View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8427_high_14 (Length: 305)

Name: NF8427_high_14
Description: NF8427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8427_high_14
NF8427_high_14
[»] chr5 (37 HSPs)
chr5 (1-289)||(38055932-38056207)
chr5 (180-236)||(29046025-29046081)
chr5 (177-236)||(6476790-6476849)
chr5 (188-245)||(235596-235653)
chr5 (181-246)||(19128767-19128832)
chr5 (181-236)||(28705878-28705933)
chr5 (180-230)||(234697-234747)
chr5 (180-234)||(29087921-29087975)
chr5 (188-245)||(236919-236976)
chr5 (181-230)||(237826-237875)
chr5 (181-230)||(19359701-19359750)
chr5 (180-236)||(4084876-4084932)
chr5 (188-232)||(7632099-7632143)
chr5 (192-236)||(10554555-10554599)
chr5 (182-246)||(14478919-14478983)
chr5 (188-236)||(27364486-27364534)
chr5 (189-236)||(28705170-28705217)
chr5 (188-246)||(17071228-17071286)
chr5 (188-246)||(34600265-34600323)
chr5 (181-230)||(19360481-19360530)
chr5 (186-243)||(20854897-20854954)
chr5 (188-232)||(1281840-1281884)
chr5 (192-232)||(1283503-1283543)
chr5 (188-232)||(1554086-1554130)
chr5 (188-227)||(1283533-1283572)
chr5 (188-227)||(10554526-10554565)
chr5 (188-231)||(25858214-25858257)
chr5 (4-136)||(38051096-38051233)
chr5 (188-246)||(17071783-17071841)
chr5 (189-239)||(22799756-22799806)
chr5 (196-230)||(27363779-27363813)
chr5 (188-234)||(34709038-34709084)
chr5 (188-234)||(36038699-36038745)
chr5 (177-246)||(34600820-34600889)
chr5 (188-232)||(22798905-22798949)
chr5 (180-232)||(33005517-33005569)
chr5 (188-236)||(38056798-38056846)
[»] chr6 (19 HSPs)
chr6 (180-289)||(11434403-11434512)
chr6 (212-289)||(4940196-4940273)
chr6 (180-245)||(26529503-26529568)
chr6 (181-245)||(10171273-10171337)
chr6 (188-246)||(12344898-12344956)
chr6 (188-248)||(10171953-10172013)
chr6 (188-248)||(26528827-26528887)
chr6 (181-239)||(19310998-19311056)
chr6 (188-236)||(8488473-8488521)
chr6 (188-236)||(19323766-19323814)
chr6 (191-234)||(19322990-19323033)
chr6 (182-232)||(19311830-19311880)
chr6 (182-232)||(33436277-33436327)
chr6 (177-234)||(9441230-9441287)
chr6 (181-236)||(18227729-18227783)
chr6 (188-239)||(33435344-33435395)
chr6 (188-246)||(3623179-3623237)
chr6 (181-231)||(8489284-8489334)
chr6 (192-236)||(5861894-5861938)
[»] chr7 (46 HSPs)
chr7 (188-286)||(3772476-3772574)
chr7 (188-289)||(45931164-45931265)
chr7 (177-236)||(26636096-26636155)
chr7 (188-272)||(30661419-30661503)
chr7 (188-272)||(37949609-37949693)
chr7 (181-236)||(46428184-46428239)
chr7 (182-236)||(7668480-7668534)
chr7 (181-235)||(25599019-25599073)
chr7 (188-236)||(25342501-25342549)
chr7 (188-236)||(25343307-25343355)
chr7 (180-259)||(25343216-25343295)
chr7 (182-236)||(26636860-26636914)
chr7 (188-234)||(30660597-30660643)
chr7 (188-234)||(37950469-37950515)
chr7 (181-230)||(45099899-45099948)
chr7 (188-232)||(13785597-13785641)
chr7 (182-286)||(18977720-18977823)
chr7 (188-236)||(19067641-19067689)
chr7 (188-236)||(24389616-24389664)
chr7 (188-236)||(27948450-27948498)
chr7 (188-232)||(43065120-43065164)
chr7 (188-239)||(45161973-45162024)
chr7 (194-236)||(3027984-3028026)
chr7 (180-234)||(46428819-46428873)
chr7 (182-235)||(3903340-3903393)
chr7 (179-236)||(40273555-40273612)
chr7 (188-232)||(1417612-1417656)
chr7 (188-236)||(3029198-3029246)
chr7 (188-236)||(16664125-16664173)
chr7 (188-236)||(17638485-17638533)
chr7 (188-236)||(19068395-19068443)
chr7 (188-236)||(21496983-21497031)
chr7 (188-232)||(38225979-38226023)
chr7 (188-232)||(47719708-47719752)
chr7 (188-235)||(24719339-24719386)
chr7 (188-231)||(31278159-31278202)
chr7 (188-246)||(3219536-3219594)
chr7 (188-234)||(14686135-14686181)
chr7 (188-230)||(37395505-37395547)
chr7 (181-231)||(38225297-38225347)
chr7 (181-234)||(25599821-25599874)
chr7 (188-232)||(3688388-3688432)
chr7 (188-232)||(14305094-14305138)
chr7 (192-232)||(24453730-24453770)
chr7 (194-230)||(31277433-31277469)
chr7 (180-236)||(37706424-37706480)
[»] scaffold0086 (1 HSPs)
scaffold0086 (188-289)||(8238-8339)
[»] chr4 (54 HSPs)
chr4 (181-289)||(53148559-53148666)
chr4 (177-236)||(47785799-47785858)
chr4 (188-246)||(47688469-47688527)
chr4 (188-246)||(53732440-53732498)
chr4 (181-246)||(8248510-8248575)
chr4 (181-246)||(8266175-8266240)
chr4 (180-257)||(30573688-30573765)
chr4 (180-236)||(9365166-9365222)
chr4 (181-236)||(20774180-20774235)
chr4 (180-246)||(8247693-8247759)
chr4 (177-230)||(2444366-2444419)
chr4 (203-272)||(7841811-7841880)
chr4 (192-236)||(16903643-16903687)
chr4 (180-236)||(24374786-24374842)
chr4 (188-236)||(26147032-26147080)
chr4 (188-248)||(32089601-32089661)
chr4 (188-248)||(56262483-56262543)
chr4 (188-235)||(599302-599349)
chr4 (185-236)||(40348143-40348194)
chr4 (188-231)||(52871303-52871346)
chr4 (189-232)||(55976172-55976215)
chr4 (188-246)||(8265366-8265424)
chr4 (190-248)||(9365804-9365862)
chr4 (181-231)||(31329722-31329772)
chr4 (189-243)||(53733125-53733179)
chr4 (188-230)||(53772812-53772854)
chr4 (188-246)||(55001430-55001488)
chr4 (201-246)||(5046002-5046047)
chr4 (181-234)||(7841542-7841595)
chr4 (182-231)||(44469491-44469540)
chr4 (188-236)||(11938716-11938764)
chr4 (188-236)||(19080390-19080438)
chr4 (197-245)||(53733722-53733770)
chr4 (188-232)||(53773590-53773634)
chr4 (188-231)||(3654520-3654563)
chr4 (181-232)||(24158824-24158875)
chr4 (188-231)||(42882686-42882729)
chr4 (197-232)||(55976959-55976994)
chr4 (188-234)||(2446163-2446209)
chr4 (181-227)||(16903677-16903723)
chr4 (188-230)||(19550291-19550333)
chr4 (192-234)||(43146650-43146692)
chr4 (188-246)||(47687914-47687972)
chr4 (197-287)||(56263022-56263111)
chr4 (188-245)||(7842520-7842577)
chr4 (181-234)||(40495093-40495146)
chr4 (180-236)||(1465317-1465373)
chr4 (188-236)||(1866348-1866396)
chr4 (188-236)||(11939441-11939489)
chr4 (188-232)||(24551927-24551971)
chr4 (188-236)||(26159621-26159669)
chr4 (199-231)||(32088835-32088867)
chr4 (188-236)||(53147876-53147924)
chr4 (188-232)||(55000692-55000736)
[»] chr3 (42 HSPs)
chr3 (203-287)||(44699881-44699965)
chr3 (181-248)||(52266441-52266508)
chr3 (182-235)||(265099-265152)
chr3 (180-236)||(46150729-46150785)
chr3 (188-247)||(31974656-31974715)
chr3 (197-272)||(48413333-48413407)
chr3 (177-248)||(48507020-48507091)
chr3 (181-232)||(48648201-48648252)
chr3 (180-234)||(14871150-14871204)
chr3 (192-245)||(17605715-17605768)
chr3 (188-232)||(17603173-17603217)
chr3 (188-232)||(21727533-21727577)
chr3 (182-236)||(31114943-31114994)
chr3 (180-236)||(41458030-41458086)
chr3 (189-236)||(981673-981720)
chr3 (181-236)||(45081403-45081458)
chr3 (180-230)||(55373712-55373762)
chr3 (186-231)||(11652296-11652341)
chr3 (177-230)||(30222104-30222157)
chr3 (183-236)||(37520561-37520614)
chr3 (181-234)||(37988220-37988273)
chr3 (181-230)||(52605489-52605538)
chr3 (181-257)||(48764475-48764551)
chr3 (188-231)||(10847914-10847957)
chr3 (197-236)||(13477778-13477817)
chr3 (197-232)||(17603965-17604000)
chr3 (180-231)||(20213536-20213587)
chr3 (188-235)||(31115600-31115647)
chr3 (185-248)||(48506440-48506502)
