View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8426_low_4 (Length: 473)

Name: NF8426_low_4
Description: NF8426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8426_low_4
NF8426_low_4
[»] chr5 (11 HSPs)
chr5 (65-345)||(40946710-40947014)
chr5 (70-262)||(16352008-16352197)
chr5 (64-160)||(4077837-4077933)
chr5 (1-66)||(21724126-21724191)
chr5 (1-66)||(21803863-21803928)
chr5 (5-66)||(19589548-19589609)
chr5 (187-259)||(4077947-4078018)
chr5 (66-149)||(29344762-29344845)
chr5 (419-459)||(40947087-40947127)
chr5 (65-93)||(30463750-30463778)
chr5 (69-117)||(33553604-33553652)
[»] chr3 (11 HSPs)
chr3 (65-262)||(44712413-44712615)
chr3 (65-137)||(29129130-29129202)
chr3 (65-143)||(52126885-52126963)
chr3 (63-175)||(43399448-43399560)
chr3 (70-137)||(53689246-53689313)
chr3 (4-65)||(15259961-15260022)
chr3 (110-181)||(45640645-45640717)
chr3 (64-137)||(25612613-25612687)
chr3 (62-128)||(19009661-19009727)
chr3 (71-128)||(14459257-14459314)
chr3 (65-98)||(49826492-49826525)
[»] chr6 (8 HSPs)
chr6 (69-238)||(23073331-23073505)
chr6 (65-175)||(18645950-18646060)
chr6 (68-139)||(8840653-8840724)
chr6 (65-128)||(25357557-25357620)
chr6 (69-167)||(20910652-20910750)
chr6 (69-167)||(20925100-20925198)
chr6 (68-137)||(2319907-2319976)
chr6 (111-143)||(34008653-34008685)
[»] chr2 (7 HSPs)
chr2 (64-208)||(26449092-26449241)
chr2 (64-143)||(38403354-38403433)
chr2 (65-138)||(31409703-31409776)
chr2 (63-139)||(22145642-22145718)
chr2 (4-65)||(31140170-31140231)
chr2 (64-123)||(4768477-4768536)
chr2 (70-102)||(1556305-1556337)
[»] chr8 (13 HSPs)
chr8 (64-149)||(38681136-38681221)
chr8 (65-181)||(26955412-26955528)
chr8 (1-66)||(14330655-14330720)
chr8 (63-175)||(8022722-8022834)
chr8 (74-149)||(38682400-38682474)
chr8 (293-345)||(26955692-26955744)
chr8 (110-239)||(30850087-30850222)
chr8 (419-459)||(26955817-26955857)
chr8 (126-178)||(27229298-27229350)
chr8 (65-137)||(29729350-29729421)
chr8 (187-233)||(26955561-26955607)
chr8 (65-123)||(42313948-42314006)
chr8 (63-136)||(765506-765579)
[»] chr7 (11 HSPs)
chr7 (1-66)||(9987269-9987334)
chr7 (65-143)||(24759474-24759552)
chr7 (198-262)||(18941188-18941252)
chr7 (4-66)||(17218614-17218676)
chr7 (69-137)||(1971096-1971164)
chr7 (4-65)||(13937439-13937500)
chr7 (4-65)||(39286470-39286531)
chr7 (65-129)||(11503204-11503268)
chr7 (93-140)||(18941273-18941320)
chr7 (63-137)||(43903418-43903493)
chr7 (63-123)||(13761779-13761839)
[»] chr1 (6 HSPs)
chr1 (65-137)||(29836239-29836311)
chr1 (65-137)||(40981594-40981666)
chr1 (64-137)||(50290432-50290505)
chr1 (65-125)||(50860118-50860178)
chr1 (69-120)||(10011985-10012036)
chr1 (63-93)||(39076266-39076296)
[»] chr4 (21 HSPs)
chr4 (65-138)||(14210418-14210491)
chr4 (65-138)||(14211387-14211460)
chr4 (65-138)||(14212338-14212411)
chr4 (65-138)||(14213307-14213380)
chr4 (65-138)||(14214275-14214348)
chr4 (65-138)||(14215244-14215317)
chr4 (65-138)||(14218115-14218188)
chr4 (65-138)||(14219085-14219158)
chr4 (65-138)||(14220054-14220127)
chr4 (65-138)||(14221005-14221078)
chr4 (65-138)||(14221974-14222047)
chr4 (65-138)||(14222943-14223016)
chr4 (65-176)||(30176040-30176151)
chr4 (65-138)||(14209467-14209540)
chr4 (65-138)||(14216213-14216286)
chr4 (65-138)||(14217164-14217237)
chr4 (69-140)||(11214843-11214913)
chr4 (69-140)||(11225354-11225424)
chr4 (68-123)||(37618987-37619041)
chr4 (65-93)||(1678493-1678521)
chr4 (65-93)||(14586882-14586910)
[»] scaffold0094 (1 HSPs)
scaffold0094 (31-66)||(6634-6669)
[»] scaffold0005 (1 HSPs)
scaffold0005 (65-93)||(230464-230492)


Alignment Details
Target: chr5 (Bit Score: 120; Significance: 3e-61; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 65 - 345
Target Start/End: Original strand, 40946710 - 40947014
Alignment:
Q  65 atcctttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaattttttggctccaaatcgttttggccattaaatgaatctat 164  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| || ||||| ||| || |||||||    
T  40946710 atcctttatatctaatcctagcaaacatgtttaccctaattgccaaaccctaatcttaattttttggctccaaatcattctggccgttagataaatctat 40946809  T
Q  165 gttgatctccacacaat-----tcttcccaataaatattttctttcaattttaagtcagaagtgcatgggtaacgtacactttacacca--atattctcc 257  Q
    ||||||||| |||||||     | || |||||||| |||||||||||||||||| ||| |||||||| |||||||||| ||| | ||||  |||||||||    
T  40946810 gttgatctctacacaatccatctatttccaataaacattttctttcaattttaaatcataagtgcattggtaacgtacgcttcataccaatatattctcc 40946909  T
Q  258 t--------ccacggcagacttcccaa----ttttgtaggtttccca-----tgctactattttcaaacaaaaaactgatacacgttttttaggcttcct 340  Q
    |        |||||||||||||| |||    || |||||||||||||     ||||||||||||||||||||||||||||| |  |||||||||||||||    
T  40946910 tccactttcccacggcagacttctcaacttcttctgtaggtttcccatgtattgctactattttcaaacaaaaaactgatataatttttttaggcttcct 40947009  T
Q  341 tttct 345  Q
    |||||    
T  40947010 tttct 40947014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 70 - 262
