View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8425_high_3 (Length: 486)
Name: NF8425_high_3
Description: NF8425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8425_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 392; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 18 - 478
Target Start/End: Complemental strand, 41145332 - 41144868
Alignment:
| Q |
18 |
ctatataatatgaaaagtggagcacctttgttacaagcaaagagcaagaagttctttaggagtgtagcatctat----cctgattgatttcttgtgcttg |
113 |
Q |
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| T |
41145332 |
ctatataatatgagaagtggagcacctttgttacaagcaaagagcaagaagtcctttgggagtgtagcatctatatatcctggttgatttcttgtgcttg |
41145233 |
T |
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| Q |
114 |
agaaaggtaagttcttaccttatcttacctctcatctctctttcccatattcagattttgatgatagtgtttccaatgccattaatttataatgtcaata |
213 |
Q |
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| T |
41145232 |
agaaaggtaagttcttaccttaccttacctctcatctctctttcccatattcagattttgatgatagtgtttccaatgccattaatttataatgtcaata |
41145133 |
T |
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| Q |
214 |
tagtatatgaattaactaaacctgaccatatgtgatgtataatgtactatgcttaaatttttgtgaaaatttctgctcacattattattatattcaatat |
313 |
Q |
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| T |
41145132 |
tagtatatgaattaactaaacctgaccatatgtgatgtataatgtactatgcttaaatttttgtgaaaatttctgctcacattattataatattcaatat |
41145033 |
T |
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| Q |
314 |
gatgaattacttataagtaatacaacaaattaaaatttcctgtctccttggtgctaacacatattttacttgtcctgannnnnnnnctttcagatatgga |
413 |
Q |
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| T |
41145032 |
catgaattacttataagtaatacaacaaattaaaatttcctgtctccttggtgctaacacatactttacttgtcctgattttttttctttcagatatgga |
41144933 |
T |
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| Q |
414 |
ttatggtagtggtgctatgctctttttgttgacatgcattgtcacatacttttttggttcatttc |
478 |
Q |
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| T |
41144932 |
ttatggtagtggtgctatgctctttttgttgacatgcattgtcacatacttttttggttcatttc |
41144868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 41120955 - 41120919
Alignment:
| Q |
172 |
tgatgatagtgtttccaatgccattaatttataatgt |
208 |
Q |
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| T |
41120955 |
tgatgatagtgtttccaatgccattaatttataatgt |
41120919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 433 - 474
Target Start/End: Complemental strand, 41120497 - 41120456
Alignment:
| Q |
433 |
ctctttttgttgacatgcattgtcacatacttttttggttca |
474 |
Q |
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| T |
41120497 |
ctctttttgctgacatgcattgtcacgtacttttttggttca |
41120456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 474
Target Start/End: Original strand, 41033691 - 41033744
Alignment:
| Q |
421 |
agtggtgctatgctctttttgttgacatgcattgtcacatacttttttggttca |
474 |
Q |
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| T |
41033691 |
agtggtgcaatgctccttttgatgacatgcatggtcacatactttatttgttca |
41033744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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