View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8426_low_9 (Length: 287)

Name: NF8426_low_9
Description: NF8426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8426_low_9
NF8426_low_9
[»] chr2 (3 HSPs)
chr2 (18-281)||(4243038-4243287)
chr2 (121-260)||(42703921-42704060)
chr2 (111-265)||(647269-647422)
[»] chr5 (7 HSPs)
chr5 (116-281)||(33496259-33496425)
chr5 (111-267)||(42577950-42578106)
chr5 (121-268)||(13093630-13093777)
chr5 (121-268)||(13022106-13022253)
chr5 (144-262)||(23150040-23150158)
chr5 (111-248)||(14277195-14277332)
chr5 (108-238)||(7273756-7273886)
[»] chr3 (7 HSPs)
chr3 (111-267)||(52966041-52966197)
chr3 (111-248)||(51141345-51141482)
chr3 (147-262)||(2500406-2500521)
chr3 (144-271)||(2332410-2332536)
chr3 (123-204)||(24596131-24596212)
chr3 (165-260)||(39695226-39695321)
chr3 (148-193)||(4755709-4755754)
[»] chr1 (9 HSPs)
chr1 (108-262)||(14647356-14647510)
chr1 (108-271)||(12459965-12460128)
chr1 (121-262)||(13189517-13189658)
chr1 (111-264)||(51492957-51493110)
chr1 (119-267)||(20128381-20128529)
chr1 (121-262)||(27644548-27644689)
chr1 (150-224)||(50181614-50181688)
chr1 (108-260)||(44138466-44138618)
chr1 (158-229)||(27465617-27465688)
[»] scaffold0703 (1 HSPs)
scaffold0703 (108-271)||(857-1020)
[»] chr7 (8 HSPs)
chr7 (111-262)||(46598537-46598688)
chr7 (111-262)||(31801220-31801371)
chr7 (111-217)||(512590-512696)
chr7 (144-262)||(12351928-12352046)
chr7 (121-268)||(43968796-43968943)
chr7 (144-262)||(41146525-41146643)
chr7 (108-244)||(18222698-18222834)
chr7 (112-222)||(31402552-31402662)
[»] chr6 (3 HSPs)
chr6 (111-248)||(21731033-21731170)
chr6 (108-271)||(16861976-16862139)
chr6 (147-217)||(10160191-10160261)
[»] chr4 (4 HSPs)
chr4 (111-263)||(54422600-54422752)
chr4 (144-262)||(32498317-32498435)
chr4 (111-188)||(29016903-29016980)
chr4 (142-223)||(43732685-43732766)
[»] chr8 (3 HSPs)
chr8 (147-217)||(9181967-9182037)
chr8 (147-217)||(11626236-11626306)
chr8 (118-217)||(29929639-29929738)
[»] scaffold0007 (1 HSPs)
scaffold0007 (147-229)||(189602-189684)
[»] scaffold0010 (1 HSPs)
scaffold0010 (108-262)||(237882-238036)


Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 281
Target Start/End: Original strand, 4243038 - 4243287
Alignment:
Q  18 gtatgtactcctaatatctctcaatgctatctgtaactaatgttacacattttattatcgattttatggctttataagattaaactgagttatttcccta 117  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4243038 gtatgtactcctaatatctctcagtgctatctgtaactaatgttacacattttattatcgattttatggctttataagattaaactgagttatttcccta 4243137  T
Q  118 gacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaa 217  Q
    ||||||| |             |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4243138 gacgggact-------------gattggtcataatccaagctatacatggaggagtctatggagtactcaatctttgctcactttgggtcatagatggaa 4243224  T
Q  218 tattggagatggctcaaaaataaatgtatggaccatgccttggatacgtaatctttcttctcac 281  Q
     |||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  4243225 -attggagatggctcgaaaataaatctatggaccatgccttggatacgtaatcttccttctcac 4243287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 260
Target Start/End: Complemental strand, 42704060 - 42703921
Alignment:
Q  121 gggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatat 220  Q
    ||||||||||||| |  || ||||| ||||||||| ||| ||| ||||| ||||| |||||||| ||| | ||||| || |||||||||| || ||| ||    
T  42704060 gggatttcttggaggtccctattggccataatccaagctttacttggagaagtctttggagtacccaacacttgcttacattgggtcatatattgaagat 42703961  T
Q  221 tggagatggctcaaaaataaatgtatggaccatgccttgg 260  Q
    ||| |||||  | ||||| ||||| |||| ||||||||||    
T  42703960 tggtgatggtgccaaaattaatgtgtggaacatgccttgg 42703921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 265