Target Start/End: Complemental strand, 16352197 - 16352008
Alignment:
Q  70 ttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaattttttggctccaaatcgttttggccattaaatgaatctatgttga 169  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||| ||||| ||| |||||||||| ||||    
T  16352197 ttatatctaatcctagcaaacatgcttaccctaattgccaaaccctaatccttattttttggctccaaatcgttatggccgttagatgaatctattttga 16352098  T
Q  170 tctccacacaat-----tcttcccaataaatattttctttcaattttaagtcagaagtgcatgggtaacgtacactttacaccaatattctcctccac 262  Q
    ||||| |||| |     |||| |||||||| |  ||||||||||||||||||| ||||       |||| ||||||| ||||||||||||||||||||    
T  16352097 tctccgcacattccatctctttccaataaacaccttctttcaattttaagtcacaagt-------taac-tacacttcacaccaatattctcctccac 16352008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 64 - 160
Target Start/End: Original strand, 4077837 - 4077933
Alignment:
Q  64 tatcctttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaattttttggctccaaatcgttttggccattaaatgaat 160  Q
    |||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||| ||||||||||||||||||||| ||||| ||| ||||||    
T  4077837 tatcctttatatctaatcctagcaaacatgcttatcctaattgccaaaccctaatccttattttttggctccaaatcgttatggccgttagatgaat 4077933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 21724191 - 21724126
Alignment:
Q  1 caagtttttggaaggaattgattgaagagtttgagaaattgattgtgaaattgattttagggttat 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21724191 caagtttttggaaggaattgattgaagagtttgagaaattgattgtgaaattgattttagggttat 21724126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 21803928 - 21803863
Alignment:
Q  1 caagtttttggaaggaattgattgaagagtttgagaaattgattgtgaaattgattttagggttat 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21803928 caagtttttggaaggaattgattgaagagtttgagaaattgattgtgaaattgattttagggttat 21803863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 19589548 - 19589609
Alignment:
Q  5 tttttggaaggaattgattgaagagtttgagaaattgattgtgaaattgattttagggttat 66  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19589548 tttttggaagaaattgattgaagagtttgagaaattgattgtgaaattgattttagggttat 19589609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 4077947 - 4078018
Alignment:
Q  187 ccaataaatattttctttcaattttaagtcagaagtgcatgggtaacgtacactttacaccaatattctcctc 259  Q
    |||||||| | |||||||||||||||||||| |||| ||| |||||| ||||||| |||||||||||||||||    
T  4077947 ccaataaacaatttctttcaattttaagtcacaagttcattggtaac-tacacttcacaccaatattctcctc 4078018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 66 - 149
Target Start/End: Original strand, 29344762 - 29344845
Alignment:
Q  66 tcctttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaattttttggctccaaatcgttttggcc 149  Q
    ||||||||||||||||||||||   |||   ||| |||||| |||||||||||| ||||||||| ||||||||||||| |||||    
T  29344762 tcctttatatctaatcctagcagcaatgcaaaccatatttgtcaaaccctaatcttaattttttagctccaaatcgttctggcc 29344845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 419 - 459
Target Start/End: Original strand, 40947087 - 40947127
Alignment:
Q  419 atggagctttttcacccttctcatctgttacatccattcat 459  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  40947087 atggagctttttcacccttcccatctgttacatccattcat 40947127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 93
Target Start/End: Original strand, 30463750 - 30463778
Alignment:
Q  65 atcctttatatctaatcctagcaaacatg 93  Q
    |||||||||||||||||||||||||||||    
T  30463750 atcctttatatctaatcctagcaaacatg 30463778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 33553604 - 33553652
Alignment:
Q  69 tttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaa 117  Q
    ||||||||||||||||||||| ||| ||| |||| |||||||| |||||    
T  33553604 tttatatctaatcctagcaaatatgcttatcctaattgccaaatcctaa 33553652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 65 - 262
Target Start/End: Complemental strand, 44712615 - 44712413
Alignment:
Q  65 atcctttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaatt-ttttggctccaaatcgttttggccattaaatgaatcta 163  Q
    ||||||||||| ||||||||||||||||||||| |||| || ||||||  ||||||||||| ||||||||||||||| || | | | ||| ||||||| |    
T  44712615 atcctttatatataatcctagcaaacatgtttatcctaattaccaaactttaatcctaatttttttggctccaaatcattatagtcgttagatgaatcca 44712516  T
Q  164 tgttgatctccacacaat-----tcttcccaataaatattttctttcaattttaagtcagaagtgcatgggtaacgtacactttacaccaatattctcct 258  Q
    ||||||||||||||||||     | ||| ||||||||||||| |||||||||||||||| |||||||| |||||||||||||| |||||||||||||| |    
T  44712515 tgttgatctccacacaatccatcttttctcaataaatatttt-tttcaattttaagtcacaagtgcattggtaacgtacacttcacaccaatattctctt 44712417  T
Q  259 ccac 262  Q
    ||||    
T  44712416 ccac 44712413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 65 - 137
Target Start/End: Original strand, 29129130 - 29129202
Alignment:
Q  65 atcctttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaattttttggctccaa 137  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||    
