View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8426_low_3 (Length: 586)
Name: NF8426_low_3
Description: NF8426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8426_low_3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 558; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 1 - 586
Target Start/End: Original strand, 4243255 - 4243840
Alignment:
| Q |
1 |
accatgccttggatacgtaatcttccttctcacaaaccctcaactcctatgccggctcatcatgaagaccttacagtgaattacttgttgaatctggaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4243255 |
accatgccttggatacgtaatcttccttctcacaaaccctcaactcctatgccggctcatcatgaagaccttacagtgaattacttgttgaatctggaag |
4243354 |
T |
|
| Q |
101 |
gcctcacttggaaccaacagatagttacatccattttcaatccccaagacgctgctactatactctccatccctctacataaccgtctgttgtctgacac |
200 |
Q |
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| T |
4243355 |
gcctctcttggaaccaacaaatagttacatccattttcaatccccaagacgctgctgctatactctccatccctctacataaccgtctgttgtctgacac |
4243454 |
T |
|
| Q |
201 |
cagaatatggaaaacaacaacaactggtaattatacggttaagtcggcataccgcatttgtagtgatctactccaccctcatgattctgcccacaataat |
300 |
Q |
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| T |
4243455 |
cagaatatggaaaacaacaacaactggtaattatacggttaagtcggcataccgcatttgtagtgatctactccaccctcatgattctgcccacaataat |
4243554 |
T |
|
| Q |
301 |
tcttcatggatgaatatctggtatctcaatattcctcaccgtgtccgagcctttctatggcgtttagctcatcattgcttgcccactcgtgtcaatctta |
400 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4243555 |
tcttcatggatgaatatctggaatctcaatattcctcaccgtgtccgagcctttctatggcgtttagctcataattgcttgcccactcgtgtcaatctta |
4243654 |
T |
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| Q |
401 |
atgcaagaggaattcagtgcgaggaatcatgtgttatgtgtgaaaattttgcggaatgccacactcatctcttctttgtttgcgcaaaagccatggattg |
500 |
Q |
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| T |
4243655 |
atgcaagaggaatccagtgcgaggaatcatgtgttatgtttgaaaattttgcggaatgccacactcatctcttctttgtttgcgcaaaagccatggattg |
4243754 |
T |
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| Q |
501 |
ttggaagaatattggcttacatgttgtgttaagtgagctgctgcctcttgctaacaactttactacattgttgtttgactttatgc |
586 |
Q |
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| T |
4243755 |
ttggaagaatattggcttacatgttgtgttaagtgagctgctgcctcttgctaacaactttactacattgttgtttgactttatgc |
4243840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 256 - 583
Target Start/End: Complemental strand, 33496066 - 33495739
Alignment:
| Q |
256 |
atttgtagtgatctactccaccctcatgattctgcccacaataattcttcatggatgaatatctggtatctcaatattcctcaccgtgtccgagcctttc |
355 |
Q |
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| T |
33496066 |
atttgtattgatctactccaccctcatgattctgcccacaataattctctttggatgaatatctggactctcgatattcctcaccgtgttcgagccttta |
33495967 |
T |
|
| Q |
356 |
tatggcgtttagctcatcattgcttgcccactcgtgtcaatcttaatgcaagaggaattcagtgcgaggaatcatgtgttatgtgtgaaaattttgcgga |
455 |
Q |
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| T |
33495966 |
tgtggcatttagctcatcatttcttgcccacccgtgtcaatcttaatgtaagaggaattcagtgcgaggaatcatgcgttatgtgtgaaacttttgcgga |
33495867 |
T |
|
| Q |
456 |
atgccacactcatctcttctttgtttgcgcaaaagccatggattgttggaagaatattggcttacatgttgtgttaagtgagctgctgcctcttgctaac |
555 |
Q |
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| T |
33495866 |
atcccacattaatctcttctttgtttgtgcaaaagccatggattgttggaagaatattggcttatatgatgtgttaagtgagcttctccctcttgctaac |
33495767 |
T |
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| Q |
556 |
aactttactacattgttgtttgacttta |
583 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
33495766 |
aactttactacattgttgtttgacttta |
33495739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 33496291 - 33496080
Alignment:
| Q |
1 |
accatgccttggatacgtaatcttccttctcacaaaccctcaactcctatgccggctcatcatgaagaccttacagtgaattacttgttgaatctggaag |
100 |
Q |
| |
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|||||||| || |||||||||||| ||||||||||||| ||||||||||||||| ||| ||||||||| |||||||||||||||||| |||||| ||||| |
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| T |
33496291 |
accatgccatgaatacgtaatctttcttctcacaaaccttcaactcctatgccgtctcttcatgaagatcttacagtgaattacttgctgaatc-ggaag |
33496193 |
T |
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| Q |
101 |
gcctcacttggaaccaacagatagttacatccattttcaatccccaagacgctgctactatactctccatccctctacataaccgtctgttgtctgacac |
200 |
Q |
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| T |
33496192 |
gcctctcttggaaccaatagatagttacatccattttcaatccccaagacgatgctgctatactctccatccctctccataaccgtctgttgtttgacac |
33496093 |
T |
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| Q |
201 |
cagaatatggaaa |
213 |
Q |
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||||||||||||| |
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| T |
33496092 |
cagaatatggaaa |
33496080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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