chr3 (189-248)||(52282400-52282459)
chr3 (181-231)||(13477055-13477105)
chr3 (189-231)||(20212986-20213028)
chr3 (188-230)||(37987238-37987280)
chr3 (188-230)||(40872814-40872856)
chr3 (182-232)||(48765074-48765124)
chr3 (182-232)||(51827498-51827548)
chr3 (178-236)||(52281761-52281819)
chr3 (203-236)||(29856683-29856716)
chr3 (197-230)||(44699826-44699859)
chr3 (183-232)||(48649177-48649226)
chr3 (188-232)||(46149634-46149678)
chr3 (188-232)||(51469283-51469327)
[»] chr8 (25 HSPs)
chr8 (188-289)||(3291483-3291581)
chr8 (181-246)||(26654367-26654432)
chr8 (181-234)||(41974638-41974691)
chr8 (188-236)||(38576301-38576349)
chr8 (177-246)||(22320368-22320437)
chr8 (181-232)||(3165125-3165176)
chr8 (177-232)||(31641505-31641560)
chr8 (180-230)||(8373698-8373748)
chr8 (188-242)||(31602021-31602075)
chr8 (182-268)||(37064815-37064900)
chr8 (180-229)||(37732823-37732872)
chr8 (201-245)||(8298265-8298309)
chr8 (181-257)||(31642065-31642141)
chr8 (188-232)||(32414527-32414571)
chr8 (181-236)||(8996973-8997028)
chr8 (188-230)||(8372918-8372960)
chr8 (189-231)||(9197101-9197143)
chr8 (198-232)||(11686241-11686275)
chr8 (181-231)||(26652291-26652341)
chr8 (177-231)||(32979828-32979882)
chr8 (191-261)||(38628258-38628328)
chr8 (188-248)||(45907-45967)
chr8 (188-232)||(27441471-27441515)
chr8 (188-232)||(28929850-28929894)
chr8 (188-236)||(37025011-37025058)
[»] chr1 (38 HSPs)
chr1 (180-261)||(13263491-13263572)
chr1 (192-243)||(46812180-46812231)
chr1 (180-232)||(25469090-25469142)
chr1 (180-236)||(30663354-30663410)
chr1 (188-236)||(34309230-34309278)
chr1 (188-235)||(4433848-4433895)
chr1 (181-236)||(30663976-30664031)
chr1 (188-234)||(49680815-49680861)
chr1 (181-230)||(37853141-37853190)
chr1 (181-249)||(7406242-7406310)
chr1 (188-236)||(10121552-10121600)
chr1 (188-236)||(13262837-13262885)
chr1 (181-257)||(25468507-25468583)
chr1 (188-244)||(28181537-28181593)
chr1 (188-236)||(30932795-30932843)
chr1 (188-235)||(4439207-4439254)
chr1 (181-236)||(8987787-8987842)
chr1 (177-236)||(34308466-34308525)
chr1 (188-234)||(7559201-7559247)
chr1 (181-231)||(19172580-19172630)
chr1 (188-246)||(28182062-28182120)
chr1 (188-236)||(168894-168942)
chr1 (188-236)||(8988548-8988596)
chr1 (188-236)||(27256712-27256760)
chr1 (182-246)||(36389773-36389837)
chr1 (188-232)||(47967866-47967910)
chr1 (188-231)||(10120787-10120830)
chr1 (188-235)||(11548804-11548851)
chr1 (188-231)||(17172667-17172710)
chr1 (188-231)||(24991974-24992017)
chr1 (199-242)||(32038492-32038535)
chr1 (188-234)||(7558453-7558499)
chr1 (188-234)||(11704810-11704856)
chr1 (188-230)||(17171935-17171977)
chr1 (188-230)||(45818025-45818067)
chr1 (188-222)||(46391880-46391914)
chr1 (201-246)||(23026600-23026645)
chr1 (188-236)||(169627-169675)
[»] chr2 (35 HSPs)
chr2 (177-273)||(22560530-22560626)
chr2 (180-259)||(1296376-1296455)
chr2 (181-259)||(9276306-9276384)
chr2 (188-236)||(1297122-1297170)
chr2 (188-236)||(9275591-9275639)
chr2 (188-236)||(29719451-29719499)
chr2 (178-236)||(36237626-36237684)
chr2 (186-231)||(40252025-40252070)
chr2 (188-236)||(11750262-11750310)
chr2 (181-245)||(29512369-29512433)
chr2 (188-246)||(18174659-18174717)
chr2 (180-246)||(42459048-42459114)
chr2 (182-239)||(23343778-23343835)
chr2 (191-236)||(42182614-42182659)
chr2 (188-236)||(8669195-8669243)
chr2 (188-232)||(9540336-9540380)
chr2 (188-236)||(12725614-12725662)
chr2 (188-232)||(15902885-15902929)
chr2 (188-232)||(22301873-22301917)
chr2 (182-234)||(24754995-24755047)
chr2 (188-232)||(29513150-29513194)
chr2 (197-236)||(8542547-8542586)
chr2 (197-236)||(11007245-11007284)
chr2 (197-232)||(16692977-16693012)
chr2 (188-235)||(29559420-29559467)
chr2 (188-246)||(18174104-18174162)
chr2 (178-236)||(24933831-24933889)
chr2 (188-230)||(27177917-27177959)
chr2 (181-234)||(24121291-24121344)
chr2 (188-236)||(15774207-15774255)
chr2 (181-245)||(19918712-19918776)
chr2 (188-236)||(23856640-23856688)
chr2 (188-232)||(26752726-26752770)
chr2 (183-231)||(34812860-34812908)
chr2 (192-236)||(38361076-38361120)
[»] scaffold0176 (1 HSPs)
scaffold0176 (181-236)||(26589-26644)
[»] scaffold0093 (1 HSPs)
scaffold0093 (177-236)||(23728-23787)
[»] scaffold2007 (1 HSPs)
scaffold2007 (181-235)||(748-802)
[»] scaffold0085 (4 HSPs)
scaffold0085 (188-230)||(22076-22118)
scaffold0085 (181-236)||(15020-15075)
scaffold0085 (197-236)||(15858-15897)
scaffold0085 (182-236)||(15080-15134)
[»] scaffold0504 (1 HSPs)
scaffold0504 (181-230)||(5385-5434)
[»] scaffold0096 (1 HSPs)
scaffold0096 (189-230)||(39901-39942)
[»] scaffold1213 (1 HSPs)
scaffold1213 (181-237)||(1893-1949)
[»] scaffold0002 (1 HSPs)
scaffold0002 (180-236)||(428901-428957)
[»] scaffold0418 (1 HSPs)
scaffold0418 (181-234)||(6886-6939)
[»] scaffold1207 (1 HSPs)
scaffold1207 (188-236)||(1591-1639)


Alignment Details
Target: chr5 (Bit Score: 141; Significance: 6e-74; HSPs: 37)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 38055932 - 38056207
Alignment:
Q  1 actttcaaatattgttgtcagaagaatttaggtaatcatctcactatactagtttttgaggtacgttttgcttaattttctct-attacattcatctaaa 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||    
T  38055932 actttcaaatattgttgtcagaagaatttaggtaatcatctcactatactag-ttttgaggtatgttttgcttaattttctctgattacattcatctaaa 38056030  T
Q  100 tttgtttctattgaacaaaataacaaaaatcaattgannnnnnnnatttcaaattaattgatcttnnnnnnnnnnnngagagagtcatgatccgttaaca 199  Q
    ||||||| |||||||||||||||| ||||||||||||        ||||||||||||||||||||             | | ||||||||||| |||||     
T  38056031 tttgtttttattgaacaaaataac-aaaatcaattga-tttttttatttcaaattaattgatctttatatat------atatagtcatgatccattaac- 38056121  T
Q  200 ccaggtgtcaacggattcgttgataccaaatctcaactgtctattttttaaaatcaaaagcttataattgtttactaaatcaactcacat 289  Q
        ||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  38056122 ----gtgtcaacggattcgttgataccaaatctcaaccgtctatttttaaaaatcaaaggcttataattgtttactaaatcaactcacat 38056207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 29046025 - 29046081
Alignment:
Q  180 agagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    ||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||    
T  29046025 agagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaac 29046081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 177 - 236
Target Start/End: Complemental strand, 6476849 - 6476790
Alignment:
Q  177 gagagagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    ||||||| || |||||||| |||||||||||||||||||||||||| |||||||||||||    
T  6476849 gagagagacaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaac 6476790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 235596 - 235653
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctattt 245  Q
    ||||| || |||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  235596 gatccattgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgtctattt 235653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 181 - 246
Target Start/End: Original strand, 19128767 - 19128832
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctatttt 246  Q
