View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8426_high_5 (Length: 442)

Name: NF8426_high_5
Description: NF8426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8426_high_5
NF8426_high_5
[»] chr8 (1 HSPs)
chr8 (17-440)||(39853919-39854341)
[»] chr4 (3 HSPs)
chr4 (213-402)||(21955701-21955890)
chr4 (39-106)||(11189318-11189386)
chr4 (34-114)||(20274761-20274842)
[»] chr2 (3 HSPs)
chr2 (18-160)||(26028681-26028824)
chr2 (18-114)||(30200269-30200366)
chr2 (178-297)||(30200457-30200577)
[»] scaffold0002 (2 HSPs)
scaffold0002 (18-114)||(466105-466202)
scaffold0002 (178-297)||(466293-466413)
[»] chr5 (2 HSPs)
chr5 (18-114)||(35896718-35896815)
chr5 (178-297)||(35896507-35896627)
[»] chr3 (4 HSPs)
chr3 (18-114)||(52055514-52055611)
chr3 (18-114)||(53575124-53575221)
chr3 (178-297)||(52055702-52055822)
chr3 (178-297)||(53575312-53575432)
[»] chr1 (3 HSPs)
chr1 (18-114)||(31354256-31354353)
chr1 (18-114)||(16991543-16991640)
chr1 (178-297)||(31354045-31354165)
[»] chr7 (1 HSPs)
chr7 (18-154)||(6638946-6639083)


Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 17 - 440
Target Start/End: Original strand, 39853919 - 39854341
Alignment:
Q  17 catcagtaaaaactatctgaggcattttttgtttatgtgcctctaaaatgtctcaaatagccacttgtaagactcaactgtttcatcatataataatgtt 116  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39853919 catcagtaaaaactatttgaggcattttttgtttatgtgcctctaaaatgtctcaaatagccacttgtaagactcaactgtttcatcatataataatgtt 39854018  T
Q  117 gccccagatatgattgcttttcgatgatggttaaatcctgaaaatattgccaggggtctaccaagagaagctacatc-ccaaaataattgtaaccaatta 215  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| | |||||||||    
T  39854019 gccccaaatatgattgcttttcaatgatggttaaatcctgaaaatactgccaggggtctaccaagagaagctacatcgccaaaataatcgcaaccaatta 39854118  T
Q  216 tcatccttgcatctgcccagtacacatttgtaatttgatcttcaacctcgagttgacaggcatggtatgtagttggattttcacctgaccttctctgaaa 315  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||| ||||||||||    
T  39854119 tcatccttgcatctgcccagaacacatttgtaatttgatcttcaacctcgagttgataggcatggtatgaagttggattttcacccgactttctctgaaa 39854218  T
Q  316 gtattacaaaagataaccaactttcccatttatcatactcatttgtcttctatttcgaagatgagtctgttgatcaacgcgggtaaactccaggttagtt 415  Q
     |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  39854219 ctattgcaaaagataaccaacttccccatttatcatactcatttgtcttctatttcgaagatgagtctgttgatcaacgcgggtaaactccaagttagtt 39854318  T
Q  416 ctacatatcccatttctttactcat 440  Q
    ||||  |||||| ||||||||||||    
T  39854319 ctac--atcccacttctttactcat 39854341  T