Target Start/End: Original strand, 647269 - 647422
Alignment:
Q  111 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 210  Q
    ||||||||||| ||||||||||| || ||  | || || || ||| |||| || ||||||||||||||||||||||||| ||| || || |||||  |||    
T  647269 ttccctagacgagatttcttggaggcccctctgggccacaacccaagctacacttggaggagtctatggagtactcaatctttacttacattgggatata 647368  T
Q  211 gatggaatattggagatggctcaaaaataaatgtatggaccatgccttggatacg 265  Q
    ||||||| ||||| |||||||| || || || || ||||| |  |||||||||||    
T  647369 gatggaa-attggtgatggctcgaatatcaacgtgtggactacaccttggatacg 647422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 116 - 281
Target Start/End: Complemental strand, 33496425 - 33496259
Alignment:
Q  116 tagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaa-tatttgctcactttgggtcatagatg 214  Q
    |||| ||||||| ||||| | ||||||||||||||||||| |||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  33496425 tagatgggatttattggacgaaccgattggtcataatccaagctacacatggaggagtccatggagtactcaaatatttgctcactttgggtcatagatg 33496326  T
Q  215 gaatattggagatggctcaaaaataaatgtatggaccatgccttggatacgtaatctttcttctcac 281  Q
    ||| |||||||||||||| ||||||||| |||| |||||||| || |||||||||||||||||||||    
T  33496325 gaagattggagatggctcgaaaataaatctatgtaccatgccatgaatacgtaatctttcttctcac 33496259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 111 - 267
Target Start/End: Complemental strand, 42578106 - 42577950
Alignment:
Q  111 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 210  Q
    ||||||||| |||||||||||||||| ||  |||| ||||||||| |||| |||||||||||||| ||||| ||||||| ||| || || ||||||||||    
T  42578106 ttccctagaagggatttcttggatgcccctcttggccataatccaagctacacatggaggagtctttggagcactcaatctttacttaccttgggtcata 42578007  T
Q  211 gatggaatattggagatggctcaaaaataaatgtatggaccatgccttggatacgta 267  Q
    ||||||| ||||||||||| ||||| |||||||||||| | ||||||||||||||||    
T  42578006 gatggaagattggagatggttcaaacataaatgtatggtctatgccttggatacgta 42577950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 121 - 268
Target Start/End: Complemental strand, 13093777 - 13093630
Alignment:
Q  121 gggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatat 220  Q
    ||||||||||||||||  |  | |||||||||||| ||| ||| ||||||| ||| |||||||||||| ||||||| ||||||||| |||||||||| ||    
T  13093777 gggatttcttggatgcctccctcggtcataatccaagctttacttggaggaatctttggagtactcaacatttgcttactttgggttatagatggaaaat 13093678  T
Q  221 tggagatggctcaaaaataaatgtatggaccatgccttggatacgtaa 268  Q
    ||| || ||  | ||||| ||||| ||||  ||||||||||| |||||    
T  13093677 tggtgacggtacgaaaattaatgtgtggaatatgccttggatccgtaa 13093630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 121 - 268
Target Start/End: Complemental strand, 13022253 - 13022106
Alignment:
Q  121 gggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatat 220  Q
    ||||||||||||||||  |  | |||||||||||| ||| ||| ||||||| ||| |||||||||||| |||| || ||||||||| |||||||||| ||    
T  13022253 gggatttcttggatgcctccctcggtcataatccaagctttacttggaggaatctttggagtactcaacattttcttactttgggttatagatggaaaat 13022154  T
Q  221 tggagatggctcaaaaataaatgtatggaccatgccttggatacgtaa 268  Q
    ||| || ||  | ||||| ||||| ||||  ||||||||||| |||||    
T  13022153 tggtgacggtacgaaaattaatgtttggaatatgccttggatccgtaa 13022106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 144 - 262
Target Start/End: Original strand, 23150040 - 23150158
Alignment:
Q  144 ggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggagatggctcaaaaataaatg 243  Q
    |||||||||||| | || |||||||||||||||||||||||||||| ||| || || ||||| ||||| ||||| |||||||| || ||  |||| ||||    