    |||||| |||||||| |||||||||||||||||||||||||| ||||||||| ||| || ||||||    
T  19128767 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatcttaaccgtttatttt 19128832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 28705933 - 28705878
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||| |||||||| |||||||||||||||||||||||||| || ||||||||||    
T  28705933 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacactaaatctcaac 28705878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 234697 - 234747
Alignment:
Q  180 agagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaat 230  Q
    ||||||| |||||||| |||||||||||||||||||||||||| |||||||    
T  234697 agagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaat 234747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 29087921 - 29087975
Alignment:
Q  180 agagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctca 234  Q
    ||||||| |||||||| ||||||||||||||||||||| |||| |||||||||||    
T  29087921 agagtcaggatccgttgacaccaggtgtcaacggattcattgacaccaaatctca 29087975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 236976 - 236919
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctattt 245  Q
    ||||| || ||||||||||||||||||||||| || ||||||||||||| ||||||||    
T  236976 gatccattgacaccaggtgtcaacggattcgtagacaccaaatctcaaccgtctattt 236919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 237875 - 237826
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaat 230  Q
    |||||| |||||||| |||||||||||||||||||||||||| |||||||    
T  237875 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaat 237826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 19359701 - 19359750
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaat 230  Q
    |||||| |||||||| |||||||||||||||||||||||||| |||||||    
T  19359701 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaat 19359750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 4084876 - 4084932
Alignment:
Q  180 agagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    ||||||| |||||||| ||||| |||||||||| ||||||||| |||||||||||||    
T  4084876 agagtcaggatccgttgacacctggtgtcaacgaattcgttgacaccaaatctcaac 4084932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 7632099 - 7632143
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatct 232  Q
    |||||||| |||||||||||||||||||||||||| |||||||||    
T  7632099 gatccgttgacaccaggtgtcaacggattcgttgacaccaaatct 7632143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 10554555 - 10554599
Alignment:
Q  192 cgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||| |||||||||||||||||||||||||| |||||||||||||    
T  10554555 cgttgacaccaggtgtcaacggattcgttgacaccaaatctcaac 10554599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 14478919 - 14478983
Alignment:
Q  182 agtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctatttt 246  Q
    ||||| |||||||| ||| |||||||||||||||||||||| ||||||| | || ||||||||||    
T  14478919 agtcaggatccgttgacatcaggtgtcaacggattcgttgacaccaaattttaattgtctatttt 14478983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 27364534 - 27364486
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||||| |||||||||||||| ||||||||||| |||||||||||||    
T  27364534 gatccgttgacaccaggtgtcaatggattcgttgacaccaaatctcaac 27364486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 236
Target Start/End: Original strand, 28705170 - 28705217
Alignment:
Q  189 atccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    ||||||| |||||||||||||||||||||||| | |||||||||||||    
T  28705170 atccgttgacaccaggtgtcaacggattcgtttacaccaaatctcaac 28705217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 17071228 - 17071286
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctatttt 246  Q
    |||||||| ||| |||||||||||| ||||||||| ||||||||||||| || ||||||    
T  17071228 gatccgttgacatcaggtgtcaacgaattcgttgacaccaaatctcaaccgtttatttt 17071286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 34600265 - 34600323
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctatttt 246  Q
    |||||||| ||| |||||||||||| ||||||||| ||||||||||||| || ||||||    
T  34600265 gatccgttgacatcaggtgtcaacgaattcgttgacaccaaatctcaaccgtttatttt 34600323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 19360530 - 19360481
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaat 230  Q
    |||||| |||||||| |||||||||||||||| ||||||||| |||||||    
T  19360530 gagtcaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaat 19360481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 243
Target Start/End: Complemental strand, 20854954 - 20854897
Alignment:
Q  186 atgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctat 243  Q
    |||||||||| ||||||||||| || ||||||||||| ||||||||| ||| ||||||    
T  20854954 atgatccgttgacaccaggtgttaatggattcgttgacaccaaatctgaaccgtctat 20854897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 1281840 - 1281884
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatct 232  Q
    ||||| || |||||||||||||||||||||||||| |||||||||    
T  1281840 gatccattgacaccaggtgtcaacggattcgttgacaccaaatct 1281884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 1283543 - 1283503
Alignment:
Q  192 cgttaacaccaggtgtcaacggattcgttgataccaaatct 232  Q
    |||| |||||||||||||||||||||||||| |||||||||    
T  1283543 cgttgacaccaggtgtcaacggattcgttgacaccaaatct 1283503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 1554130 - 1554086
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatct 232  Q
    |||||||| |||||||||||||||| ||||||||| |||||||||    
T  1554130 gatccgttgacaccaggtgtcaacgaattcgttgacaccaaatct 1554086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 1283572 - 1283533
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgatacca 227  Q
    |||||||| |||||||||||||||||||||||||| ||||    
T  1283572 gatccgttgacaccaggtgtcaacggattcgttgacacca 1283533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 227
Target Start/End: Original strand, 10554526 - 10554565
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgatacca 227  Q
    |||||||| |||||||||||||||||||||||||| ||||    
T  10554526 gatccgttgacaccaggtgtcaacggattcgttgacacca 10554565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 231
Target Start/End: Original strand, 25858214 - 25858257
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatc 231  Q
    |||||||| |||| ||||||||||||||||||||| ||||||||    
T  25858214 gatccgttgacactaggtgtcaacggattcgttgacaccaaatc 25858257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 136
Target Start/End: Original strand, 38051096 - 38051233
Alignment:
Q  4 ttcaaatattgttgtcagaagaa---tttaggtaatcatctcactatactagtttttgaggtacgttttgcttaattttct-ctattacattcatctaa- 98  Q
    |||||||||||||||||||||||   |||||||||   | |||||||||||| | || ||||| |||| ||||||||||||   || ||||||||||||     
T  38051096 ttcaaatattgttgtcagaagaattgtttaggtaactctttcactatactag-tcttcaggtatgtttggcttaattttctgaaatcacattcatctaaa 38051194  T
Q  99 --atttgtttctattgaacaaaataacaaaaatcaattga 136  Q
      |||||||||||| || ||||||||  ||||||||||||    
