View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8425_low_2 (Length: 684)
Name: NF8425_low_2
Description: NF8425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8425_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 275 - 673
Target Start/End: Complemental strand, 34101786 - 34101388
Alignment:
| Q |
275 |
cctctgctaagtaaaccttcgttatatttctgcaacatatcatcaatttcttccacatatgtttctttcggcggtggcaaaacagaattagccgtagaat |
374 |
Q |
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| T |
34101786 |
cctctgctaagtaaaccttcgttatatttctgcaacatatcatcaatttcttccacatatgtttctttcggcggtggcaaaacagaattagccgtagaat |
34101687 |
T |
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| Q |
375 |
tttcagcgaatcttccaacaccggagtttgtagtggaaatcaaatctccaccgtccgtttcatcagaacttccaacaacaacaacaggacatttgcaatg |
474 |
Q |
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| T |
34101686 |
tttcagcgaatcttccaacaccggagtttgcagtggaaatcaaatctccaccgtccgtttcatcagaacttcccacaacaccaacaggacattcgcaatg |
34101587 |
T |
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| Q |
475 |
gcgaacgcaatactcgcccccttccaacgataagcgcgctgaggttgagagtgttgatctctaagcagagacgctccttgatttcatgatccatcacaat |
574 |
Q |
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| T |
34101586 |
gcgaacgcaatactcgcccccttccaacgataagcgcgctgaggttgagactgttgatctctaagcagagacgctccttgatttcatgatccatcacaat |
34101487 |
T |
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| Q |
575 |
atggagattgtgaggaatctgtgcttgaagtaacggtttcgcaaaatcgttaagtttggaaatcgtgtacacgtggaagtagtttttcatcttcttcat |
673 |
Q |
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| T |
34101486 |
gtggagattgtaaggaatctgtgcttgaagtaacgatttcgcaaaatcgtcaagtttggaaatcgtgtacacgtggaagtagtttttcatcttcttcat |
34101388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 34102041 - 34101925
Alignment:
| Q |
20 |
gatagcttataaaaacaactaataacttatacnnnnnnncgtttgactttattttatctcataggaatagcttatacataagcacttatgctgatctctc |
119 |
Q |
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| T |
34102041 |
gatagcttataaaaacaactaataacttatacaaaaaaacgtttgactttattttatctcataggaatagcttatacataagcacttatgctgatctctc |
34101942 |
T |
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| Q |
120 |
actatcccaattccatt |
136 |
Q |
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| T |
34101941 |
actatcccaattccatt |
34101925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 7751487 - 7751519
Alignment:
| Q |
19 |
agatagcttataaaaacaactaataacttatac |
51 |
Q |
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| T |
7751487 |
agatagcttataaaaacaacttataacttatac |
7751519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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