T  23150040 ggtcataatccaagttacacatggaggagtctatggagtactcaatctttacttaccttgggccataggtggaaaattggagacggttctcaaattaatg 23150139  T
Q  244 tatggaccatgccttggat 262  Q
    | ||||  |||||||||||    
T  23150140 tgtggagtatgccttggat 23150158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 111 - 248
Target Start/End: Complemental strand, 14277332 - 14277195
Alignment:
Q  111 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 210  Q
    |||||| | ||||| ||||||||||  ||  |||||||||||||| |||| |   |||||||||| ||||||||||||| | ||   || ||||||||||    
T  14277332 ttcccttgtcgggacttcttggatgtccctcttggtcataatccaagctacatccggaggagtctttggagtactcaatctctgtatacattgggtcata 14277233  T
Q  211 gatggaatattggagatggctcaaaaataaatgtatgg 248  Q
    ||||||| |||||||  || |||||||||||| |||||    
T  14277232 gatggaagattggaggcggttcaaaaataaatttatgg 14277195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 238
Target Start/End: Original strand, 7273756 - 7273886
Alignment:
Q  108 tatttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtc 207  Q
    ||||||||  || ||||||||||||||||  |  | || ||||||||| |||| |||||||| || || |||||||| ||| |||| || || |||||||    
T  7273756 tatttcccacgaagggatttcttggatgcctctctcggccataatccaagctacacatggagaagcctttggagtacacaacatttacttaccttgggtc 7273855  T
Q  208 atagatggaatattggagatggctcaaaaat 238  Q
    || ||||||| ||| ||||||| || |||||    
T  7273856 atggatggaagattagagatggttccaaaat 7273886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 111 - 267
Target Start/End: Complemental strand, 52966197 - 52966041
Alignment:
Q  111 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 210  Q
    ||||||||| |||||||||||||||| ||  |||| ||||||||| |||| |||||||||||||| ||||| ||||||| ||| || || ||||||||||    
T  52966197 ttccctagaagggatttcttggatgcccctcttggccataatccaagctacacatggaggagtctttggagcactcaatctttacttaccttgggtcata 52966098  T
Q  211 gatggaatattggagatggctcaaaaataaatgtatggaccatgccttggatacgta 267  Q
    ||||||| ||||||||||| ||||| |||||||||||| | ||||||||||||||||    
T  52966097 gatggaagattggagatggttcaaacataaatgtatggtctatgccttggatacgta 52966041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 111 - 248
Target Start/End: Complemental strand, 51141482 - 51141345
Alignment:
Q  111 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 210  Q
    |||||| | ||||| ||||||||||| || ||||||||||||||| | || |||||||| | ||| ||||||||||||||| |||| || ||||||||||    
T  51141482 ttccctcgtcgggacttcttggatgcccctattggtcataatccaagttacacatggagaattctttggagtactcaatatctgcttaccttgggtcata 51141383  T
Q  211 gatggaatattggagatggctcaaaaataaatgtatgg 248  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  51141382 gatggaagattggagatggttcaaaaataaatgtatgg 51141345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 147 - 262
Target Start/End: Complemental strand, 2500521 - 2500406
Alignment:
Q  147 cataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggagatggctcaaaaataaatgtat 246  Q
    ||||||||| | || |||||||||||||||||||||||||||| ||| || || ||||| ||||| ||||| |||||||| |||||  |||| ||||| |    
T  2500521 cataatccaagttacacatggaggagtctatggagtactcaatctttacttaccttgggccataggtggaaaattggagacggctctcaaattaatgtgt 2500422  T
Q  247 ggaccatgccttggat 262  Q
    |||  |||||||||||    
T  2500421 ggagtatgccttggat 2500406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 144 - 271
Target Start/End: Original strand, 2332410 - 2332536
Alignment:
Q  144 ggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggagatggctcaaaaataaatg 243  Q
    |||||||||||| ||||||| ||||||||||| ||||||||| || |||| || || |||  | |||||||||| ||||| |||||||| ||||| ||||    
T  2332410 ggtcataatccaagctatacttggaggagtctttggagtact-aacatttacttaccttgtattatagatggaaaattggtgatggctctaaaattaatg 2332508  T
