View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8426_high_2 (Length: 683)
Name: NF8426_high_2
Description: NF8426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8426_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 481; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 18 - 626
Target Start/End: Original strand, 7387293 - 7387904
Alignment:
| Q |
18 |
caaagctcactcctctcactcgtctcttattccattactatctataagccatactcaacaatctttacattgacgaatatcaaacccttatgaagatttt |
117 |
Q |
| |
|
|||||||| ||| ||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7387293 |
caaagctcgctcttctcacttgtctcttattccattactatctatgagccatattcaacaatctttacattgacgaatatcaaacccttatgaaattttt |
7387392 |
T |
|
| Q |
118 |
ttgcgcgacatttacaatatgacaaccgaaagacacaacttctt---gaacttgtcattggtgattgacttggtcaaacatatcaattgcattctctaat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7387393 |
ttgcgcgacatttacaatatgacaaccgaaagacacaacttcttcttgaacttatcattggtgattgacttggtcaaacatatcaatggcattctctaat |
7387492 |
T |
|
| Q |
215 |
atacatatcttttcacatgcaaataactttgannnnnnngaaacttcacattaatgtattaggtctcacctaattatttattaaataaatgacactctta |
314 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| || |
|
|
| T |
7387493 |
atacatatcttttcacatgcaaataactctgatttttttgaaacttcacatgaatgtattaggtctcacctgattatttattaaataaatgacactcgta |
7387592 |
T |
|
| Q |
315 |
ctatcacaatgtaattgaactccaacttgctcaacacccaatcccctctctaatcatgtaaaatgtaagatctctttgacaaccttaattactactatgt |
414 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||| ||||||||||||||||| |||| |||||| |
|
|
| T |
7387593 |
ctacgacaatgtaattgaactccaacttgctcaacacccagttccctctctaatcatgtaaactgtaagacctctttgacaaccttaactactgctatgt |
7387692 |
T |
|
| Q |
415 |
actactcttcaatttcagacattgccactatgaattgatcaaatgattttcaacaaatagatcctttagcatatcacaagcatagtctgaatcaatatat |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7387693 |
actactcttcaatttcagacattgccactatgaattgaccaaatgattttcaacaaatagatcctttagcatatcacaagcatagtctgaatcaatatat |
7387792 |
T |
|
| Q |
515 |
catacaacagaaggatcattttgtccacttaaatatgatacaatgactgttgtcagaggcagatccaatttgtggccatgtgtagctaaaaccacatatc |
614 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7387793 |
cctacaacagaaggatcattttgtccacttaaatatgatacaatgactgttgtcagaggcagatccaatttgtggccatgtgtggctaaaaccacatatc |
7387892 |
T |
|
| Q |
615 |
cattccctaaag |
626 |
Q |
| |
|
|||||||||||| |
|
|
| T |
7387893 |
cattccctaaag |
7387904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 9726352 - 9726405
Alignment:
| Q |
159 |
cttgaacttgtcattggtgattgacttggtcaaacatatcaattgcattctctaa |
213 |
Q |
| |
|
||||||||||||| || ||| |||||||||| ||||||||| ||||||||||||| |
|
|
| T |
9726352 |
cttgaacttgtcactgatgactgacttggtc-aacatatcagttgcattctctaa |
9726405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 32492063 - 32492106
Alignment:
| Q |
159 |
cttgaacttgtcattggtgattgacttggtcaaacatatcaattg |
203 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
32492063 |
cttgaacttgtcatttgtgattgacttggtc-aacatatcaattg |
32492106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 297 - 356
Target Start/End: Complemental strand, 32985493 - 32985434
Alignment:
| Q |
297 |
aaataaatgacactcttactatcacaatgtaattgaactccaacttgctcaacacccaat |
356 |
Q |
| |
|
|||||||||||||||| |||||||||||| || |||||| ||||||||||||||||| |
|
|
| T |
32985493 |
aaataaatgacactctgactatcacaatgcaaccagactccaccttgctcaacacccaat |
32985434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University