T  38051195 atatttgtttctatagagcaaaataa-taaaatcaattga 38051233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 246
Target Start/End: Complemental strand, 17071841 - 17071783
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctatttt 246  Q
    |||||||| ||||||||||| |||| ||||||||| |||||||| |||| || ||||||    
T  17071841 gatccgttgacaccaggtgttaacgaattcgttgacaccaaatcgcaaccgtttatttt 17071783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 239
Target Start/End: Complemental strand, 22799806 - 22799756
Alignment:
Q  189 atccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgt 239  Q
    ||||||| |||||||||||||| | ||||||||| ||||||||| ||||||    
T  22799806 atccgttgacaccaggtgtcaatgaattcgttgacaccaaatcttaactgt 22799756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 230
Target Start/End: Complemental strand, 27363813 - 27363779
Alignment:
Q  196 aacaccaggtgtcaacggattcgttgataccaaat 230  Q
    ||||||||||||||||||||||||||| |||||||    
T  27363813 aacaccaggtgtcaacggattcgttgacaccaaat 27363779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 234
Target Start/End: Complemental strand, 34709084 - 34709038
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctca 234  Q
    |||| ||| |||||||||||||||||||||||||  |||||||||||    
T  34709084 gatctgttgacaccaggtgtcaacggattcgttggcaccaaatctca 34709038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 36038699 - 36038745
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctca 234  Q
    |||||||| ||||||||| |||||||||||||| | |||||||||||    
T  36038699 gatccgttgacaccaggtatcaacggattcgttaacaccaaatctca 36038745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 246
Target Start/End: Complemental strand, 34600889 - 34600820
Alignment:
Q  177 gagagagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctatttt 246  Q
    |||||||| | ||||| || ||||||||||| |||| ||||||||| |||||||| |||| || ||||||    
T  34600889 gagagagttaggatcccttgacaccaggtgttaacgaattcgttgacaccaaatcgcaaccgtttatttt 34600820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 22798905 - 22798949
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatct 232  Q
    |||||||| | | |||||||||||||||||||||| |||||||||    
T  22798905 gatccgttgatatcaggtgtcaacggattcgttgacaccaaatct 22798949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 33005517 - 33005569
Alignment:
Q  180 agagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatct 232  Q
    |||||||||||||||| |||||| ||||||| | ||||||||| || ||||||    
T  33005517 agagtcatgatccgttgacaccaagtgtcaatgaattcgttgacacaaaatct 33005569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 38056798 - 38056846
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||| ||| |||||||||||||||||||| ||||| ||||||| |||||    
T  38056798 gatctgttgacaccaggtgtcaacggattggttgacaccaaatttcaac 38056846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 6e-34; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 180 - 289
Target Start/End: Complemental strand, 11434512 - 11434403
Alignment:
Q  180 agagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctattttttaaaatcaaaagcttataattgtttactaaat 279  Q
    |||||||  ||||||||||||||  |||||||||||||||||| |||||||||||||  ||||||||||||||||||| |||||||||||||||| ||||    
T  11434512 agagtcagtatccgttaacaccaaatgtcaacggattcgttgacaccaaatctcaaccttctattttttaaaatcaaaggcttataattgtttacgaaat 11434413  T
Q  280 caactcacat 289  Q
    ||||||||||    
T  11434412 caactcacat 11434403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 212 - 289
Target Start/End: Complemental strand, 4940273 - 4940196
Alignment:
Q  212 ggattcgttgataccaaatctcaactgtctattttttaaaatcaaaagcttataattgtttactaaatcaactcacat 289  Q
    |||| |||||| |||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4940273 ggatccgttgacaccatatctcaaccgtctattttttaaaatcaaaggcttataattgtttactaaatcaactcacat 4940196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 26529568 - 26529503
Alignment:
Q  180 agagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctattt 245  Q
    ||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  26529568 agagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgtctattt 26529503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 10171273 - 10171337
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctattt 245  Q
    |||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  10171273 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgtctattt 10171337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 12344898 - 12344956
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctatttt 246  Q
    ||||| || ||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  12344898 gatccattgacaccaggtgtcaacagattcgttgataccaaatctcaaccgtctatttt 12344956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 188 - 248
Target Start/End: Complemental strand, 10172013 - 10171953
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctatttttt 248  Q
    |||||||| |||||||||||||||| ||||||||| ||||||||||||| |||| ||||||    
T  10172013 gatccgttgacaccaggtgtcaacgcattcgttgacaccaaatctcaaccgtctctttttt 10171953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 188 - 248
Target Start/End: Original strand, 26528827 - 26528887
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctatttttt 248  Q
    |||||||| |||||||||||||||| ||||||||| ||||||||||||| |||| ||||||    
T  26528827 gatccgttgacaccaggtgtcaacgcattcgttgacaccaaatctcaaccgtctctttttt 26528887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 19310998 - 19311056
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgt 239  Q
    |||||| |||||||| ||||||||||| |||||||| ||||| ||||||||||||||||    
T  19310998 gagtcaggatccgttgacaccaggtgttaacggatttgttgacaccaaatctcaactgt 19311056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 8488473 - 8488521
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    ||||| || |||||||||||||||||||||||||| |||||||||||||    
T  8488473 gatccattgacaccaggtgtcaacggattcgttgacaccaaatctcaac 8488521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 19323814 - 19323766
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||||| |||||||||||||||| ||||||||| |||||||||||||    
T  19323814 gatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctcaac 19323766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 234
Target Start/End: Original strand, 19322990 - 19323033
Alignment:
Q  191 ccgttaacaccaggtgtcaacggattcgttgataccaaatctca 234  Q
    ||||| |||||||||||||||||||||||||| |||||||||||    
T  19322990 ccgttgacaccaggtgtcaacggattcgttgacaccaaatctca 19323033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 19311880 - 19311830
Alignment:
Q  182 agtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatct 232  Q
    ||||| ||| |||| |||||||||||||||||||||||||| |||||||||    
T  19311880 agtcaggattcgttgacaccaggtgtcaacggattcgttgacaccaaatct 19311830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 33436327 - 33436277
Alignment:
Q  182 agtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatct 232  Q
    ||||| |||||||| ||||||| |||||||||||||||||| |||||||||    
