View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8425_low_1 (Length: 694)
Name: NF8425_low_1
Description: NF8425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8425_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Original strand, 31622162 - 31622590
Alignment:
| Q |
1 |
acatctttgcatagtaaaagcataaatagctgaacgagtgaacggagcaaatgttaaaattaaccaaggaatgaagaacataccctgtttaacttcacca |
100 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
31622162 |
acatcattgcatagtaaaagcataaatagctgaacgagtgaacggagcaaatgttaaaattaaccaagggatgaagaacataccctgtttaacttcacca |
31622261 |
T |
|
| Q |
101 |
aactttttaaatgcttccctcagagtctcggatgtagtacgcttgttaagacctgaaagttacgacacatttaaaaccaacaatcaaatgaatattatga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
31622262 |
aactttttaaatgcttccctcagagtctcggatgtagtacgcttgttaagacctgaaagttaagacacatt-aaaaccaacaatcaaatgaa-------- |
31622352 |
T |
|
| Q |
201 |
aagagaaattgaattggacaaagaatgaccttatcaatgcaatagacaacttcagttttatttatgg---ggggaagagaagataaaaattgaaaatgac |
297 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
31622353 |
-agacaaattgaattggacaaagaatgaccttatcaatgcaatagacaacttcatttttatttatggcagggggaagaggagataaaaattgaaaatgac |
31622451 |
T |
|
| Q |
298 |
agttgtaacatgaatggtgtgtttaaagagggaaaattaaggggaatgctgtttagcatctccacaacatgcaatttgtgggttgaaatcaaaatagcta |
397 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31622452 |
agttgtaacatgaatggtgtgtttaaagagggaaaattaaggggaatgctgtttagcatctccacaccatgcaatttgtgggttgaaatcaaaatagcta |
31622551 |
T |
|
| Q |
398 |
gggaaatttcttttttgaatgacaaatgttagtatgtta |
436 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| |
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|
| T |
31622552 |
gggaaatttcttttttgaatgagaaatgttagtatgtta |
31622590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 549 - 678
Target Start/End: Original strand, 31622597 - 31622726
Alignment:
| Q |
549 |
tttgtcgagattgaaccaagtcttaaactcaaacaagttgaactactcagcctctaagaagagatgatcctttgttgaacatcaaaataannnnnnnnaa |
648 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
31622597 |
tttgtcgagattgaaccaagtcttaaactcaaaccagttgaactactcagcctctaagaagagatgatcctttgttgaacatcaaaataattttttttaa |
31622696 |
T |
|
| Q |
649 |
gcaatttgtaacaaacggaaccataacaag |
678 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
31622697 |
gcaatttgtaacaaacggaaccataacaag |
31622726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 196
Target Start/End: Original strand, 31626652 - 31626758
Alignment:
| Q |
91 |
aacttcaccaaactttttaaatgcttccctcagagtctcggatgtagtacgcttgttaagacctgaaa-gttacgacacatttaaaaccaacaatcaaat |
189 |
Q |
| |
|
|||||| || ||||||| ||||||||||||||| ||||| | ||||||||| ||| |||| ||||||| ||| ||||||| |||| ||||| |||| | |
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| T |
31626652 |
aacttcgccgaacttttgaaatgcttccctcagtgtctctgttgtagtacgtttgctaagccctgaaattttaagacacatcaaaaatcaacagtcaact |
31626751 |
T |
|
| Q |
190 |
gaatatt |
196 |
Q |
| |
|
||||||| |
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|
| T |
31626752 |
gaatatt |
31626758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 408 - 438
Target Start/End: Original strand, 26413391 - 26413421
Alignment:
| Q |
408 |
ttttttgaatgacaaatgttagtatgttaat |
438 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
26413391 |
ttttttgaatgacaaatgttagtatgttaat |
26413421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 440 - 474
Target Start/End: Original strand, 43183773 - 43183807
Alignment:
| Q |
440 |
cctttagctcaaaccagttgatctacccaaccccc |
474 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |
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|
| T |
43183773 |
cctttagctcaaaccagttgagctacccaaccccc |
43183807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 437
Target Start/End: Original strand, 51239870 - 51239899
Alignment:
| Q |
408 |
ttttttgaatgacaaatgttagtatgttaa |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
51239870 |
ttttttgaatgacaaatgttagtatgttaa |
51239899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 438 - 474
Target Start/End: Original strand, 33872869 - 33872905
Alignment:
| Q |
438 |
tccctttagctcaaaccagttgatctacccaaccccc |
474 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |
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| T |
33872869 |
tccctttagctcaaaccagttgagttacccaaccccc |
33872905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 408 - 436
Target Start/End: Original strand, 32997437 - 32997465
Alignment:
| Q |
408 |
ttttttgaatgacaaatgttagtatgtta |
436 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
32997437 |
ttttttgaatgacaaatgttagtatgtta |
32997465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 434 - 474
Target Start/End: Complemental strand, 36959421 - 36959382
Alignment:
| Q |
434 |
ttaatccctttagctcaaaccagttgatctacccaaccccc |
474 |
Q |
| |
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|||||||||| |||||||||||||||| ||||||||||||| |
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|
| T |
36959421 |
ttaatccctt-agctcaaaccagttgagctacccaaccccc |
36959382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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