View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8426_low_11 (Length: 285)
Name: NF8426_low_11
Description: NF8426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8426_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 32 - 264
Target Start/End: Complemental strand, 2007401 - 2007166
Alignment:
| Q |
32 |
attctatgggtatgatataaaggaaacaannnnnnnnatagggatataaaaaactacattgatcaaaattgttatcattgtatattagttattagcagtg |
131 |
Q |
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| T |
2007401 |
attctatgggaatgatataaaggaaacaattttttttataggaatataaaaaactacattaatcaaaattgttatcattgtatattagttattagcagtg |
2007302 |
T |
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| Q |
132 |
attttatcttattatcttattgttgattttgtaaaagcacaagtcatttttaagattgacggttgtctccacat---actaatacaagccttttctttaa |
228 |
Q |
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| T |
2007301 |
attttatcttattatcttattgttaattttgtaaaagcacaagtcatttttaagattgacggttgtctccacatactactaatacaagccttttctttaa |
2007202 |
T |
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| Q |
229 |
catattttgtagtcactcatactttctagaagaaga |
264 |
Q |
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| T |
2007201 |
catattttgtagtcactcatactttctagaagaaga |
2007166 |
T |
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