T  33436327 agtcaggatccgttgacaccagatgtcaacggattcgttgacaccaaatct 33436277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 9441230 - 9441287
Alignment:
Q  177 gagagagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctca 234  Q
    ||||||| || ||| |||| ||||||||||||||||||| |||||| |||||||||||    
T  9441230 gagagagacaggattcgttgacaccaggtgtcaacggatccgttgacaccaaatctca 9441287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 18227729 - 18227783
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||| |||||||| ||||||| |||||||||||||||||| |||||||| ||||    
T  18227729 gagtcaggatccgttgacaccag-tgtcaacggattcgttgacaccaaatcacaac 18227783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 33435344 - 33435395
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgt 239  Q
    |||||||| ||||| ||||| |||||||||||||| ||||||||| ||||||    
T  33435344 gatccgttgacacctggtgttaacggattcgttgacaccaaatcttaactgt 33435395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 3623179 - 3623237
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctatttt 246  Q
    |||||||| ||| |||||||||||| |||| |||| ||||||||||||| || ||||||    
T  3623179 gatccgttgacatcaggtgtcaacgaattctttgacaccaaatctcaaccgtttatttt 3623237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 231
Target Start/End: Complemental strand, 8489334 - 8489284
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatc 231  Q
    |||||| |||||||| |||||||||||||||| ||||||| | ||||||||    
T  8489334 gagtcaggatccgttgacaccaggtgtcaacgaattcgttaacaccaaatc 8489284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 5861894 - 5861938
Alignment:
Q  192 cgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||| |||||||||| |||| |||||||||| |||||||||||||    
T  5861894 cgttgacaccaggtgccaacagattcgttgacaccaaatctcaac 5861938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 46)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 188 - 286
Target Start/End: Complemental strand, 3772574 - 3772476
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctattttttaaaatcaaaagcttataattgtttactaaatcaactca 286  Q
    |||||||| |||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||| ||| |||||||||||| |||||||||||    
T  3772574 gatccgttgacaccaggtgtcaacgtattcgttgacaccaaatctcaaccgtctattttttaaaatcaaaggctaataattgtttacgaaatcaactca 3772476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 188 - 289
Target Start/End: Complemental strand, 45931265 - 45931164
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctattttttaaaatcaaaagcttataattgtttactaaatcaactcac 287  Q
    |||||||||||||||  ||||||||||| |||||| ||||||||||||  ||| ||||||  ||||||||||||||||||| ||||||||||||||||||    
T  45931265 gatccgttaacaccatatgtcaacggatccgttgacaccaaatctcaatcgtccatttttataaatcaaaagcttataattatttactaaatcaactcac 45931166  T
Q  288 at 289  Q
    ||    
T  45931165 at 45931164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 236
Target Start/End: Original strand, 26636096 - 26636155
Alignment:
Q  177 gagagagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||    
T  26636096 gagagagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaac 26636155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 30661503 - 30661419
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctattttttaaaatcaaaagcttataattgttt 272  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||| ||  ||||| |  ||||||| ||||||||| ||||    
T  30661503 gatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgttgattttatttaatcaaaggcttataatagttt 30661419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 37949609 - 37949693
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctattttttaaaatcaaaagcttataattgttt 272  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||| ||  ||||| |  ||||||| ||||||||| ||||    
T  37949609 gatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgttgattttatttaatcaaaggcttataatagttt 37949693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 46428184 - 46428239
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||| |||||||| |||||||||||||||||||||||||| |||||||||||||    
T  46428184 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaac 46428239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 236
Target Start/End: Original strand, 7668480 - 7668534
Alignment:
Q  182 agtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    ||||| |||||||| |||||||||||||||||||||||||| |||||||||||||    
T  7668480 agtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaac 7668534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 25599019 - 25599073
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaa 235  Q
    |||||| |||||||| |||||||||||||||||||||||||| ||||||||||||    
T  25599019 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaa 25599073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 25342501 - 25342549
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||    
T  25342501 gatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaac 25342549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 25343307 - 25343355
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||    
T  25343307 gatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaac 25343355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 259
Target Start/End: Complemental strand, 25343295 - 25343216
Alignment:
Q  180 agagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctattttttaaaatcaaaag 259  Q
    ||||||| |||||||| |||||||||||||| | ||||||||| |||||||||||||  || |||||||  |||||||||    
T  25343295 agagtcaggatccgttgacaccaggtgtcaatgaattcgttgacaccaaatctcaaccatcaattttttttaatcaaaag 25343216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 26636914 - 26636860
Alignment:
Q  182 agtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    ||||| |||||||| |||| ||||||||||||||||||||| |||||||||||||    
T  26636914 agtcaggatccgttgacacaaggtgtcaacggattcgttgacaccaaatctcaac 26636860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 30660597 - 30660643
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctca 234  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||    
T  30660597 gatccgttgacaccaggtgtcaacggattcgttgacaccaaatctca 30660643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 234
Target Start/End: Complemental strand, 37950515 - 37950469
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctca 234  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||    
T  37950515 gatccgttgacaccaggtgtcaacggattcgttgacaccaaatctca 37950469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 45099948 - 45099899
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaat 230  Q
    |||||| |||||||| |||||||||||||||||||||||||| |||||||    
T  45099948 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaat 45099899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 13785641 - 13785597
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatct 232  Q
    |||||||| |||||||||||||||||||||||||| |||||||||    
T  13785641 gatccgttgacaccaggtgtcaacggattcgttgacaccaaatct 13785597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 182 - 286