T  29129130 atcctttatatctaatcctagcaaacatgtttaccctaattgccaaaccctaaacctacttttttggctccaa 29129202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 65 - 143
Target Start/End: Original strand, 52126885 - 52126963
Alignment:
Q  65 atcctttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaattttttggctccaaatcgtt 143  Q
    ||||||||||||||||||||||||||||| |||||||| || |  |||||||||||||| |||||||||||||||||||    
T  52126885 atcctttatatctaatcctagcaaacatgcttaccctaatttcttaaccctaatcctaagtttttggctccaaatcgtt 52126963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 63 - 175
Target Start/End: Original strand, 43399448 - 43399560
Alignment:
Q  63 ttatcctttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaattttttggctccaaatcgttttggccattaaatgaatct 162  Q
    |||||||||||||||||||||||||   ||| |||||||| || || |||| ||||||||| ||||||||||||||| |||   ||| ||| || |||||    
T  43399448 ttatcctttatatctaatcctagcagtaatgcttaccctaatttcctaaccttaatcctaagtttttggctccaaattgttccagccgttagattaatct 43399547  T
Q  163 atgttgatctcca 175  Q
    |||||||||||||    
T  43399548 atgttgatctcca 43399560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 70 - 137
Target Start/End: Original strand, 53689246 - 53689313
Alignment:
Q  70 ttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaattttttggctccaa 137  Q
    |||||| ||||||||||||||||| |||||||| |||||||||||||| |||| ||||||||||||||    
T  53689246 ttatatttaatcctagcaaacatgcttaccctaattgccaaaccctaaacctacttttttggctccaa 53689313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 15259961 - 15260022
Alignment:
Q  4 gtttttggaaggaattgattgaagagtttgagaaattgattgtgaaattgattttagggtta 65  Q
    ||||||||||| |||||||||||||| ||   ||||||||| ||||||||||||||||||||    
T  15259961 gtttttggaagaaattgattgaagagcttcctaaattgattttgaaattgattttagggtta 15260022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 110 - 181
Target Start/End: Complemental strand, 45640717 - 45640645
Alignment:
Q  110 aaccctaatcctaatt-ttttggctccaaatcgttttggccattaaatgaatctatgttgatctccacacaat 181  Q
    |||||||||||||||  |||||||||||||| ||| || || ||| |||||||| ||||||||||||||||||    
T  45640717 aaccctaatcctaatggttttggctccaaatagttctgaccgttagatgaatctgtgttgatctccacacaat 45640645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 25612613 - 25612687
Alignment:
Q  64 tatcctttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaatt-ttttggctccaa 137  Q
    |||||||||||||||||  | ||||||||| |||||||| || || |||||||| ||||||| ||||||||||||    
T  25612613 tatcctttatatctaatggttgcaaacatgcttaccctaattccctaaccctaaacctaattgttttggctccaa 25612687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 128
Target Start/End: Complemental strand, 19009727 - 19009661
Alignment:
Q  62 gttatcctttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaattttt 128  Q
    |||||||||||||||||||||||||||||| |   |||||| ||||||| | |||| |||| |||||    
T  19009727 gttatcctttatatctaatcctagcaaacaagcaaaccctaattgccaacctctaaacctacttttt 19009661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 128
Target Start/End: Complemental strand, 14459314 - 14459257
Alignment:
Q  71 tatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaattttt 128  Q
    ||||| ||||||||||||||||| ||| |||| || ||||||||||| |||| |||||    
T  14459314 tatatataatcctagcaaacatgcttaacctaatttccaaaccctaaacctatttttt 14459257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 98
Target Start/End: Complemental strand, 49826525 - 49826492
Alignment:
Q  65 atcctttatatctaatcctagcaaacatgtttac 98  Q
    |||||||||||||||||||| |||||||||||||    
T  49826525 atcctttatatctaatcctaacaaacatgtttac 49826492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 4e-39; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 69 - 238
Target Start/End: Complemental strand, 23073505 - 23073331
Alignment:
Q  69 tttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaattttttggctccaaatcgttttggccattaaatgaatctatgttg 168  Q
    ||||||||||||||| ||||||||| |||||||| ||| ||||||||||||||||||||||| |||||||||||| ||||| |||||| ||||||||| |    
T  23073505 tttatatctaatccttgcaaacatgcttaccctaattgtcaaaccctaatcctaattttttgtctccaaatcgttctggccgttaaataaatctatgtag 23073406  T
Q  169 atctccacacaat-----tcttcccaataaatattttctttcaattttaagtcagaagtgcatgggtaacgtaca 238  Q
    |||||||||||||     | ||  ||||||| | ||||||||||||| |||||| ||||| || |||||||||||    
T  23073405 atctccacacaatccatctgttgtcaataaacaatttctttcaatttcaagtcacaagtggattggtaacgtaca 23073331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 65 - 175
Target Start/End: Original strand, 18645950 - 18646060
Alignment:
Q  65 atcctttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaattttttggctccaaatcgttttggccattaaatgaatctat 164  Q
    |||||||||||||||||||||||   |||||||||||| || |  |||||||||||||| ||||||||||||||| |||   ||| ||| || |||||||    
T  18645950 atcctttatatctaatcctagcagtaatgtttaccctaatttcttaaccctaatcctaagtttttggctccaaattgttccagccgttagattaatctat 18646049  T