Q  244 tatggaccatgccttggatacgtaatct 271  Q
    | ||||  ||||||||| | ||||||||    
T  2332509 tgtggaaaatgccttggcttcgtaatct 2332536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 204
Target Start/End: Complemental strand, 24596212 - 24596131
Alignment:
Q  123 gatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgg 204  Q
    |||||||||||||||||  ||||||| |||||| |||| |||||||||||||| |||||| | |||| ||| || |||||||    
T  24596212 gatttcttggatgcaccttttggtcacaatccaagctacacatggaggagtctttggagtgcccaatctttacttactttgg 24596131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 260
Target Start/End: Complemental strand, 39695321 - 39695226
Alignment:
Q  165 tggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggagatggctcaaaaataaatgtatggaccatgccttgg 260  Q
    ||||||||||| |||||||||||| | |  || | ||||||||||| |||||| ||||| || ||||| ||||| ||||| || | ||||||||||    
T  39695321 tggaggagtctttggagtactcaacaatgacttattttgggtcatatatggaagattggtgacggctctaaaattaatgtgtgaaacatgccttgg 39695226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 4755754 - 4755709
Alignment:
Q  148 ataatccatgctatacatggaggagtctatggagtactcaatattt 193  Q
    |||||||| ||||||||||||||||||| |||||||| ||| ||||    
T  4755754 ataatccaagctatacatggaggagtctttggagtacccaaaattt 4755709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 6e-37; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 108 - 262
Target Start/End: Original strand, 14647356 - 14647510
Alignment:
Q  108 tatttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtc 207  Q
    ||||||||| | ||||| ||||||||||||||  ||| |||||||||| |||| | |||||||||||| ||||||||||||| | |||| || |||||||    
T  14647356 tatttccctcgtcgggacttcttggatgcacctcttgatcataatccaagctacatatggaggagtctttggagtactcaatctctgcttaccttgggtc 14647455  T
Q  208 atagatggaatattggagatggctcaaaaataaatgtatggaccatgccttggat 262  Q
    |||||||||| ||||||||||| |||||||||||||||||| | ||||| |||||    
T  14647456 atagatggaaaattggagatggttcaaaaataaatgtatggtctatgccatggat 14647510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 108 - 271
Target Start/End: Complemental strand, 12460128 - 12459965
Alignment:
Q  108 tatttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtc 207  Q
    ||||||||| |||||||||||||||| |||||  |||||||||||||| ||||||||||||||||||| |||||||| ||||  || || || |||||      
T  12460128 tatttccctcgacgggatttcttggaagcacctcttggtcataatccaagctatacatggaggagtctttggagtacccaatcattacttacgttgggct 12460029  T
Q  208 atagatggaatattggagatggctcaaaaataaatgtatggaccatgccttggatacgtaatct 271  Q
    |||||||||| |||||  ||||||||||||||||||| ||| | ||||||||||| || |||||    
T  12460028 atagatggaagattggtaatggctcaaaaataaatgtgtggtcaatgccttggattcgcaatct 12459965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 121 - 262
Target Start/End: Complemental strand, 13189658 - 13189517
Alignment:
Q  121 gggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatat 220  Q
    |||| |||||||||||||| ||||| ||||||||| |||| || ||||| ||||| |||||||||||| |||| || || |||||| |||||||||| ||    
T  13189658 gggacttcttggatgcacctattggccataatccaagctacacttggagaagtctttggagtactcaacatttacttaccttgggttatagatggaaaat 13189559  T
Q  221 tggagatggctcaaaaataaatgtatggaccatgccttggat 262  Q
    |||||||||||| ||||| || || || | ||||||||||||    
T  13189558 tggagatggctctaaaatcaacgtgtgaaacatgccttggat 13189517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 111 - 264
Target Start/End: Complemental strand, 51493110 - 51492957
Alignment:
Q  111 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 210  Q
    |||||||||  ||||||||||||||| ||  |||| ||||||||| ||||  |||||||| |||| ||||| ||||||| ||| || || ||||||||||    