Target Start/End: Complemental strand, 18977823 - 18977720
Alignment:
Q  182 agtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctattttttaaaatcaaaagcttataattgtttactaaatca 281  Q
    ||||| ||||| || |||||||||||||||||||||||| | |||||||||||||  || |||||||  |||| |||| || |||||||||  ||||| |    
T  18977823 agtcaggatccattgacaccaggtgtcaacggattcgttaacaccaaatctcaaccatcaatttttt-taatccaaaggttgtaattgtttcttaaatta 18977725  T
Q  282 actca 286  Q
    |||||    
T  18977724 actca 18977720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 19067641 - 19067689
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||||| |||||| ||||||||||||||||||| |||||||||||||    
T  19067641 gatccgttgacaccacgtgtcaacggattcgttgacaccaaatctcaac 19067689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 24389664 - 24389616
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||||| ||||||||||||||||||||| |||| |||||||||||||    
T  24389664 gatccgttgacaccaggtgtcaacggattcattgacaccaaatctcaac 24389616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 27948450 - 27948498
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||||| |||||||||||||||| ||||||||| |||||||||||||    
T  27948450 gatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctcaac 27948498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 43065164 - 43065120
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatct 232  Q
    |||||||| |||||||||||||||||||||||||| |||||||||    
T  43065164 gatccgttgacaccaggtgtcaacggattcgttgacaccaaatct 43065120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 45161973 - 45162024
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgt 239  Q
    ||||| || ||||||||||| |||||||||||||| ||||||||||||||||    
T  45161973 gatccattgacaccaggtgttaacggattcgttgacaccaaatctcaactgt 45162024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 3027984 - 3028026
Alignment:
Q  194 ttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    ||||||||||||||||||| ||||||||| |||||||||||||    
T  3027984 ttaacaccaggtgtcaacgaattcgttgacaccaaatctcaac 3028026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 46428873 - 46428819
Alignment:
Q  180 agagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctca 234  Q
    ||||||| |||||||| |||||||||||||||| ||||||||| | |||||||||    
T  46428873 agagtcaggatccgttgacaccaggtgtcaacgaattcgttgacatcaaatctca 46428819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 3903393 - 3903340
Alignment:
Q  182 agtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaa 235  Q
    ||||| |||||||| ||||||||||||||||||| |||||| ||||||| ||||    
T  3903393 agtcaggatccgttgacaccaggtgtcaacggatccgttgacaccaaatatcaa 3903340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 236
Target Start/End: Original strand, 40273555 - 40273612
Alignment:
Q  179 gagagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||| | |||||||| |||||||||||||| | ||||||||| |||||||||||||    
T  40273555 gagagttaggatccgttgacaccaggtgtcaatgaattcgttgacaccaaatctcaac 40273612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 1417612 - 1417656
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatct 232  Q
    |||||||| |||||||||||||||| ||||||||| |||||||||    
T  1417612 gatccgttgacaccaggtgtcaacgaattcgttgacaccaaatct 1417656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 3029246 - 3029198
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||||| |||||||||||||||| ||||||||| |||||||| ||||    
T  3029246 gatccgttgacaccaggtgtcaacgaattcgttgacaccaaatcccaac 3029198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 16664173 - 16664125
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||||| ||||||||||||||||||| |||||| || ||||||||||    
T  16664173 gatccgttgacaccaggtgtcaacggatccgttgacactaaatctcaac 16664125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 17638533 - 17638485
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||||| ||||||||||||||||||| |||||| || ||||||||||    
T  17638533 gatccgttgacaccaggtgtcaacggatccgttgacactaaatctcaac 17638485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 19068443 - 19068395
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||||| |||||||||||||||| ||||||||| ||||||| |||||    
T  19068443 gatccgttgacaccaggtgtcaacgtattcgttgacaccaaatttcaac 19068395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 21497031 - 21496983
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||||| ||| |||||||||||| ||||||||| |||||||||||||    
T  21497031 gatccgttgacaacaggtgtcaacgaattcgttgacaccaaatctcaac 21496983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 38226023 - 38225979
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatct 232  Q
    |||||||| |||||||||||||||| ||||||||| |||||||||    
T  38226023 gatccgttgacaccaggtgtcaacgaattcgttgacaccaaatct 38225979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 47719752 - 47719708
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatct 232  Q
    ||||| || |||||||||||||||||||||||||| |||||||||    
T  47719752 gatccattgacaccaggtgtcaacggattcgttgacaccaaatct 47719708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 235
Target Start/End: Original strand, 24719339 - 24719386
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaa 235  Q
    |||||||| ||||||| |||||||||||||||||| ||||||| ||||    
T  24719339 gatccgttgacaccagatgtcaacggattcgttgacaccaaatatcaa 24719386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 231
Target Start/End: Complemental strand, 31278202 - 31278159
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatc 231  Q
    |||||||| ||||||| |||||||||||||||||| ||||||||    
T  31278202 gatccgttgacaccagatgtcaacggattcgttgacaccaaatc 31278159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 246
Target Start/End: Complemental strand, 3219594 - 3219536
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctatttt 246  Q
    ||||||||||||| |||||| |||| ||||||||| || |||||||||| || ||||||    
T  3219594 gatccgttaacactaggtgttaacgaattcgttgacacaaaatctcaaccgtttatttt 3219536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 14686135 - 14686181
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctca 234  Q
    |||||||| |||||| ||||||||||||| ||||| |||||||||||    
T  14686135 gatccgttgacaccaagtgtcaacggatttgttgacaccaaatctca 14686181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 37395547 - 37395505
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaat 230  Q
    |||||||| |||||||||||||||||||||||| | |||||||    
T  37395547 gatccgttgacaccaggtgtcaacggattcgttaacaccaaat 37395505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 231
Target Start/End: Original strand, 38225297 - 38225347
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatc 231  Q
    ||||||||||||||| |||||||||||||||| || |||| | ||||||||    
T  38225297 gagtcatgatccgttgacaccaggtgtcaacgaatccgttaacaccaaatc 38225347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 234
Target Start/End: Complemental strand, 25599874 - 25599821
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctca 234  Q
