View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8426_high_6 (Length: 412)
Name: NF8426_high_6
Description: NF8426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8426_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 26656821 - 26657174
Alignment:
| Q |
1 |
cttaataggtttcaacatggtgtgccaaaattctgtggaagtttgtgtgtcctttatgcttttattatggtgttgtatttggttagacaagagtgtcctc |
100 |
Q |
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| T |
26656821 |
cttaataggtttcaacatggtgtgccaaaattctgtggaagtttgtgtgtcctttatgcttttattatggtgttgtatttggttagacaagagtgtcctc |
26656920 |
T |
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| Q |
101 |
ctggcttgaccttgaaagcagcttttcttaaattttgctatgtcatagtaatgtgtttatagcttctatcttggacaatactcatagctgtcataagagt |
200 |
Q |
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| T |
26656921 |
ctggcttgaccttgaaagcagcttttcttaaattttgccatgtcatagtaatgtgtttatagcttctatcttggacaatactcatagctgtcataagagt |
26657020 |
T |
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| Q |
201 |
gtttccatttattgaaggttaatatgctggaaagccttgttagttacattattgg----ttctctctatctccttgttcttttgctgtttctgttccatt |
296 |
Q |
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| T |
26657021 |
gtttccatttattgaaggttaatatgctggaaagccttgttagttacattattggttctttctctctatctccttgttcttttgctgtttctgttctatt |
26657120 |
T |
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| Q |
297 |
aatctttttcttgacatatcattttccattcctcggatgttatttactgctcta |
350 |
Q |
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| T |
26657121 |
aatctttttcttgacatatcattttccattcctcggatgttatttactgctcta |
26657174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 45 - 172
Target Start/End: Original strand, 26643413 - 26643537
Alignment:
| Q |
45 |
gtgtgtcctttatgcttttattatggtgttgtatttggttagacaagagtgtcctcctggcttgaccttgaaagcagcttttcttaaattttgctatgtc |
144 |
Q |
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| T |
26643413 |
gtgtgtcctttttgcttttattatggtgttgtatttggttagaccagaaa-tcc--ctggcttgaccttcaaagcatcttttcttagattatgctatgta |
26643509 |
T |
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| Q |
145 |
atagtaatgtgtttatagcttctatctt |
172 |
Q |
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|| ||||| ||||||||||||||||||| |
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| T |
26643510 |
attgtaatctgtttatagcttctatctt |
26643537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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