T  51493110 ttccctagaatggatttcttggatgcccctcttggccataatccaagctacgcatggaggggtctttggagcactcaatctttacttaccttgggtcata 51493011  T
Q  211 gatggaatattggagatggctcaaaaataaatgtatggaccatgccttggatac 264  Q
    ||||||| ||||||| ||| ||||| ||||||||||||   |||||||||||||    
T  51493010 gatggaagattggagctggttcaaacataaatgtatggtatatgccttggatac 51492957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 119 - 267
Target Start/End: Original strand, 20128381 - 20128529
Alignment:
Q  119 acgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaat 218  Q
    ||||||||||||||| |||||  |||||||||||||| |||| || |||||||||||||||||||| |||| | | || || ||||| |||||||||||     
T  20128381 acgggatttcttggaagcacctcttggtcataatccaagctacacttggaggagtctatggagtacccaatctcttcttaccttgggacatagatggaag 20128480  T
Q  219 attggagatggctcaaaaataaatgtatggaccatgccttggatacgta 267  Q
    ||||| |||||| ||||||| ||| | ||||  ||||||||||| ||||    
T  20128481 attggtgatggcacaaaaattaatatgtggagtatgccttggattcgta 20128529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 121 - 262
Target Start/End: Complemental strand, 27644689 - 27644548
Alignment:
Q  121 gggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatat 220  Q
    ||||||||||||||||  |  |||||||||||||| ||||||| ||||||||||| |||||||| ||  | ||||| || || || || || ||||| ||    
T  27644689 gggatttcttggatgcctctcttggtcataatccaagctatacttggaggagtctttggagtacccagcacttgcttaccttaggacacaggtggaagat 27644590  T
Q  221 tggagatggctcaaaaataaatgtatggaccatgccttggat 262  Q
    |||| |||| || ||||||||||| ||||| |||||||||||    
T  27644589 tggaaatggttccaaaataaatgtgtggactatgccttggat 27644548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 224
Target Start/End: Original strand, 50181614 - 50181688
Alignment:
Q  150 aatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattgga 224  Q
    |||||| | |||||||||||||||||||||||||| |||| ||| || || || || ||||||||||| ||||||    
T  50181614 aatccaagttatacatggaggagtctatggagtacgcaatctttacttaccttaggccatagatggaagattgga 50181688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 260
Target Start/End: Original strand, 44138466 - 44138618
Alignment:
Q  108 tatttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtc 207  Q
    ||||||||  || |||||||||||||||| ||  | || ||||||||| |||| || ||||| || ||||||||| | ||| |||| || || ||||| |    
T  44138466 tatttcccgcgaagggatttcttggatgcccctctcggccataatccaagctacacctggagaagcctatggagtgcacaacatttacttaccttgggac 44138565  T
Q  208 atagatggaatattggagatggctcaaaaataaatgtatggaccatgccttgg 260  Q
    |||||||||| |||||  |||| |||| ||| || || |||| || |||||||    
T  44138566 atagatggaagattggttatggttcaagaattaaagtgtggagcacgccttgg 44138618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 229
Target Start/End: Original strand, 27465617 - 27465688
Alignment:
Q  158 ctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggagatgg 229  Q
    |||||| |||| |||||||||||||||||||| ||| || | ||||||||||  |||||| ||||| |||||    
T  27465617 ctatacttggaagagtctatggagtactcaatctttacttattttgggtcatgaatggaaaattggtgatgg 27465688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0703 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0703
Description:

Target: scaffold0703; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 108 - 271
Target Start/End: Complemental strand, 1020 - 857
Alignment:
Q  108 tatttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtc 207  Q
    ||||||||| |||||||||||||||| |||||  |||||||||||||| ||||||||||||||||||| |||||||  ||||  || || || |||||      
T  1020 tatttccctcgacgggatttcttggaagcacctcttggtcataatccaagctatacatggaggagtctttggagtatccaatcattacttacgttgggct 921  T
Q  208 atagatggaatattggagatggctcaaaaataaatgtatggaccatgccttggatacgtaatct 271  Q
    |||||||||| |||||  |||| ||||| |||||||| ||| | ||||||||||| || |||||    