    |||||| |||||||| ||||||||||||||  ||||| |||| |||||||||||    
T  25599874 gagtcaggatccgttgacaccaggtgtcaatagattcattgacaccaaatctca 25599821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 3688388 - 3688432
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatct 232  Q
    |||||||| ||||||| | |||||||||||||||| |||||||||    
T  3688388 gatccgttgacaccagatatcaacggattcgttgacaccaaatct 3688432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 14305094 - 14305138
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatct 232  Q
    |||||||| |||| |||||||||||||||| |||| |||||||||    
T  14305094 gatccgttgacactaggtgtcaacggattcattgacaccaaatct 14305138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 24453770 - 24453730
Alignment:
Q  192 cgttaacaccaggtgtcaacggattcgttgataccaaatct 232  Q
    |||| |||||||||||||||||||| ||||| |||||||||    
T  24453770 cgttgacaccaggtgtcaacggatttgttgacaccaaatct 24453730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 31277433 - 31277469
Alignment:
Q  194 ttaacaccaggtgtcaacggattcgttgataccaaat 230  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  31277433 ttaacaccaggtgtcaacgaattcgttgacaccaaat 31277469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 37706424 - 37706480
Alignment:
Q  180 agagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    ||||||| ||||| || ||||||||| |||||||||||||| | ||||||| |||||    
T  37706424 agagtcaggatccattgacaccaggtatcaacggattcgttaacaccaaatttcaac 37706480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 188 - 289
Target Start/End: Complemental strand, 8339 - 8238
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctattttttaaaatcaaaagcttataattgtttactaaatcaactcac 287  Q
    ||||| || |||||||||||||||| ||||||| | ||||||||||||| |||||||||||||||||||| ||| |||||||||||  ||||||||||||    
T  8339 gatccattgacaccaggtgtcaacgtattcgttaacaccaaatctcaaccgtctattttttaaaatcaaaggctaataattgtttatgaaatcaactcac 8240  T
Q  288 at 289  Q
    ||    
T  8239 at 8238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 54)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 181 - 289
Target Start/End: Complemental strand, 53148666 - 53148559
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctattttttaaaatcaaaagcttataattgtttactaaatc 280  Q
    |||||| ||||| || ||| ||||||||||| |||||||||| ||||||||||||| ||||||||||| |||||||| ||||||||||| |||||||||     
T  53148666 gagtcaggatccattgacatcaggtgtcaacagattcgttgacaccaaatctcaaccgtctatttttt-aaatcaaaggcttataattgcttactaaatt 53148568  T
Q  281 aactcacat 289  Q
    |||||||||    
T  53148567 aactcacat 53148559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 177 - 236
Target Start/End: Complemental strand, 47785858 - 47785799
Alignment:
Q  177 gagagagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||||||| |||| ||| |||||||||||||||||||||||||| |||||||||||||    
T  47785858 gagagagtcaggatctgttgacaccaggtgtcaacggattcgttgacaccaaatctcaac 47785799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 246
Target Start/End: Complemental strand, 47688527 - 47688469
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctatttt 246  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||| || ||||||    
T  47688527 gatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgtttatttt 47688469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 53732440 - 53732498
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctatttt 246  Q
    |||||||| |||||||||||||||||||||||||| || |||||||||| |||||||||    
T  53732440 gatccgttgacaccaggtgtcaacggattcgttgacactaaatctcaaccgtctatttt 53732498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 181 - 246
Target Start/End: Complemental strand, 8248575 - 8248510
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctatttt 246  Q
    |||||| |||||||| ||||||| |||||||||||||||||| ||||||||| ||| |||||||||    
T  8248575 gagtcaggatccgttgacaccagatgtcaacggattcgttgacaccaaatcttaaccgtctatttt 8248510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 181 - 246
Target Start/End: Complemental strand, 8266240 - 8266175
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctatttt 246  Q
    |||||| |||||||| ||||||| |||||||||||||||||| ||||||||| ||| |||||||||    
T  8266240 gagtcaggatccgttgacaccagatgtcaacggattcgttgacaccaaatcttaaccgtctatttt 8266175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 180 - 257
Target Start/End: Complemental strand, 30573765 - 30573688
Alignment:
Q  180 agagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctattttttaaaatcaaa 257  Q
    ||||||| ||||| || |||||||||||||||||||||||||| ||||||||||||| ||| ||| |||  |||||||    
T  30573765 agagtcaggatccattgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgtcgattgtttttaatcaaa 30573688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 9365166 - 9365222
Alignment:
Q  180 agagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    ||||||| ||||||||||||||||||||||||| ||| ||||| |||||||||||||    
T  9365166 agagtcaggatccgttaacaccaggtgtcaacgaatttgttgacaccaaatctcaac 9365222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 20774235 - 20774180
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||| ||||| || |||||||||||||||||||||||||| |||||||||||||    
T  20774235 gagtcaggatccattgacaccaggtgtcaacggattcgttgacaccaaatctcaac 20774180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 246
Target Start/End: Original strand, 8247693 - 8247759
Alignment:
Q  180 agagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctatttt 246  Q
    ||||||| |||||||| ||||| |||||||||||||||||||| || |||||| ||| |||||||||    
T  8247693 agagtcaggatccgttgacacctggtgtcaacggattcgttgacacaaaatcttaaccgtctatttt 8247759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 2444366 - 2444419
Alignment:
Q  177 gagagagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaat 230  Q
    |||||||| | |||||||| |||||||||||||||||||||||||| |||||||    
T  2444366 gagagagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaat 2444419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 272
Target Start/End: Original strand, 7841811 - 7841880
Alignment:
Q  203 ggtgtcaacggattcgttgataccaaatctcaactgtctattttttaaaatcaaaagcttataattgttt 272  Q
    |||||||||| ||||||||| |||||||||||||| |||||||| | ||||| ||||  |||||||||||    
T  7841811 ggtgtcaacgaattcgttgacaccaaatctcaactatctattttattaaatccaaagactataattgttt 7841880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 16903687 - 16903643
Alignment:
Q  192 cgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||| |||||||||||||||||||||||||| |||||||||||||    
T  16903687 cgttgacaccaggtgtcaacggattcgttgacaccaaatctcaac 16903643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 24374786 - 24374842
Alignment:
Q  180 agagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    ||||||| |||||||| ||||||| |||||||| ||||||||| |||||||||||||    
T  24374786 agagtcaggatccgttgacaccagctgtcaacgaattcgttgacaccaaatctcaac 24374842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 26147080 - 26147032
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||||| |||||||||||||||| ||||||||| |||||||||||||    
