View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8425_low_5 (Length: 307)
Name: NF8425_low_5
Description: NF8425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8425_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 27220082 - 27219914
Alignment:
| Q |
1 |
gcacaagctatcaaaagagcaaaacctatggtatgtatgaattgaatgttatatattataatagttgtagtaaactattttagattaaacaaattaaaag |
100 |
Q |
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| T |
27220082 |
gcacaggctatcaaaagagcaaaacctatggtatgtatgaattgaatgttatatattataatagttgtagtaaactattttagattaaacaaattaaagg |
27219983 |
T |
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| Q |
101 |
tgtgtctggtgtctgagatgtatctatagatgacactcacacacatatatagttacattcaatcacttt |
169 |
Q |
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| T |
27219982 |
cgtgtctggtgtctgacatgtatctatagatgacactcacacacacatatggttacattcaatcacttt |
27219914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 130 - 288
Target Start/End: Complemental strand, 27219913 - 27219756
Alignment:
| Q |
130 |
atgacactcacacacatatatagttacattcaatcacttttatgttttcaaattattacttgtattaatttcatgtctggtgtcggtatgaacatttcat |
229 |
Q |
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| T |
27219913 |
atgacactcacacacacatatggttacattcaatcacttttatgttttcaaattgttacttgtattaatttcatgtctggtgtcggtatgaacatttcat |
27219814 |
T |
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| Q |
230 |
aggtagacggattgaattgaatttagtgtaaggatttaatttgaacatactcaacagtg |
288 |
Q |
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| T |
27219813 |
aggtagac-gactgaattgaatttagtgtaaggatttaatttgtacatactcaacagtg |
27219756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 281
Target Start/End: Complemental strand, 27217153 - 27217115
Alignment:
| Q |
243 |
gaattgaatttagtgtaaggatttaatttgaacatactc |
281 |
Q |
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| T |
27217153 |
gaattgaatttagtgtaaggatttaatttgtacatactc |
27217115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Complemental strand, 24047831 - 24047803
Alignment:
| Q |
244 |
aattgaatttagtgtaaggatttaatttg |
272 |
Q |
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| T |
24047831 |
aattgaatttagtgtaaggatttaatttg |
24047803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 189
Target Start/End: Original strand, 8013854 - 8013891
Alignment:
| Q |
152 |
gttacattcaatcacttttatgttttcaaattattact |
189 |
Q |
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| T |
8013854 |
gttacattcaatcacttatattttttcaaattattact |
8013891 |
T |
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