View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8426_high_11 (Length: 264)
Name: NF8426_high_11
Description: NF8426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8426_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 53430880 - 53431079
Alignment:
| Q |
19 |
atggtgctggtttcataaacaagacctggtcggtatgattcagttggtgttatttcacctgctccatagtcataaggtgtggcaatcgaccctaaatctg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53430880 |
atggtgctggtttcataaacaagacctggtcggtatgattcagttggtgttatttcacctgctccatagtcataaggtgtggcaatcgaccctaaatctg |
53430979 |
T |
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| Q |
119 |
ttgtaatgggatccttcaagttgttaacttgagttgctgaatttagaaaaaataggaatttatgagttgatagataggattacatttacatacatacatt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53430980 |
ttgtaatgggatccttcaagttgttaacttgagttgctgaatttagaaaaaataggaatttatgagttgatagataggattacatttacatacatacatt |
53431079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 53422918 - 53423068
Alignment:
| Q |
19 |
atggtgctggtttcataaacaagacctggtcggtatgattcagttggtgttatttcacctgctccatagtcataaggtgtggcaatcgaccctaaatctg |
118 |
Q |
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|||||||||||||||||||| || |||||| || ||||||||| | ||| ||||| ||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
53422918 |
atggtgctggtttcataaactagccctggttggaatgattcagatattgtaatttcccctgctccatagtcataaggtgtggcaattgaccctaaatccg |
53423017 |
T |
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| Q |
119 |
ttgtaatgggatccttcaagttgttaacttgagttgctgaatttagaaaaa |
169 |
Q |
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|||||||||||||||||| ||||||| ||||||||||| |||| |||||| |
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| T |
53423018 |
ttgtaatgggatccttcatattgttaatttgagttgctgcattttgaaaaa |
53423068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 167
Target Start/End: Original strand, 26095267 - 26095415
Alignment:
| Q |
19 |
atggtgctggtttcataaacaagacctggtcggtatgattcagttggtgttatttcacctgctccatagtcataaggtgtggcaatcgaccctaaatctg |
118 |
Q |
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|||||||||||||||||||| || |||||| || || |||||||| |||||| | || |||||||||||||||||||||||||| |||||||||||| |
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| T |
26095267 |
atggtgctggtttcataaacgagccctggttggagtggttcagttgttgttatccccccagctccatagtcataaggtgtggcaattaaccctaaatctg |
26095366 |
T |
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| Q |
119 |
ttgtaatgggatccttcaagttgttaacttgagttgctgaatttagaaa |
167 |
Q |
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||| ||||||| |||||| ||||||| ||||||||||| ||||||||| |
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| T |
26095367 |
ttgcaatgggacccttcatattgttaatttgagttgctgcatttagaaa |
26095415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 48374936 - 48374785
Alignment:
| Q |
19 |
atggtgctggtttcataaacaagacctggtcggtatgattcagttggtgttatttcacctgctccatagtcataaggtgtggcaatcgaccctaaatctg |
118 |
Q |
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|||||||| ||||||||||| ||||||||| || |||||||| ||| |||||| || |||||||||||||||||||||||||||| ||||||||||||| |
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| T |
48374936 |
atggtgctagtttcataaacgagacctggttggaatgattcaattgttgttatgtcccctgctccatagtcataaggtgtggcaactgaccctaaatctg |
48374837 |
T |
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| Q |
119 |
ttgtaatgggatccttcaagttgttaacttgagttgctgaatttagaaaaaa |
170 |
Q |
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| ||||||||| |||||| || |||| ||| ||||||| || | ||||||| |
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| T |
48374836 |
tagtaatgggagccttcatattattaatttgtgttgctgcatatcgaaaaaa |
48374785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 53307720 - 53307870
Alignment:
| Q |
19 |
atggtgctggtttcataaacaagacctggtcggtatgattcagttggtgttatttcacctgctccatagtcataaggtgtggcaatcgaccctaaatctg |
118 |
Q |
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|||||||| ||||||||||| || || ||| || ||| |||||||| ||||||||| ||||||||||||||||||||||||||||| ||||| |||| | |
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| T |
53307720 |
atggtgctagtttcataaactagcccgggttggaatggttcagttgttgttatttctcctgctccatagtcataaggtgtggcaattgaccccaaattcg |
53307819 |
T |
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| Q |
119 |
ttgtaatgggatccttcaagttgttaacttgagttgctgaatttagaaaaa |
169 |
Q |
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| ||||||||| |||||| ||||||| ||||| ||||| ||||| ||||| |
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| T |
53307820 |
tggtaatgggagccttcatattgttaatttgagctgctgcatttataaaaa |
53307870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 248
Target Start/End: Original strand, 53431090 - 53431122
Alignment:
| Q |
216 |
attgagttgacagatatacctgaggtcatgatg |
248 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
53431090 |
attgagttgacagatatacctgaggtcatgatg |
53431122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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