Q  165 gttgatctcca 175  Q
    |||||||||||    
T  18646050 gttgatctcca 18646060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 68 - 139
Target Start/End: Original strand, 8840653 - 8840724
Alignment:
Q  68 ctttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaattttttggctccaaat 139  Q
    |||||||||||||||||||||||||| |||||||| |||||||||| ||| |||| ||||| ||||||||||    
T  8840653 ctttatatctaatcctagcaaacatgcttaccctaattgccaaaccttaaacctattttttcggctccaaat 8840724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 65 - 128
Target Start/End: Complemental strand, 25357620 - 25357557
Alignment:
Q  65 atcctttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaattttt 128  Q
    ||||||||||||||||  | ||||||||| |||||||| || ||||||||||| ||||||||||    
T  25357620 atcctttatatctaatggttgcaaacatgcttaccctaattaccaaaccctaaacctaattttt 25357557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 167
Target Start/End: Complemental strand, 20910750 - 20910652
Alignment:
Q  69 tttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaattttttggctccaaatcgttttggccattaaatgaatctatgtt 167  Q
    |||||||||||||||||||||||||   ||| |  ||||| ||||||||||||||     ||||||||| | ||||||||| ||| |||||||||||||    
T  20910750 tttatatctaatcctagcaaacatgcaaaccttcattgcctaaccctaatcctaaaaaaatggctccaagttgttttggccgttagatgaatctatgtt 20910652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 167
Target Start/End: Complemental strand, 20925198 - 20925100
Alignment:
Q  69 tttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaattttttggctccaaatcgttttggccattaaatgaatctatgtt 167  Q
    |||||||||||||||||||||||||   ||| |  ||||| ||||||||||||||     ||||||||| | ||||||||| ||| |||||||||||||    
T  20925198 tttatatctaatcctagcaaacatgcaaaccttcattgcctaaccctaatcctaaaaaaatggctccaagttgttttggccgttagatgaatctatgtt 20925100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 137
Target Start/End: Original strand, 2319907 - 2319976
Alignment:
Q  68 ctttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaat--tttttggctccaa 137  Q
    ||||||||||||||||| |||| |||||||||||| ||  | |||||||| ||||||  |||||||||||||    
T  2319907 ctttatatctaatcctaacaaatatgtttaccctaatt--ccaaccctaaacctaattgtttttggctccaa 2319976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 111 - 143
Target Start/End: Original strand, 34008653 - 34008685
Alignment:
Q  111 accctaatcctaattttttggctccaaatcgtt 143  Q
    |||||||| ||||||||||||||||||||||||    
T  34008653 accctaattctaattttttggctccaaatcgtt 34008685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 2e-38; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 64 - 208
Target Start/End: Original strand, 26449092 - 26449241
Alignment:
Q  64 tatcctttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaattttttggctccaaatcgttttggccattaaatgaatcta 163  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||  || || || ||| || ||||||    
T  26449092 tatcctttatatctaatcctagcaaacatgcttaccctaattgccaaaccctaattctaattttttggctccaaattattctgaccgttagataaatcta 26449191  T
Q  164 tgttgatctccacacaattc-----ttcccaataaatattttctttcaat 208  Q
     |||||||||||||||||||     ||||||||||| |||||||||||||    
T  26449192 agttgatctccacacaattcatctgttcccaataaacattttctttcaat 26449241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 64 - 143
Target Start/End: Original strand, 38403354 - 38403433
Alignment:
Q  64 tatcctttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaattttttggctccaaatcgtt 143  Q
    ||||||||||||||||||||||||   |||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  38403354 tatcctttatatctaatcctagcagcaatgcaaaccctatttgccaaaccctaatcctaattttttggctccaaatcgtt 38403433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 31409776 - 31409703
Alignment:
Q  65 atcctttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaattttttggctccaaa 138  Q
    ||||||||||| ||||||||||||||||| |||||||| || ||||||||| | |||| |||||||||||||||    
T  31409776 atcctttatatataatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaa 31409703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 63 - 139
Target Start/End: Complemental strand, 22145718 - 22145642
Alignment:
Q  63 ttatcctttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaattttttggctccaaat 139  Q
    |||||||||||||||||||||||||   ||| |||||||| || || |||||||||||||| |||||||||||||||    
T  22145718 ttatcctttatatctaatcctagcagtaatgcttaccctaatttcctaaccctaatcctaagtttttggctccaaat 22145642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 31140231 - 31140170
Alignment:
Q  4 gtttttggaaggaattgattgaagagtttgagaaattgattgtgaaattgattttagggtta 65  Q
    ||||||||||| |||||||||||||| ||   ||||||||||||||||||||||||||||||    
T  31140231 gtttttggaagaaattgattgaagagcttcctaaattgattgtgaaattgattttagggtta 31140170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 123
Target Start/End: Original strand, 4768477 - 4768536
Alignment:
Q  64 tatcctttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaa 123  Q
