View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8426_low_14 (Length: 257)
Name: NF8426_low_14
Description: NF8426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8426_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 64100 - 64341
Alignment:
| Q |
1 |
tggattgtttctagatttgtaagagaccataatcatgtagtattttccccaagaagttcacaacatcttcgagtacatagaaagaaaatcccagtgcnnn |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
64100 |
tggattgtttctagatttgtaagagaccataatcatgtactattttcccgaagaagttcacaacatcttcgagtacatagaaagaaaaccccagtgcaaa |
64199 |
T |
|
| Q |
101 |
nnnnn-cttattgatgtgcttcatgattctggtataggccctagtaaaatagcatcagtgttatgtaccgagagtggtggtgttgataatgttggattta |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||| |
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| T |
64200 |
aaaaaacttattgatgtgcttcatgattctggtataggccctagtaaaatagcatcagtgttatgtactgagagtggcggtgttgagaatgttggattta |
64299 |
T |
|
| Q |
200 |
gccaacaagatgttattaattatttaagtgtaaagagacaaa |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
64300 |
gccaacaagatgttattaattatttaagtgtaaagagacaaa |
64341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 28 - 241
Target Start/End: Original strand, 51166116 - 51166335
Alignment:
| Q |
28 |
cataatcatgtagtattttccccaagaagttcacaacatcttcgagtacatagaaagaaaatcccagtgcnnnnnnnn------cttattgatgtgcttc |
121 |
Q |
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| T |
51166116 |
cataatcatgtactattttccccaagaagttcacaacatcttcgagtacatagaaagaaaaccccagtgcaaaaaaaaaaaaaacttattgatgtgcttc |
51166215 |
T |
|
| Q |
122 |
atgattctggtataggccctagtaaaatagcatcagtgttatgtaccgagagtggtggtgttgataatgttggatttagccaacaagatgttattaatta |
221 |
Q |
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| T |
51166216 |
atgattctggtataggccctagtaaaatagcatcagtgttatgtactgagagtggtggtgttgataatgttggatttagccaacaagatgttattaatta |
51166315 |
T |
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| Q |
222 |
tttaagtgtaaagagacaaa |
241 |
Q |
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|||||||||||||||||||| |
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| T |
51166316 |
tttaagtgtaaagagacaaa |
51166335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 16080462 - 16080702
Alignment:
| Q |
1 |
tggattgtttctagatttgtaagagaccataatcatgtagtattttccccaagaagttcacaacatcttcgagtacatagaaagaaaatcccagtgcnnn |
100 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||| | |||||||||||| |||||||| |||| |||||||||||| |||| | ||||| |
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| T |
16080462 |
tggactgtttctagatttgtaagagaccataatcatgaactattttccccaaacagttcacactttcttagagtacatagaagcaaaaccaaagtgcaaa |
16080561 |
T |
|
| Q |
101 |
nnnnncttattgatgtgcttcatgattctggtataggccctagtaaaatagcatcagtgttatgtaccgagagtggtggtgttgataatgttggatttag |
200 |
Q |
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| T |
16080562 |
aaaaacttattgatgtgcttgatgattctggtataggccctagtaaaatagcatcagtgttatgtaaagagagtggtggtgttgataatgttggatttag |
16080661 |
T |
|
| Q |
201 |
ccaacaagatgttattaattatttaagtgtaaagagacaaa |
241 |
Q |
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|||||||||||||||||||||||||| ||| |||||||||| |
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| T |
16080662 |
ccaacaagatgttattaattatttaactgtgaagagacaaa |
16080702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 48772564 - 48772804
Alignment:
| Q |
1 |
tggattgtttctagatttgtaagagaccataatcatgtagtattttccccaagaagttcacaacatcttcgagtacatagaaagaaaatcccagtgcnnn |
100 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||| | ||||||||| || |||||||| |||| |||||||||||| |||| | ||||| |
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| T |
48772564 |
tggattgtttttagatttgttagagaccataatcatgaactattttccctaaacagttcacagtttcttagagtacatagaagcaaaaccaaagtgcaaa |
48772663 |
T |
|
| Q |
101 |
nnnnncttattgatgtgcttcatgattctggtataggccctagtaaaatagcatcagtgttatgtaccgagagtggtggtgttgataatgttggatttag |
200 |
Q |
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| T |
48772664 |
aaaaacttattgatgtgcttgatgattctggtataggccctagtaaaatagcatcagtgttatgtatcgagagtggtggtgttgataatgttggatttag |
48772763 |
T |
|
| Q |
201 |
ccaacaagatgttattaattatttaagtgtaaagagacaaa |
241 |
Q |
| |
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|||||||||||||||||||||||||| ||| |||||||||| |
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| T |
48772764 |
ccaacaagatgttattaattatttaactgtgaagagacaaa |
48772804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 44885940 - 44885706
Alignment:
| Q |
1 |
tggattgtttctagatttgtaagagaccataatcatgtagtattttccccaagaagttcacaacatcttcgagtacatagaaagaaaatcccagtgcnnn |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| | ||||| || |||||| |||| |||||| |||||||||||||||| ||||| |
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| T |
44885940 |
tggattgtttctagatttgtaagcgaccataatcaccagctgttttctcctagaagtgcacagtctcttcgcgtacatagaaagaaaactaaagtgcaaa |
44885841 |
T |
|
| Q |
101 |
nnnnncttattgatgtgcttcatgattctggtataggccctagtaaaatagcatcagtgttatgtaccgagagtggtggtgttgataatgttggatttag |
200 |
Q |
| |
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|||| |||||||||| |||| |||||| ||||| |||| | |||| | ||||| || || ||||| ||| |||||||| |||||| ||| |
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| T |
44885840 |
agacacttactgatgtgcttgatgaatctggtttaggc------aaaacaacatctatcttatgcactgaaagtggcggtattgataattttggatctag |
44885747 |
T |
|
| Q |
201 |
ccaacaagatgttattaattatttaagtgtaaagagacaaa |
241 |
Q |
| |
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|||||||||||||| ||||| ||||||||| ||||||||| |
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| T |
44885746 |
tcaacaagatgttatcaattacttaagtgtacagagacaaa |
44885706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 19329241 - 19329315
Alignment:
| Q |
8 |
tttctagatttgtaagagaccataatcatgtagtattttccccaagaagttcacaacatcttcgagtacatagaa |
82 |
Q |
| |
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|||||||||||| ||||||| | ||||||| | |||||||||||| || |||||| ||||||||| ||||||| |
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| T |
19329241 |
tttctagatttgaaagagacaacaatcatgaactattttccccaataatttcacattttcttcgagtgcatagaa |
19329315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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