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Target: chr4 (Bit Score: 98; Significance: 4e-48; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 213 - 402
Target Start/End: Complemental strand, 21955890 - 21955701
Alignment:
Q  213 ttatcatccttgcatctgcccagtacacatttgtaatttgatcttcaacctcgagttgacaggcatggtatgtagttggattttcacctgaccttctctg 312  Q
    |||||||||||||||||||| |  |||||||||  |||||||||||||| || ||||||||||||||||||| ||||||||||||| | ||  || ||||    
T  21955890 ttatcatccttgcatctgcctaaaacacatttgctatttgatcttcaacatctagttgacaggcatggtatgaagttggattttcaaccgattttgtctg 21955791  T
Q  313 aaagtattacaaaagataaccaactttcccatttatcatactcatttgtcttctatttcgaagatgagtctgttgatcaacgcgggtaaa 402  Q
    |||||||| |||||||||||||||||| ||||||| || |||| ||| ||||||||||||||||||| ||| |||||||| | |||||||    
T  21955790 aaagtattgcaaaagataaccaacttttccatttagcaaactcttttatcttctatttcgaagatgaatcttttgatcaatgtgggtaaa 21955701  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 11189386 - 11189318
Alignment:
Q  39 cattttttgtttatgtgcctctaaaa-tgtctcaaatagccacttgtaagactcaactgtttcatcata 106  Q
    ||||||||||| |||||||||||||| ||||||||| ||||||||||| || ||| |||||||||||||    
T  11189386 cattttttgttgatgtgcctctaaaaatgtctcaaagagccacttgtatgattcagctgtttcatcata 11189318  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 114
Target Start/End: Complemental strand, 20274842 - 20274761
Alignment:
Q  34 tgaggcattttttgtttatgtgcctcta-aaatgtctcaaatagccacttgtaagactcaactgtttcatcatataataatg 114  Q
    ||||||||||| || |||||||| |||| |||||||||||| |||||||  || |||||| | ||||| |||||||||||||    
T  20274842 tgaggcattttctgcttatgtgcttctagaaatgtctcaaagagccactcatatgactcagcagtttcgtcatataataatg 20274761  T

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Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 160
Target Start/End: Original strand, 26028681 - 26028824
Alignment:
Q  18 atcagtaaaaactatctgaggcattttttgtttatgtgcctctaaaa-tgtctcaaatagccacttgtaagactcaactgtttcatcatataataatgtt 116  Q
    ||||||||||||  | ||||||||||| ||||| ||||||||||||| ||||||||| ||||||||||| |||||   ||||||||||||||||||||      
T  26028681 atcagtaaaaacagtttgaggcattttctgtttgtgtgcctctaaaaatgtctcaaaaagccacttgtatgactcttttgtttcatcatataataatgca 26028780  T
Q  117 gccccagatatgattgcttttcgatgatggttaaatcctgaaaa 160  Q
    |||||| | || | || ||| ||||| |||||||||||||||||    
T  26028781 gccccaaagatcactgttttacgatggtggttaaatcctgaaaa 26028824  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 30200269 - 30200366
Alignment:
Q  18 atcagtaaaaactatctgaggcattttttgtttatgtgcctcta-aaatgtctcaaatagccacttgtaagactcaactgtttcatcatataataatg 114  Q
    ||||||||||||| | ||||||||||| || |||||||| |||| |||||||||||||||||||| ||| |||||  | ||||| |||||||||||||    
T  30200269 atcagtaaaaactgtttgaggcattttctgcttatgtgcttctagaaatgtctcaaatagccactcgtatgactcggcagtttcgtcatataataatg 30200366  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 297
Target Start/End: Original strand, 30200457 - 30200577
Alignment:
Q  178 caagagaagctacatc-ccaaaataattgtaaccaattatcatccttgcatctgcccagtacacatttgtaatttgatcttcaacctcgagttgacaggc 276  Q
    |||||||| | ||||| ||||||||| ||||| |||  | |||||| |||||||||||  ||||||| || |||||||||||||  || || ||| | ||    
T  30200457 caagagaaacaacatcaccaaaataactgtaatcaaccagcatcctagcatctgcccaaaacacattggtgatttgatcttcaatatctagctgataagc 30200556  T
Q  277 atggtatgtagttggattttc 297  Q
    ||||||   ||||||||||||    
T  30200557 atggtagaaagttggattttc 30200577  T

