View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8426_low_19 (Length: 206)

Name: NF8426_low_19
Description: NF8426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8426_low_19
NF8426_low_19
[»] chr8 (5 HSPs)
chr8 (19-189)||(7258146-7258317)
chr8 (64-126)||(29510588-29510650)
chr8 (9-55)||(43844670-43844716)
chr8 (72-137)||(12783256-12783321)
chr8 (63-111)||(41291638-41291686)
[»] chr3 (2 HSPs)
chr3 (64-132)||(44437995-44438063)
chr3 (64-120)||(36232789-36232845)
[»] chr6 (1 HSPs)
chr6 (9-53)||(34703749-34703793)
[»] chr2 (1 HSPs)
chr2 (9-53)||(27001707-27001751)
[»] chr1 (1 HSPs)
chr1 (9-52)||(34814064-34814107)


Alignment Details
Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 7258317 - 7258146
Alignment:
Q  19 caaaaaactcacttaaattgggacggagggagtattgaagagagtattttctgcacttttaaatacttgattacataagttctaagaaattctcattata 118  Q
    |||| |||||| |||||||| |||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||| |||||||||  ||||||    
T  7258317 caaagaactcagttaaattgcgacggagggagtattgaagtcagtattttctccacttttaaatacttgattacataagttccaagaaattcctattata 7258218  T
Q  119 cttatttctttaaccagtac-tcagagacattggttagcattttcgttaaaatatatatatgtcatcaatct 189  Q
    |||||||| ||||| ||| | |||||||||   |||||||||||| ||||||||||||||||||||||||||    
T  7258217 cttatttccttaactagtccttcagagacacatgttagcattttccttaaaatatatatatgtcatcaatct 7258146  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 29510650 - 29510588
Alignment:
Q  64 attttctgcacttttaaatacttgattacataagttctaagaaattctcattatacttatttc 126  Q
    ||||||| |||||||||||| ||||||||| |||||| |||||||| | | ||||||| ||||    
T  29510650 attttctacacttttaaatatttgattacacaagttccaagaaatttttactatacttgtttc 29510588  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 43844716 - 43844670
Alignment:
Q  9 gtgagatgaacaaaaaactcacttaaattgggacggagggagtattg 55  Q
    |||| |||| ||||||||||| ||||| |||||||||||||||||||    
T  43844716 gtgaaatgatcaaaaaactcaattaaaatgggacggagggagtattg 43844670  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 72 - 137
Target Start/End: Complemental strand, 12783321 - 12783256
Alignment:
Q  72 cacttttaaatacttgattacataagttctaagaaattctcattatacttatttctttaaccagta 137  Q
    |||||||||||| |||||||||||| |||||||| ||| | | |||| || |||||||||| ||||    
T  12783321 cacttttaaatatttgattacataaattctaagagattatgaatataattgtttctttaactagta 12783256  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 41291686 - 41291638
Alignment:
Q  63 tattttctgcacttttaaatacttgattacataagttctaagaaattct 111  Q
    |||||||| || |||| |||||||||||||| ||||| |||||||||||    
T  41291686 tattttctacattttttaatacttgattacacaagttttaagaaattct 41291638  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 132
Target Start/End: Original strand, 44437995 - 44438063
Alignment:
Q  64 attttctgcacttttaaatacttgattacataagttctaagaaattctcattatacttatttctttaac 132  Q
    ||||||| |||||||||||| ||||||||| |||||| |||||||||| | ||||||| |||| |||||    
T  44437995 attttctacacttttaaatatttgattacacaagttccaagaaattcttactatacttgtttccttaac 44438063  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 120
Target Start/End: Complemental strand, 36232845 - 36232789
Alignment:
Q  64 attttctgcacttttaaatacttgattacataagttctaagaaattctcattatact 120  Q
    |||||||  ||||||||||||||||||| | ||||| ||||||||||| ||||||||    
T  36232845 attttctatacttttaaatacttgattaaacaagttttaagaaattcttattatact 36232789  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 34703749 - 34703793
Alignment:
Q  9 gtgagatgaacaaaaaactcacttaaattgggacggagggagtat 53  Q
    |||| ||||||||||  ||||||||||||||||||||||||||||    
T  34703749 gtgaaatgaacaaaatgctcacttaaattgggacggagggagtat 34703793  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 27001707 - 27001751
Alignment:
Q  9 gtgagatgaacaaaaaactcacttaaattgggacggagggagtat 53  Q
    |||| ||||||||||  ||||||||||||||||||||||||||||    
T  27001707 gtgaaatgaacaaaatgctcacttaaattgggacggagggagtat 27001751  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 34814064 - 34814107
Alignment:
Q  9 gtgagatgaacaaaaaactcacttaaattgggacggagggagta 52  Q
    |||| |||| ||||||| ||||||||||||||||||||||||||    
T  34814064 gtgaaatgagcaaaaaattcacttaaattgggacggagggagta 34814107  T

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