View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8426_low_8 (Length: 316)
Name: NF8426_low_8
Description: NF8426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8426_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 15 - 304
Target Start/End: Original strand, 15442450 - 15442739
Alignment:
| Q |
15 |
agaacaacaataaatagacagaaaataaatagtaaatgttaacccaaattacaaaaacattacaagtctcaaacccatctcctctaattttcatataaaa |
114 |
Q |
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| T |
15442450 |
agaacaacaatatatagatagaaaataaatagtaaatgttaacccaaattacataaacactacaagtctcaaacccatctcctctagttttcatataaaa |
15442549 |
T |
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| Q |
115 |
tcatcagatttgatagcaactggtagtctcactttcccttctcttatggccaacaagtccacattatcaccatataagtaagctttcaagaatgcaacca |
214 |
Q |
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| T |
15442550 |
tcatcagatttgatagcaattggtactctcactttcccttctcttatggccaacaaatccacattatcaccatataagtaagctttcaagaatgcaacca |
15442649 |
T |
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| Q |
215 |
taactcctccaacaaacgttctcataggtttccttgattcaccattcttacataaacaataagtaagtttccctctaaaacctggagtat |
304 |
Q |
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| T |
15442650 |
taactcctccaacaaacgttctcataggtttccttgattcaccattcttacataaacaataagtaagtttccctctaaaacctggggtat |
15442739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 154 - 292
Target Start/End: Original strand, 15448478 - 15448616
Alignment:
| Q |
154 |
tctcttatggccaacaagtccacattatcaccatataagtaagctttcaagaatgcaaccataactcctccaacaaacgttctcataggtttccttgatt |
253 |
Q |
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|||||||| ||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
15448478 |
tctcttatagccaataagtccacattatcaccatgcaaataagctttcaagaatgcaaccataactcctccaacaaacatcctcataggtttccttgatt |
15448577 |
T |
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| Q |
254 |
caccattcttacataaacaataagtaagtttccctctaa |
292 |
Q |
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| T |
15448578 |
caccattcttacataaacaataactaactttccctctaa |
15448616 |
T |
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