    |||||||||||||||||| ||||||||||| ||| |||| ||| |||||||||| |||||    
T  4768477 tatcctttatatctaatcttagcaaacatgcttatcctaattgtcaaaccctaaacctaa 4768536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 102
Target Start/End: Original strand, 1556305 - 1556337
Alignment:
Q  70 ttatatctaatcctagcaaacatgtttacccta 102  Q
    |||||||||||||||||||||||| ||||||||    
T  1556305 ttatatctaatcctagcaaacatgcttacccta 1556337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 9e-34; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 64 - 149
Target Start/End: Original strand, 38681136 - 38681221
Alignment:
Q  64 tatcctttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaattttttggctccaaatcgttttggcc 149  Q
    |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  38681136 tatcctttatatctaatcctagcaaacatgcttaccctatttgctaaaccctaatcctaattttttggctccaaatcgttctggcc 38681221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 65 - 181
Target Start/End: Original strand, 26955412 - 26955528
Alignment:
Q  65 atcctttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaattttttggctccaaatcgttttggccattaaatgaatctat 164  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||| || || || ||| || |||||||    
T  26955412 atcctttatatctaattctagcaaacatgtttaccctaattgccaaaccctaatcttaattttttgactccaaatcattctgaccgttagataaatctat 26955511  T
Q  165 gttgatctccacacaat 181  Q
    ||||||||| |||||||    
T  26955512 gttgatctctacacaat 26955528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 14330720 - 14330655
Alignment:
Q  1 caagtttttggaaggaattgattgaagagtttgagaaattgattgtgaaattgattttagggttat 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14330720 caagtttttggaaggaattgattgaagagtttgagaaattgattgtgaaattgattttagggttat 14330655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 63 - 175
Target Start/End: Original strand, 8022722 - 8022834
Alignment:
Q  63 ttatcctttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaattttttggctccaaatcgttttggccattaaatgaatct 162  Q
    |||||||||||||||||||||||||   |||||||||||| || || |||||||||||||| ||||||||||||||| |||   ||| ||| || |||||    
T  8022722 ttatcctttatatctaatcctagcagtaatgtttaccctaatttcctaaccctaatcctaagtttttggctccaaattgttccagccgttagattaatct 8022821  T
Q  163 atgttgatctcca 175  Q
    |||||||||||||    
T  8022822 atgttgatctcca 8022834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 74 - 149
Target Start/End: Original strand, 38682400 - 38682474
Alignment:
Q  74 atctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaattttttggctccaaatcgttttggcc 149  Q
    |||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||| |||||    
T  38682400 atctaatcctagcaaacatgcttaccctatt-gctaaaccctaatcctaattttttggctccaaatcgttctggcc 38682474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 26955692 - 26955744
Alignment:
Q  293 tgctactattttcaaacaaaaaactgatacacgttttttaggcttccttttct 345  Q
    ||||||||||||||||||||||||||||| |  ||||||||||||||||||||    
T  26955692 tgctactattttcaaacaaaaaactgatataatttttttaggcttccttttct 26955744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 110 - 239
Target Start/End: Complemental strand, 30850222 - 30850087
Alignment:
Q  110 aaccctaatcctaatt-ttttggctccaaatcgttttggccattaaatgaatctatgttgatctccacacaa-----ttcttcccaataaatattttctt 203  Q
    |||||||||| ||||  |||||||||||||||||| ||||| ||| || ||| | ||||||||| |||||||     || ||||||||||| | | ||||    
T  30850222 aaccctaatcttaatgattttggctccaaatcgttctggccgttagatcaatatgtgttgatctacacacaatctatttgttcccaataaacactatctt 30850123  T
Q  204 tcaattttaagtcagaagtgcatgggtaacgtacac 239  Q
    |||||||||| ||| |||||||| |||||| |||||    
T  30850122 tcaattttaaatcacaagtgcattggtaacatacac 30850087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 419 - 459
Target Start/End: Original strand, 26955817 - 26955857
Alignment:
Q  419 atggagctttttcacccttctcatctgttacatccattcat 459  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  26955817 atggagctttttcacccttcccatctgttacatccattcat 26955857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 27229298 - 27229350
Alignment:
Q  126 ttttggctccaaatcgttttggccattaaatgaatctatgttgatctccacac 178  Q
    |||||||||||||| ||| ||||||||| || |||||||||||||||||||||    
T  27229298 ttttggctccaaattgttctggccattagatcaatctatgttgatctccacac 27229350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 137
Target Start/End: Complemental strand, 29729421 - 29729350
Alignment:
Q  65 atcctttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaattttttggctccaa 137  Q
    ||||||||||| |||||| |||||  ||| |||||||| |||||||||| ||| |||||||||||||||||||    
T  29729421 atcctttatatttaatccaagcaat-atgcttaccctaattgccaaaccttaaacctaattttttggctccaa 29729350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 26955561 - 26955607
Alignment:
Q  187 ccaataaatattttctttcaattttaagtcagaagtgcatgggtaac 233  Q
    |||||||| |||||||||||||||||||||| |||||||| ||||||    
