View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8426_high_15 (Length: 240)
Name: NF8426_high_15
Description: NF8426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8426_high_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 26656702 - 26656479
Alignment:
| Q |
1 |
tgtccgacactaaaatgtgtcagtgataataggttgcaacaaaaatctttagatcaaatcatgaattataaactgttctc---aaattttgaaaagcata |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||| |||| |
|
|
| T |
26656702 |
tgtccgacactaaaatgtgtcagtgataataggttgcaacaaaaatctttagatcaaatcatgaattaaaaattgttctcctcaaattttgaaaaacata |
26656603 |
T |
|
| Q |
98 |
ctctaaaaatgatttgatcgtacaataaacagaacaaaaacagcataaatgttcaatggaaacgaatgaagatataccagaacgtgaagtaattgatgtc |
197 |
Q |
| |
|
||| ||||||||||| | |||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
26656602 |
ctc--aaaatgatttgcacatacaataaacagaacaaaaacagcatgaatgttcaatgcaaaccaatgaagatataccagaacgtgaagtaattgatgtc |
26656505 |
T |
|
| Q |
198 |
agtgcaaagttcctgagcctagtaat |
223 |
Q |
| |
|
|||||||| ||||||||||||||||| |
|
|
| T |
26656504 |
agtgcaaaattcctgagcctagtaat |
26656479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 145 - 223
Target Start/End: Complemental strand, 26643088 - 26643010
Alignment:
| Q |
145 |
aatgttcaatggaaacgaatgaagatataccagaacgtgaagtaattgatgtcagtgcaaagttcctgagcctagtaat |
223 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||| |
|
|
| T |
26643088 |
aatgttcaatgcaaacgaatgaagatataccagaacgtgaagtaatcgatgccagtgaaaagttcctgagcctagtaat |
26643010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University