T  920 atagatggaagattggtaatggttcaaatataaatgtgtggtcaatgccttggattcgcaatct 857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 5e-28; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 111 - 262
Target Start/End: Original strand, 46598537 - 46598688
Alignment:
Q  111 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 210  Q
    |||||||||||||| |||||||||||| |  | |||||||||||| ||||||| ||||||||  ||||||||||||||| ||| || |||||||| ||||    
T  46598537 ttccctagacgggacttcttggatgcaaccctcggtcataatccaagctatacctggaggagcttatggagtactcaatctttacttactttgggccata 46598636  T
Q  211 gatggaatattggagatggctcaaaaataaatgtatggaccatgccttggat 262  Q
    ||||||| ||||||||||| || || || ||||| ||||  ||||| |||||    
T  46598637 gatggaagattggagatggttctaagattaatgtgtggagtatgccgtggat 46598688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 111 - 262
Target Start/End: Original strand, 31801220 - 31801371
Alignment:
Q  111 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 210  Q
    |||||||||| ||| |||||||||||  |  | |||||||||||| ||||||| ||||||||  ||||||||||||||| ||| || |||||||| ||||    
T  31801220 ttccctagactggacttcttggatgctaccctcggtcataatccaagctatacttggaggagcttatggagtactcaatctttacttactttgggccata 31801319  T
Q  211 gatggaatattggagatggctcaaaaataaatgtatggaccatgccttggat 262  Q
    ||||||| ||||||||||| || || || ||||| ||||  ||||| |||||    
T  31801320 gatggaagattggagatggttctaagattaatgtgtggagtatgccgtggat 31801371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 111 - 217
Target Start/End: Original strand, 512590 - 512696
Alignment:
Q  111 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 210  Q
    |||||||||||||| |||||||||||| |  | |||||||||||| ||||||| || |||||  ||||||||||||||| ||| || |||||||| ||||    
T  512590 ttccctagacgggacttcttggatgcaaccctcggtcataatccaagctatacctgaaggagcttatggagtactcaatctttacttactttgggccata 512689  T
Q  211 gatggaa 217  Q
    |||||||    
T  512690 gatggaa 512696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 144 - 262
Target Start/End: Complemental strand, 12352046 - 12351928
Alignment:
Q  144 ggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggagatggctcaaaaataaatg 243  Q
    |||||||||||| | || |||||||||||||||||||||||||||| ||| || || ||||| ||||| ||||| |||||||| |||||  |||| ||||    
T  12352046 ggtcataatccaagttacacatggaggagtctatggagtactcaatctttacttaccttgggccatagctggaaaattggagacggctctcaaattaatg 12351947  T
Q  244 tatggaccatgccttggat 262  Q
    | ||||  |||||||||||    
T  12351946 tgtggagtatgccttggat 12351928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 121 - 268
Target Start/End: Original strand, 43968796 - 43968943
Alignment:
Q  121 gggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatat 220  Q
    ||||||||||||||||  |  | |||||||||||| ||| ||| || |||||||| |||||||||||| ||||||| ||||||||| ||| |||||| ||    
T  43968796 gggatttcttggatgcctccctcggtcataatccaagctttacttgaaggagtctttggagtactcaacatttgcttactttgggttatatatggaaaat 43968895  T
Q  221 tggagatggctcaaaaataaatgtatggaccatgccttggatacgtaa 268  Q
    ||| ||     ||||||| ||||| ||||  ||||||||||| |||||    
T  43968896 tggtgacaatacaaaaattaatgtctggaatatgccttggatccgtaa 43968943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 262
Target Start/End: Original strand, 41146525 - 41146643
Alignment:
Q  144 ggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggagatggctcaaaaataaatg 243  Q
    |||||||||||| | || |||||||||||||||||||||||||||| ||| || || ||||| ||||| ||||| |||||||| || ||   ||| ||||    
T  41146525 ggtcataatccaagttacacatggaggagtctatggagtactcaatctttacttaccttgggccataggtggaaaattggagacggttccctaattaatg 41146624  T
Q  244 tatggaccatgccttggat 262  Q