T  26955561 ccaataaacattttctttcaattttaagtcataagtgcattggtaac 26955607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 123
Target Start/End: Complemental strand, 42314006 - 42313948
Alignment:
Q  65 atcctttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaa 123  Q
    ||||||||||||||||||| |||||||||   |||||| ||||| ||||||||||||||    
T  42314006 atcctttatatctaatcctggcaaacatgcaaaccctaattgcctaaccctaatcctaa 42313948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 136
Target Start/End: Original strand, 765506 - 765579
Alignment:
Q  63 ttatcctttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaattttttggctcca 136  Q
    ||||||||||||| ||||| |||||||||||   |||||  ||||||| | |||| |||| |||||||||||||    
T  765506 ttatcctttatatttaatcgtagcaaacatgcaaaccctgattgccaacctctaaccctacttttttggctcca 765579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 9987334 - 9987269
Alignment:
Q  1 caagtttttggaaggaattgattgaagagtttgagaaattgattgtgaaattgattttagggttat 66  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9987334 caagttcttggaaggaattgattgaagagtttgagaaattgattgtgaaattgattttagggttat 9987269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 65 - 143
Target Start/End: Original strand, 24759474 - 24759552
Alignment:
Q  65 atcctttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaattttttggctccaaatcgtt 143  Q
    |||||||||||||||||||||||||||||||||||||| || |  |||||||||||||| |||||||||||||||||||    
T  24759474 atcctttatatctaatcctagcaaacatgtttaccctaatttcttaaccctaatcctaagtttttggctccaaatcgtt 24759552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 198 - 262
Target Start/End: Complemental strand, 18941252 - 18941188
Alignment:
Q  198 tttctttcaattttaagtcagaagtgcatgggtaacgtacactttacaccaatattctcctccac 262  Q
    |||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||    
T  18941252 tttctttcaattttaagtcacaagtgcattggtaacgtacacttcacaccaatattctcctccac 18941188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 17218614 - 17218676
Alignment:
Q  4 gtttttggaaggaattgattgaagagtttgagaaattgattgtgaaattgattttagggttat 66  Q
    ||||||||||| |||||||||||||| ||||||| ||||| ||||||||||||||||||||||    
T  17218614 gtttttggaagaaattgattgaagaggttgagaagttgatggtgaaattgattttagggttat 17218676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 69 - 137
Target Start/End: Original strand, 1971096 - 1971164
Alignment:
Q  69 tttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaattttttggctccaa 137  Q
    ||||||||||||||||||||||||| |||||||| || |||||||||||  ||| ||||||||||||||    
T  1971096 tttatatctaatcctagcaaacatgcttaccctaatttccaaaccctaaatctacttttttggctccaa 1971164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 13937500 - 13937439
Alignment:
Q  4 gtttttggaaggaattgattgaagagtttgagaaattgattgtgaaattgattttagggtta 65  Q
    ||||||||||| |||||||||||||| ||   ||||||||||||||||||||||||||||||    
T  13937500 gtttttggaagaaattgattgaagagcttcctaaattgattgtgaaattgattttagggtta 13937439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 39286531 - 39286470
Alignment:
Q  4 gtttttggaaggaattgattgaagagtttgagaaattgattgtgaaattgattttagggtta 65  Q
    ||||||||||| |||||||||||||| ||   ||||||||| ||||||||||||||||||||    
T  39286531 gtttttggaagaaattgattgaagagcttcctaaattgattatgaaattgattttagggtta 39286470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 129
Target Start/End: Original strand, 11503204 - 11503268
Alignment:
Q  65 atcctttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaatttttt 129  Q
    |||||| ||||||||||||| ||||||| |||| |||| |||| ||||||||| |||||||||||    
T  11503204 atccttcatatctaatcctaccaaacatatttatcctaattgcgaaaccctaaacctaatttttt 11503268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 93 - 140
Target Start/End: Complemental strand, 18941320 - 18941273
Alignment:
Q  93 gtttaccctatttgccaaaccctaatcctaattttttggctccaaatc 140  Q
    |||||||||| ||||||||||||| | |||||||||||||||||||||    
T  18941320 gtttaccctaattgccaaaccctatttctaattttttggctccaaatc 18941273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 63 - 137
Target Start/End: Original strand, 43903418 - 43903493
Alignment:
Q  63 ttatcctttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaa-ttttttggctccaa 137  Q
    ||||||||||||||||||  |||||||||||  ||||||| |||| ||||||||| | ||| ||||||||||||||    
T  43903418 ttatcctttatatctaatgttagcaaacatgcctaccctaattgcaaaaccctaaacttaatttttttggctccaa 43903493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 13761779 - 13761839
Alignment:
Q  63 ttatcctttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaa 123  Q
    |||||||||||||||||||||||||||||||   |||||| ||||  || |||||||||||    
T  13761779 ttatcctttatatctaatcctagcaaacatgcaaaccctaattgcataaacctaatcctaa 13761839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 65 - 137
Target Start/End: Original strand, 29836239 - 29836311
Alignment:
Q  65 atcctttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaattttttggctccaa 137  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||    