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Target: scaffold0002 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 466105 - 466202
Alignment:
Q  18 atcagtaaaaactatctgaggcattttttgtttatgtgcctcta-aaatgtctcaaatagccacttgtaagactcaactgtttcatcatataataatg 114  Q
    ||||||||||||| | ||||||||||| || |||||||| |||| |||||||||||||||||||| ||| |||||| | ||||| |||||||||||||    
T  466105 atcagtaaaaactgtttgaggcattttctgcttatgtgcttctagaaatgtctcaaatagccactcgtatgactcagcagtttcgtcatataataatg 466202  T

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Target: scaffold0002; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 297
Target Start/End: Original strand, 466293 - 466413
Alignment:
Q  178 caagagaagctacatc-ccaaaataattgtaaccaattatcatccttgcatctgcccagtacacatttgtaatttgatcttcaacctcgagttgacaggc 276  Q
    |||||||| | ||||| ||||||||| ||||| |||  | |||||| |||||||||||  ||||||| || |||||||||||||  || || ||| | ||    
T  466293 caagagaaacaacatcaccaaaataactgtaatcaaccagcatcctagcatctgcccaaaacacattggtgatttgatcttcaatatctagctgataagc 466392  T
Q  277 atggtatgtagttggattttc 297  Q
    ||||||   ||||||||||||    
T  466393 atggtagaaagttggattttc 466413  T

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Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 35896815 - 35896718
Alignment:
Q  18 atcagtaaaaactatctgaggcattttttgtttatgtgcctcta-aaatgtctcaaatagccacttgtaagactcaactgtttcatcatataataatg 114  Q
    ||||||||||||| | ||||||||||| || |||||||| |||| |||||||||||||||||||| ||| |||||| | ||||| |||||||||||||    
T  35896815 atcagtaaaaactgtttgaggcattttctgcttatgtgcttctagaaatgtctcaaatagccactcgtatgactcagcagtttcgtcatataataatg 35896718  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 297
Target Start/End: Complemental strand, 35896627 - 35896507
Alignment:
Q  178 caagagaagctacatc-ccaaaataattgtaaccaattatcatccttgcatctgcccagtacacatttgtaatttgatcttcaacctcgagttgacaggc 276  Q
    |||||||| | ||||| ||||||||| ||||| |||  | |||||| |||||||||||  ||||||| || |||||||||||||  || || ||| | ||    
T  35896627 caagagaaacaacatcaccaaaataactgtaatcaaccagcatcctagcatctgcccaaaacacattggtgatttgatcttcaatatctagctgataagc 35896528  T
Q  277 atggtatgtagttggattttc 297  Q
    ||||||   ||||||||||||    
T  35896527 atggtagaaagttggattttc 35896507  T

