 10035137 - 10035085
Alignment:
| Q |
217 |
ccagcctcactgcctaaaatccaaacaggcgcacatgcccagcaacaccaaac |
269 |
Q |
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| T |
10035137 |
ccagcctcactgcctaaaatccaaacaggcgcacatgcccagcaacaccaaac |
10035085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 10095506 - 10095454
Alignment:
| Q |
217 |
ccagcctcactgcctaaaatccaaacaggcgcacatgcccagcaacaccaaac |
269 |
Q |
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| T |
10095506 |
ccagcctcactgcctaaaatccaaacaggcgcacatgcccagcaacaccaaac |
10095454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 90
Target Start/End: Complemental strand, 31301698 - 31301637
Alignment:
| Q |
31 |
aaatggctaa-tttattctcgacgagtatatgcaagacgcac-aaccactcgcggcaaggaa |
90 |
Q |
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| T |
31301698 |
aaatggctaaatttattctcgacgagtatatgcaaaatgcacaaagaactcgcggcaaggaa |
31301637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 31034327 - 31034371
Alignment:
| Q |
39 |
aatttattctcgacgagtatatgcaagacgcacaaccactcgcgg |
83 |
Q |
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| T |
31034327 |
aatttattctcgtcgagtaaatgcaagacgcataaacactcgcgg |
31034371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 7226705 - 7226665
Alignment:
| Q |
31 |
aaatggctaatttattctcgacgagtatatgcaagacgcac |
71 |
Q |
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| T |
7226705 |
aaatggcgaatttattcacgacgagtatatgcaagaagcac |
7226665 |
T |
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