T  29836239 atcctttatatctaatcctagcaaacatgtttaccctaattgccaaaccctaaacctacttttttggctccaa 29836311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 65 - 137
Target Start/End: Complemental strand, 40981666 - 40981594
Alignment:
Q  65 atcctttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaattttttggctccaa 137  Q
    ||||||||||||||||||||||||||||| |||||||| || ||||||||||| |||| ||||||||||||||    
T  40981666 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaaccctaaacctacttttttggctccaa 40981594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 50290432 - 50290505
Alignment:
Q  64 tatcctttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaattttttggctccaa 137  Q
    ||||||||||||||||||||| |||||||| ||| ||||  | ||||||||||| |||| ||||||||||||||    
T  50290432 tatcctttatatctaatcctaacaaacatgcttaacctaaattccaaaccctaaacctatttttttggctccaa 50290505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 125
Target Start/End: Original strand, 50860118 - 50860178
Alignment:
Q  65 atcctttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaatt 125  Q
    |||||||||||||||||||||||||| || |||||||| |||| ||||| ||| |||||||    
T  50860118 atcctttatatctaatcctagcaaacgtgcttaccctaattgctaaaccttaaacctaatt 50860178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 120
Target Start/End: Complemental strand, 10012036 - 10011985
Alignment:
Q  69 tttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcc 120  Q
    ||||||| ||||||||||||||||| |||||||| || | ||||||||||||    
T  10012036 tttatatttaatcctagcaaacatgcttaccctaattccaaaaccctaatcc 10011985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 93
Target Start/End: Complemental strand, 39076296 - 39076266
Alignment:
Q  63 ttatcctttatatctaatcctagcaaacatg 93  Q
    |||||||||||||||||||||||||||||||    
T  39076296 ttatcctttatatctaatcctagcaaacatg 39076266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 14210491 - 14210418
Alignment:
Q  65 atcctttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaattttttggctccaaa 138  Q
    ||||||||||||||||||||||||||||| |||||||| || ||||||||| | |||| |||||||||||||||    
T  14210491 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaa 14210418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 14211460 - 14211387
Alignment:
Q  65 atcctttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaattttttggctccaaa 138  Q
    ||||||||||||||||||||||||||||| |||||||| || ||||||||| | |||| |||||||||||||||    
T  14211460 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaa 14211387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 14212411 - 14212338
Alignment:
Q  65 atcctttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaattttttggctccaaa 138  Q
    ||||||||||||||||||||||||||||| |||||||| || ||||||||| | |||| |||||||||||||||    
T  14212411 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaa 14212338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 14213380 - 14213307
Alignment:
Q  65 atcctttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaattttttggctccaaa 138  Q
    ||||||||||||||||||||||||||||| |||||||| || ||||||||| | |||| |||||||||||||||    
T  14213380 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaa 14213307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 14214348 - 14214275
Alignment:
Q  65 atcctttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaattttttggctccaaa 138  Q
    ||||||||||||||||||||||||||||| |||||||| || ||||||||| | |||| |||||||||||||||    
T  14214348 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaa 14214275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 14215317 - 14215244
Alignment:
Q  65 atcctttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaattttttggctccaaa 138  Q
    ||||||||||||||||||||||||||||| |||||||| || ||||||||| | |||| |||||||||||||||    
T  14215317 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaa 14215244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 14218188 - 14218115
Alignment:
Q  65 atcctttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaattttttggctccaaa 138  Q
    ||||||||||||||||||||||||||||| |||||||| || ||||||||| | |||| |||||||||||||||    
T  14218188 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaa 14218115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 14219158 - 14219085
Alignment:
Q  65 atcctttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaattttttggctccaaa 138  Q
    ||||||||||||||||||||||||||||| |||||||| || ||||||||| | |||| |||||||||||||||    
T  14219158 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaa 14219085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 14220127 - 14220054
Alignment:
Q  65 atcctttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaattttttggctccaaa 138  Q
    ||||||||||||||||||||||||||||| |||||||| || ||||||||| | |||| |||||||||||||||    
T  14220127 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaa 14220054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 14221078 - 14221005