    | ||||  |||||||||||    
T  41146625 tgtggagtatgccttggat 41146643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 108 - 244
Target Start/End: Complemental strand, 18222834 - 18222698
Alignment:
Q  108 tatttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtc 207  Q
    ||||||||  || ||||||||||||||||  |  | || ||||||||| ||||||| ||||||||||| ||||||| |||||  || || || ||||| |    
T  18222834 tatttcccgcgaagggatttcttggatgcctctctcggccataatccaagctatacttggaggagtctttggagtattcaatcattacttaccttggggc 18222735  T
Q  208 atagatggaatattggagatggctcaaaaataaatgt 244  Q
    |||||||||| |||||||| ||  | |||||||||||    
T  18222734 atagatggaagattggagacggtactaaaataaatgt 18222698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 222
Target Start/End: Original strand, 31402552 - 31402662
Alignment:
Q  112 tccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatag 211  Q
    |||||||| ||||| ||| |||||||   ||||||||||||||| ||| ||||||||||||  | |||||| | ||| |  |  ||||||||||| ||||    
T  31402552 tccctagaagggatatctcggatgcaaatattggtcataatccaagctttacatggaggagcatttggagttcccaaaaccttatcactttgggttatag 31402651  T
Q  212 atggaatattg 222  Q
    |||||| ||||    
T  31402652 atggaagattg 31402662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 8e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 111 - 248
Target Start/End: Complemental strand, 21731170 - 21731033
Alignment:
Q  111 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 210  Q
    |||||| | ||||| ||||||||||||||  |||||||||||||| |||| | |||||||||||| ||||||||||||| | | || || ||||| ||||    
T  21731170 ttccctcgtcgggacttcttggatgcacctcttggtcataatccaagctacatatggaggagtctttggagtactcaatctcttcttaccttgggccata 21731071  T
Q  211 gatggaatattggagatggctcaaaaataaatgtatgg 248  Q
    ||||||| ||| |||| || ||||||||||||||||||    
T  21731070 gatggaaaattagagacggttcaaaaataaatgtatgg 21731033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 108 - 271
Target Start/End: Original strand, 16861976 - 16862139
Alignment:
Q  108 tatttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtc 207  Q
    ||||||||| |||||||||||||||| |||||  |||||||||||||| |||| |||||||||||||| |||||||  ||||  || || || |||||      
T  16861976 tatttccctcgacgggatttcttggaagcacctcttggtcataatccaagctacacatggaggagtctttggagtaaccaatcattacttacgttgggct 16862075  T
Q  208 atagatggaatattggagatggctcaaaaataaatgtatggaccatgccttggatacgtaatct 271  Q
    |||||||||| |||||  |||| ||||| |||||||| ||| | ||||||||||| || |||||    
T  16862076 atagatggaagattggtaatggttcaaatataaatgtgtggccaatgccttggattcgcaatct 16862139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 217
Target Start/End: Complemental strand, 10160261 - 10160191
Alignment:
Q  147 cataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaa 217  Q
    ||||||||| | |||||||||||||||||||||||||| |||| ||| || || |||||||||||||||||    
T  10160261 cataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaa 10160191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 111 - 263
Target Start/End: Complemental strand, 54422752 - 54422600
Alignment:
Q  111 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 210  Q
    ||||| || |||||||||||||| ||||   ||||||| |||||| |||| || || ||||||||||||||| | |||| | |||| || ||||| ||||    
T  54422752 ttcccgaggcgggatttcttggaagcacgtcttggtcacaatccaagctacacttgaaggagtctatggagtgcccaatctctgcttaccttggggcata 54422653  T
Q  211 gatggaatattggagatggctcaaaaataaatgtatggaccatgccttggata 263  Q
    ||||||| || || |||||||||||||| ||| | ||||  ||||||||||||    
T  54422652 gatggaagatcggtgatggctcaaaaattaatatgtggagtatgccttggata 54422600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 262
Target Start/End: Original strand, 32498317 - 32498435
