View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8427_high_10 (Length: 345)
Name: NF8427_high_10
Description: NF8427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8427_high_10 |
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| [»] scaffold0459 (1 HSPs) |
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| [»] scaffold0366 (1 HSPs) |
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Alignment Details
Target: scaffold0459 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 15 - 325
Target Start/End: Original strand, 5550 - 5860
Alignment:
| Q |
15 |
aatactatatgtttgaatggtactgactcaacaaaggaagcatgatcaccttccaacaacctgcaaggataggtttggctttagaaccagaaatcaatga |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5550 |
aatactatatgtttgaatggtactgactcaacaaaggaagcatgatcaccttccaacaacctgcaaggataggtttggctttagaaccagaaatcaatga |
5649 |
T |
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| Q |
115 |
caaccgacacttcagaataaagatgtgtccggtatccgatgtgtgaatgtcgtgttcggtgtttgtgtctatttcaatgcttcatgtctattttgttaaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5650 |
caaccgacacttcagaataaagatgtgtccggtatccgatgtgtgaatgtcgtgttcggtgtttgtgtctatttcaatgcttcatgtctattttgttaaa |
5749 |
T |
|
| Q |
215 |
atggtgaaatcaaagtaactttcacttacttgtaccatctactaggtcttacaaaaagaagcaatatcctttcccaaaactgattccctggaagactatc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5750 |
atggtgaaatcaaagtaactttcacttacttgtaccatctactaggtcttacaaaaagaagcaatatcctttcccaaaactgattccctggaagactatc |
5849 |
T |
|
| Q |
315 |
aatagccatgt |
325 |
Q |
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||||||||||| |
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| T |
5850 |
aatagccatgt |
5860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 15 - 325
Target Start/End: Original strand, 5550 - 5860
Alignment:
| Q |
15 |
aatactatatgtttgaatggtactgactcaacaaaggaagcatgatcaccttccaacaacctgcaaggataggtttggctttagaaccagaaatcaatga |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5550 |
aatactatatgtttgaatggtactgactcaacaaaggaagcatgatcaccttccaacaacctgcaaggataggtttggctttagaaccagaaatcaatga |
5649 |
T |
|
| Q |
115 |
caaccgacacttcagaataaagatgtgtccggtatccgatgtgtgaatgtcgtgttcggtgtttgtgtctatttcaatgcttcatgtctattttgttaaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5650 |
caaccgacacttcagaataaagatgtgtccggtatccgatgtgtgaatgtcgtgttcggtgtttgtgtctatttcaatgcttcatgtctattttgttaaa |
5749 |
T |
|
| Q |
215 |
atggtgaaatcaaagtaactttcacttacttgtaccatctactaggtcttacaaaaagaagcaatatcctttcccaaaactgattccctggaagactatc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5750 |
atggtgaaatcaaagtaactttcacttacttgtaccatctactaggtcttacaaaaagaagcaatatcctttcccaaaactgattccctggaagactatc |
5849 |
T |
|
| Q |
315 |
aatagccatgt |
325 |
Q |
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||||||||||| |
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| T |
5850 |
aatagccatgt |
5860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 268 - 323
Target Start/End: Complemental strand, 2235423 - 2235368
Alignment:
| Q |
268 |
aaaagaagcaatatcctttcccaaaactgattccctggaagactatcaatagccat |
323 |
Q |
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|||||||||||||||||||||||||| || |||||||| ||||||||||| ||||| |
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| T |
2235423 |
aaaagaagcaatatcctttcccaaaattggttccctgggagactatcaattgccat |
2235368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 265 - 325
Target Start/End: Original strand, 49706439 - 49706499
Alignment:
| Q |
265 |
acaaaaagaagcaatatcctttcccaaaactgattccctggaagactatcaatagccatgt |
325 |
Q |
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||||| || ||||||||||||||||| ||||||||||| ||||||||||| || ||||||| |
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| T |
49706439 |
acaaagaggagcaatatcctttcccagaactgattccccggaagactatctattgccatgt |
49706499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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