Alignment:
Q  65 atcctttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaattttttggctccaaa 138  Q
    ||||||||||||||||||||||||||||| |||||||| || ||||||||| | |||| |||||||||||||||    
T  14221078 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaa 14221005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 14222047 - 14221974
Alignment:
Q  65 atcctttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaattttttggctccaaa 138  Q
    ||||||||||||||||||||||||||||| |||||||| || ||||||||| | |||| |||||||||||||||    
T  14222047 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaa 14221974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 14223016 - 14222943
Alignment:
Q  65 atcctttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaattttttggctccaaa 138  Q
    ||||||||||||||||||||||||||||| |||||||| || ||||||||| | |||| |||||||||||||||    
T  14223016 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaa 14222943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 65 - 176
Target Start/End: Original strand, 30176040 - 30176151
Alignment:
Q  65 atcctttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaattttttggctccaaatcgttttggccattaaatgaatctat 164  Q
    ||||||||||| |||||||||||   ||| |||||||| ||  | |||||||||||||| ||||||||||||||| ||||  ||| ||| || |||||||    
T  30176040 atcctttatatttaatcctagcagtaatgcttaccctaattttctaaccctaatcctaagtttttggctccaaattgtttcagccgttagattaatctat 30176139  T
Q  165 gttgatctccac 176  Q
    ||||||||||||    
T  30176140 gttgatctccac 30176151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 14209540 - 14209467
Alignment:
Q  65 atcctttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaattttttggctccaaa 138  Q
    ||||||||||||||||| ||||||||||| |||||||| || ||||||||| | |||| |||||||||||||||    
T  14209540 atcctttatatctaatcgtagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaa 14209467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 14216286 - 14216213
Alignment:
Q  65 atcctttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaattttttggctccaaa 138  Q
    ||||||||||| ||||||||||||||||| |||||||| || ||||||||| | |||| |||||||||||||||    
T  14216286 atcctttatatataatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaa 14216213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 14217237 - 14217164
Alignment:
Q  65 atcctttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaattttttggctccaaa 138  Q
    ||||||||||||||||| ||||||||||| |||||||| || ||||||||| | |||| |||||||||||||||    
T  14217237 atcctttatatctaatcgtagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaa 14217164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 140
Target Start/End: Original strand, 11214843 - 11214913
Alignment:
Q  69 tttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaattttttggctccaaatc 140  Q
    |||||||||||||||||||   ||| |||||||| || |  |||||||||||||| ||||||||||||||||    
T  11214843 tttatatctaatcctagcagtgatgcttaccctaatttcttaaccctaatcctaa-tttttggctccaaatc 11214913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 140
Target Start/End: Original strand, 11225354 - 11225424
Alignment:
Q  69 tttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaattttttggctccaaatc 140  Q
    |||||||||||||||||||   ||| |||||||| || |  |||||||||||||| ||||||||||||||||    
T  11225354 tttatatctaatcctagcagtgatgcttaccctaatttcttaaccctaatcctaa-tttttggctccaaatc 11225424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 123
Target Start/End: Complemental strand, 37619041 - 37618987
Alignment:
Q  68 ctttatatctaatcctagcaaacatgtttaccctatttgccaaaccctaatcctaa 123  Q
    |||||||||||||||||||||||||| |||||||| || || |||||||| |||||    
T  37619041 ctttatatctaatcctagcaaacatgcttaccctaatt-cctaaccctaaacctaa 37618987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 93
Target Start/End: Complemental strand, 1678521 - 1678493
Alignment:
Q  65 atcctttatatctaatcctagcaaacatg 93  Q
    |||||||||||||||||||||||||||||    
T  1678521 atcctttatatctaatcctagcaaacatg 1678493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 93
Target Start/End: Complemental strand, 14586910 - 14586882
Alignment:
Q  65 atcctttatatctaatcctagcaaacatg 93  Q
    |||||||||||||||||||||||||||||    
T  14586910 atcctttatatctaatcctagcaaacatg 14586882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 66
Target Start/End: Complemental strand, 6669 - 6634
Alignment:
Q  31 ttgagaaattgattgtgaaattgattttagggttat 66  Q
    ||||||| ||||||||||||||||||||||||||||    
T  6669 ttgagaagttgattgtgaaattgattttagggttat 6634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 93
Target Start/End: Original strand, 230464 - 230492
Alignment:
Q  65 atcctttatatctaatcctagcaaacatg 93  Q
    |||||||||||||||||||||||||||||    
T  230464 atcctttatatctaatcctagcaaacatg 230492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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