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Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 52055514 - 52055611
Alignment:
Q  18 atcagtaaaaactatctgaggcattttttgtttatgtgcctcta-aaatgtctcaaatagccacttgtaagactcaactgtttcatcatataataatg 114  Q
    ||||||||||||| | ||||||||||| || |||||||| |||| |||||||||||||||||||| ||| |||||| | ||||| |||||||||||||    
T  52055514 atcagtaaaaactgtttgaggcattttctgcttatgtgcttctagaaatgtctcaaatagccactcgtatgactcagcagtttcgtcatataataatg 52055611  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 53575124 - 53575221
Alignment:
Q  18 atcagtaaaaactatctgaggcattttttgtttatgtgcctcta-aaatgtctcaaatagccacttgtaagactcaactgtttcatcatataataatg 114  Q
    ||||||||||||| | ||||||||||| || |||||||| |||| |||||||||||||||||||| ||| |||||  | ||||| |||||||||||||    
T  53575124 atcagtaaaaactgtttgaggcattttctgcttatgtgcttctagaaatgtctcaaatagccactcgtatgactcggcagtttcgtcatataataatg 53575221  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 297
Target Start/End: Original strand, 52055702 - 52055822
Alignment:
Q  178 caagagaagctacatc-ccaaaataattgtaaccaattatcatccttgcatctgcccagtacacatttgtaatttgatcttcaacctcgagttgacaggc 276  Q
    |||||||| | ||||| ||||||||| ||||| |||  | |||||| |||||||||||  ||||||| || |||||||||||||  || || ||| | ||    
T  52055702 caagagaaacaacatcaccaaaataactgtaatcaaccagcatcctagcatctgcccaaaacacattggtgatttgatcttcaatatctagctgataagc 52055801  T
Q  277 atggtatgtagttggattttc 297  Q
    ||||||   ||||||||||||    
T  52055802 atggtagaaagttggattttc 52055822  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 297
Target Start/End: Original strand, 53575312 - 53575432
Alignment:
Q  178 caagagaagctacatc-ccaaaataattgtaaccaattatcatccttgcatctgcccagtacacatttgtaatttgatcttcaacctcgagttgacaggc 276  Q
    |||||||| | ||||| ||||||||| ||||| |||  | |||||| |||||||||||  ||||||| || |||||||||||||  || || ||| | ||    
T  53575312 caagagaaacaacatcaccaaaataactgtaatcaaccagcatcctagcatctgcccaaaacacattggtgatttgatcttcaatatctagctgataagc 53575411  T
Q  277 atggtatgtagttggattttc 297  Q
    ||||||   ||||||||||||    
T  53575412 atggtagaaagttggattttc 53575432  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 31354353 - 31354256
Alignment:
Q  18 atcagtaaaaactatctgaggcattttttgtttatgtgcctcta-aaatgtctcaaatagccacttgtaagactcaactgtttcatcatataataatg 114  Q
    ||||||||||||| | ||||||||||| || |||||||| |||| |||||||||||||||||||| ||| |||||| | ||||| |||||||||||||    
T  31354353 atcagtaaaaactgtttgaggcattttctgcttatgtgcttctagaaatgtctcaaatagccactcgtatgactcagcagtttcgtcatataataatg 31354256  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 16991640 - 16991543
Alignment:
Q  18 atcagtaaaaactatctgaggcattttttgtttatgtgcctcta-aaatgtctcaaatagccacttgtaagactcaactgtttcatcatataataatg 114  Q
    ||||||||||||| | ||||||||||| || |||||||| |||| |||||||||||| ||||||| ||| |||||| | ||||| |||||||||||||    
T  16991640 atcagtaaaaactgtttgaggcattttctgcttatgtgcttctagaaatgtctcaaagagccactcgtatgactcagcagtttcgtcatataataatg 16991543  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 297
Target Start/End: Complemental strand, 31354165 - 31354045
Alignment:
Q  178 caagagaagctacatc-ccaaaataattgtaaccaattatcatccttgcatctgcccagtacacatttgtaatttgatcttcaacctcgagttgacaggc 276  Q
    |||||||| | ||||| ||||||||| ||||| |||  | |||||| |||||||||||  ||||||| || |||||||||||||  || || ||| | ||    
T  31354165 caagagaaacaacatcaccaaaataactgtaatcaaccagcatcctagcatctgcccaaaacacattggtgatttgatcttcaatatctagctgataagc 31354066  T
Q  277 atggtatgtagttggattttc 297  Q
    ||||||   ||||||||||||    
T  31354065 atggtagaaagttggattttc 31354045  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 154
Target Start/End: Complemental strand, 6639083 - 6638946
Alignment:
Q  18 atcagtaaaaactatctgaggcattttttgtttatgtgcctct-aaaatgtctcaaatagccacttgtaagactcaactgtttcatcatataataatgtt 116  Q
    ||||||||||||| | ||||||||||| || ||||| |||||| ||||||||||| | ||||| ||||||| ||||  |||||| ||||| || ||||      
T  6639083 atcagtaaaaactgtttgaggcattttctgcttatgagcctctaaaaatgtctcagagagccatttgtaagtctcagatgtttcgtcatacaacaatgca 6638984  T
Q  117 gccccagatatgattgcttttcgatgatggttaaatcc 154  Q
    |||||| | || | ||||  |||||| |||||||||||    
T  6638983 gccccaaaaatcactgctcctcgatggtggttaaatcc 6638946  T

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