View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8426_low_7 (Length: 353)
Name: NF8426_low_7
Description: NF8426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8426_low_7 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 11 - 353
Target Start/End: Complemental strand, 30166426 - 30166079
Alignment:
| Q |
11 |
caaagagactaaacaacctactggcaatgactagacaaatttcatcttcactgaggagctgcaaggaggaaacagcagagctatgtgatttgtgaactgg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30166426 |
caaagagactaaacaacctactggcaatgactagacaaatttcatcttcactaaggagctgcaaggaggaaacagcagagctatgtgatttgtgaactgg |
30166327 |
T |
|
| Q |
111 |
catttgagctgctgataaagatcacctctactctcgattatgttatgtcttttcccagtttcagtattctgcctatcacttcccatgcttcatgatacca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30166326 |
catttgagctgctgataaagatcacctctactctcgattatgttatgtcttttcccagtttcagtattctgcctatcacttcccatgcttcatgatacca |
30166227 |
T |
|
| Q |
211 |
agagttgataatacaaggtagatatcagtaaaatggtaaatatgaatatttcacaatcaaat-----tcttctagtttggtaccactagtcatcttaagc |
305 |
Q |
| |
|
|||||| |||||||||| | ||||||||||||||| ||||| |||||||||||||||||| |||| | |||||||| ||||||| ||||||||| |
|
|
| T |
30166226 |
agagttcataatacaagatcaatatcagtaaaatggaaaatacaaatatttcacaatcaaatcaaattcttattgtttggtatcactagttatcttaagc |
30166127 |
T |
|
| Q |
306 |
ttgctcagtgccatcggggagtgaaagcagagactccttatacaccgc |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30166126 |
ttgctcagtgccatcggggagtgaaagcagagactctatatacaccgc |
30166079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 194 - 353
Target Start/End: Original strand, 30130576 - 30130741
Alignment:
| Q |
194 |
catgcttcatgataccaagagttgataatacaaggtagatat-cagtaa--aatggtaaatatgaatatttcacaatcaaattcttctagtttggtacca |
290 |
Q |
| |
|
|||||||||||||| |||||||| ||||| ||| |||||| || ||| |||||||||| ||||||||||||||||| ||||||| ||||| || || |
|
|
| T |
30130576 |
catgcttcatgatagcaagagttcataatgcaaaatagataaacattaagaaatggtaaatgtgaatatttcacaatcacattcttcatgtttgttatca |
30130675 |
T |
|
| Q |
291 |
ctagtca---tcttaagcttgctcagtgccatcggggagtgaaagcagagactccttatacaccgc |
353 |
Q |
| |
|
|||||| |||||||||| |||||||| |||| |||||| |||||||| |||||||||| |
|
|
| T |
30130676 |
ttagtcatcttcttaagcttcatcagtgccgctagggaatgaaagaagagactctgtatacaccgc |
30130741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 13 - 352
Target Start/End: Original strand, 43164170 - 43164513
Alignment:
| Q |
13 |
aagagactaaacaacctactggcaatgactagacaaatttcatcttcactgaggagctgcaaggaggaaacagcagagctatgtgatttgtgaactggca |
112 |
Q |
| |
|
|||||| ||||||| | ||||| ||||| || || || ||||||||| || |||||||||||||| ||||| ||||||||| | |||| |||||| || |
|
|
| T |
43164170 |
aagagattaaacaaacaactggaaatgagtaaacgaaattcatcttcgctaaggagctgcaaggaagaaacggcagagctacgcgattcgtgaaccaaca |
43164269 |
T |
|
| Q |
113 |
tttgagctgctgataaagatcacctctactctcgattatgttatgtcttttcccagtttcagtattctgcctatcacttcccatgcttcatgat----ac |
208 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||||||||||||| | || ||||| |||| ||||||||||||| ||||||| ||||| || |
|
|
| T |
43164270 |
tttgagctgctgataaagatcaactctactctcaattatgttatgtcttcttgcaatttcactattttgcctatcacttcacatgctttatgattccaac |
43164369 |
T |
|
| Q |
209 |
caagagttgataatacaaggtagatatcagtaaaatggtaaatatgaatatttcacaatcaaattcttctagtttggtaccactagtcatcttaagcttg |
308 |
Q |
| |
|
|||||||| || ||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||| |
|
|
| T |
43164370 |
caagagttcatgatacaagatagatatcactaaaaaggtaaatatgaatatttcacaatcaaattcttctagtttgttatcactggtcatcttaagcttg |
43164469 |
T |
|
| Q |
309 |
ctcagtgccatcggggagtgaaagcagagactccttatacaccg |
352 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || ||||||||| |
|
|
| T |
43164470 |
ctcagtgccatcagggagtgaaagcagagattctgtatacaccg |
43164513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 211 - 304
Target Start/End: Original strand, 41310714 - 41310807
Alignment:
| Q |
211 |
agagttgataatacaaggtagatatcagtaaaatggtaaatatgaatatttcacaatcaaattcttctagtttggtaccactagtcatcttaag |
304 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
41310714 |
agagttcataatacaagatagatatcagtaaaatgataaataccaatatttcacaatcaaattcttctagtttggtatcactagtcatcttaag |
41310807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 347
Target Start/End: Original strand, 49040579 - 49040628
Alignment:
| Q |
298 |
tcttaagcttgctcagtgccatcggggagtgaaagcagagactccttata |
347 |
Q |
| |
|
||||||||||||| | || ||| |||||||||||||||||||||| |||| |
|
|
| T |
49040579 |
tcttaagcttgctaactgtcattggggagtgaaagcagagactccgtata |
49040628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University