View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8425_low_6 (Length: 262)
Name: NF8425_low_6
Description: NF8425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8425_low_6 |
 | |
|
| [»] scaffold0202 (1 HSPs) |
| | |
|
| [»] scaffold0016 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 88 - 242
Target Start/End: Complemental strand, 31093449 - 31093295
Alignment:
| Q |
88 |
ttctccctaaaagcagaatttcttctccaaattcatcaaaaggcacgccgatcatatcaccaaaactccaacactttcaaaacattgtattacctgactc |
187 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
31093449 |
ttctccctaaaagctgaatttcttctccaaattcatcaaaaggcacgccaatcatatcaccacaactccaacactttcaaaacattgtattacctgacga |
31093350 |
T |
|
| Q |
188 |
ccactttagaagtaatgattgtaaccatccctgaaattagaacaagttcctaaac |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31093349 |
ccactttagaagtaatgattgtaaccatccctgaaattagaacaagttcctaaac |
31093295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 31093571 - 31093508
Alignment:
| Q |
19 |
acacgcccgcgcagactaagcaactgactgattacacaaggaccacacaccaacactaaactca |
82 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31093571 |
acactcccgagcagactaagcaactgactgattacacaaggaccacacaccaacactaaactca |
31093508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 31033742 - 31033790
Alignment:
| Q |
31 |
agactaagcaactgactgattacacaaggaccacacaccaacactaaac |
79 |
Q |
| |
|
|||||||||| |||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
31033742 |
agactaagcagctgactgactacacaaggatcacacaccaacactaaac |
31033790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 2239 - 2053
Alignment:
| Q |
19 |
acacgcccgcgcagactaagcaactgactgattacacaaggaccacacaccaacactaaactcattgttttctccctaaaagcagaatttcttctccaaa |
118 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| | |||||||||||||||| |
|
|
| T |
2239 |
acactcccgagcagactaagcaactgactgattacacaaggaccacacaccaacactg-----------tgctccctaaaaactgaatttcttctccaaa |
2151 |
T |
|
| Q |
119 |
ttcatcaaaaggcacgccgatcatatcaccaaaactccaacactttcaaaacattgtattacctgactcccactttagaagtaatgattgtaaccatc |
216 |
Q |
| |
|
||| ||||||||||||||||||||| ||||| ||||||| || ||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2150 |
ttcttcaaaaggcacgccgatcataccaccaccactccaaaaccttcgaaacattgcattacctgactcccactttagaagtaatgattgtaaccatc |
2053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 31261 - 31213
Alignment:
| Q |
31 |
agactaagcaactgactgattacacaaggaccacacaccaacactaaac |
79 |
Q |
| |
|
|||||||||| |||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
31261 |
agactaagcagctgactgactacacaaggatcacacaccaacactaaac |
31213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University