Alignment:
Q  144 ggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggagatggctcaaaaataaatg 243  Q
    |||||||||||| | || |||||||||||||||||||||||||||| ||| || || ||||| ||||| ||||| |||||||| || ||   ||| ||||    
T  32498317 ggtcataatccaagttacacatggaggagtctatggagtactcaatctttacttaccttgggccataggtggaaaattggagacggttccctaattaatg 32498416  T
Q  244 tatggaccatgccttggat 262  Q
    | ||||  |||||||||||    
T  32498417 tgtggagtatgccttggat 32498435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 188
Target Start/End: Original strand, 29016903 - 29016980
Alignment:
Q  111 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaa 188  Q
    ||||||||| |||||||||||||| | |  |||||||| |||||| ||||||| ||||||||  |||||||| |||||    
T  29016903 ttccctagaagggatttcttggattcccgtattggtcacaatccaagctatacttggaggagcatatggagttctcaa 29016980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 223
Target Start/End: Original strand, 43732685 - 43732766
Alignment:
Q  142 ttggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattgg 223  Q
    |||||||||||||| |||| || ||||| ||||| |||||| | ||| | ||  | |||||||||||||||||||| |||||    
T  43732685 ttggtcataatccaagctacacttggagaagtctttggagtgcccaacacttagttactttgggtcatagatggaagattgg 43732766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 217
Target Start/End: Complemental strand, 9182037 - 9181967
Alignment:
Q  147 cataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaa 217  Q
    ||||||||| | |||||||||||||||||||||||||| |||| ||| || || |||||||||||||||||    
T  9182037 cataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaa 9181967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 217
Target Start/End: Original strand, 11626236 - 11626306
Alignment:
Q  147 cataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaa 217  Q
    ||||||||| | |||||||||||||||||||||||||| |||| ||| || || |||||||||||||||||    
T  11626236 cataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaa 11626306  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 217
Target Start/End: Complemental strand, 29929738 - 29929639
Alignment:
Q  118 gacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaa 217  Q
    |||||||||||||||| |  ||  |||||||||||||| || | || || |||||||| |||||||   || | ||||| ||||||||||||||||||||    
T  29929738 gacgggatttcttggacgaccctcttggtcataatccaagcaacacttgcaggagtctttggagtatctaacacttgcttactttgggtcatagatggaa 29929639  T

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Target: scaffold0007 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 229
Target Start/End: Complemental strand, 189684 - 189602
Alignment:
Q  147 cataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggagatgg 229  Q
    ||||||||| | | ||||||||||||||| | ||||||||||| ||| ||||| ||||| ||||||||||  ||||| |||||    
T  189684 cataatccaagttttacatggaggagtcttttgagtactcaatctttactcaccttgggacatagatggatgattggtgatgg 189602  T

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Target: scaffold0010 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 262
Target Start/End: Complemental strand, 238036 - 237882
Alignment:
Q  108 tatttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtc 207  Q
    ||||||||| | |||||||||||||||||    ||||| || |||||| |||  || ||||||||  |||||||| |||||| | | || || |||||      
T  238036 tatttccctcgtcgggatttcttggatgccaatattggccacaatccaagcttcacttggaggagcatatggagttctcaatctcttctaaccttgggct 237937  T
Q  208 atagatggaatattggagatggctcaaaaataaatgtatggaccatgccttggat 262  Q
    |||||||||| ||||| || || || ||||| ||||| ||| ||||||| |||||    
T  237936 atagatggaagattggtgacggttcgaaaatcaatgtttggtccatgccatggat 237882  T

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