T  26147080 gatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctcaac 26147032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 188 - 248
Target Start/End: Complemental strand, 32089661 - 32089601
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctatttttt 248  Q
    |||||||| ||||||| |||||||| |||||||||||||||||| || | |||||||||||    
T  32089661 gatccgttgacaccagatgtcaacgaattcgttgataccaaatcacatccgtctatttttt 32089601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 188 - 248
Target Start/End: Original strand, 56262483 - 56262543
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctatttttt 248  Q
    |||||||| |||||||||||||| | ||||||||| ||||||||||||| |||||| ||||    
T  56262483 gatccgttgacaccaggtgtcaatgaattcgttgacaccaaatctcaaccgtctatatttt 56262543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 235
Target Start/End: Complemental strand, 599349 - 599302
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaa 235  Q
    |||||||| ||||| |||||||||||||||||||| ||||||||||||    
T  599349 gatccgttgacacctggtgtcaacggattcgttgacaccaaatctcaa 599302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 236
Target Start/End: Complemental strand, 40348194 - 40348143
Alignment:
Q  185 catgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    ||||||||||| |||||||||||||| | ||||||| |||||||||||||||    
T  40348194 catgatccgttgacaccaggtgtcaatgaattcgttaataccaaatctcaac 40348143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 231
Target Start/End: Original strand, 52871303 - 52871346
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatc 231  Q
    |||||||| |||||||||||||||||||||||||| ||||||||    
T  52871303 gatccgttgacaccaggtgtcaacggattcgttgacaccaaatc 52871346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 232
Target Start/End: Original strand, 55976172 - 55976215
Alignment:
Q  189 atccgttaacaccaggtgtcaacggattcgttgataccaaatct 232  Q
    ||||||| |||||||||||||||||||||||||| |||||||||    
T  55976172 atccgttgacaccaggtgtcaacggattcgttgacaccaaatct 55976215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 8265366 - 8265424
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctatttt 246  Q
    |||||||| ||||| |||||||||||||||||||| || |||||| ||| |||||||||    
T  8265366 gatccgttgacacctggtgtcaacggattcgttgacacaaaatcttaaccgtctatttt 8265424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 9365862 - 9365804
Alignment:
Q  190 tccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctatttttt 248  Q
    |||||| ||||||||||||||||||||| |||| |||||||| |||| ||| |||||||    
T  9365862 tccgttgacaccaggtgtcaacggattcattgacaccaaatcacaaccgtcaatttttt 9365804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 231
Target Start/End: Complemental strand, 31329772 - 31329722
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatc 231  Q
    |||||| |||||||| |||||||||||||||||||||||| | ||||||||    
T  31329772 gagtcaggatccgttgacaccaggtgtcaacggattcgttaacaccaaatc 31329722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 243
Target Start/End: Original strand, 53733125 - 53733179
Alignment:
Q  189 atccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctat 243  Q
    ||||||| ||||||| ||| |||| ||||||||||||||||||||||| ||||||    
T  53733125 atccgttgacaccagctgttaacgaattcgttgataccaaatctcaaccgtctat 53733179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 230
Target Start/End: Original strand, 53772812 - 53772854
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaat 230  Q
    |||||||| |||||||||||||||||||||||||| |||||||    
T  53772812 gatccgttgacaccaggtgtcaacggattcgttgacaccaaat 53772854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 246
Target Start/End: Complemental strand, 55001488 - 55001430
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctatttt 246  Q
    |||||||| |||||||||||||||||||||||||| || |||||| ||| || ||||||    
T  55001488 gatccgttgacaccaggtgtcaacggattcgttgacactaaatcttaaccgtttatttt 55001430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 5046002 - 5046047
Alignment:
Q  201 caggtgtcaacggattcgttgataccaaatctcaactgtctatttt 246  Q
    |||||||||||||||||||||| ||||||||||||| || ||||||    
T  5046002 caggtgtcaacggattcgttgacaccaaatctcaaccgtttatttt 5046047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 7841542 - 7841595
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctca 234  Q
    |||||| |||||||| ||| ||||||| |||||||||||||| |||||||||||    
T  7841542 gagtcaggatccgttgacatcaggtgttaacggattcgttgacaccaaatctca 7841595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 44469491 - 44469540
Alignment:
Q  182 agtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatc 231  Q
    |||||||||||| | |||||||||||||||| ||||||||| ||||||||    
T  44469491 agtcatgatccgatgacaccaggtgtcaacgaattcgttgacaccaaatc 44469540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 11938716 - 11938764
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||| ||| |||||||||||||||| ||||||||| |||||||||||||    
T  11938716 gatctgttcacaccaggtgtcaacgaattcgttgacaccaaatctcaac 11938764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 19080390 - 19080438
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||| ||| |||||||||||||||||||||||||| ||||||| |||||    
T  19080390 gatctgttgacaccaggtgtcaacggattcgttgacaccaaatttcaac 19080438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 245
Target Start/End: Complemental strand, 53733770 - 53733722
Alignment:
Q  197 acaccaggtgtcaacggattcgttgataccaaatctcaactgtctattt 245  Q
    |||||||||||||||||||||||||| ||||||| |||||  |||||||    
T  53733770 acaccaggtgtcaacggattcgttgacaccaaatttcaaccatctattt 53733722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 53773634 - 53773590
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatct 232  Q
    |||||||| ||| |||||||||||||||||||||| |||||||||    
T  53773634 gatccgttgacatcaggtgtcaacggattcgttgacaccaaatct 53773590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 231
Target Start/End: Complemental strand, 3654563 - 3654520
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatc 231  Q
    |||||||| || ||||||||||||||||||||||| ||||||||    
T  3654563 gatccgttgacgccaggtgtcaacggattcgttgacaccaaatc 3654520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 232
Target Start/End: Complemental strand, 24158875 - 24158824
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatct 232  Q
    |||||| ||||| || ||||||||||||||| |||||||||| |||||||||    
T  24158875 gagtcaggatccattgacaccaggtgtcaacagattcgttgacaccaaatct 24158824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 231
Target Start/End: Complemental strand, 42882729 - 42882686
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatc 231  Q
    |||||||| ||||||| |||||||||||||||||| ||||||||    
T  42882729 gatccgttgacaccagatgtcaacggattcgttgacaccaaatc 42882686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 232
Target Start/End: Complemental strand, 55976994 - 55976959
Alignment:
Q  197 acaccaggtgtcaacggattcgttgataccaaatct 232  Q
    |||||||||||||||||||||||||| |||||||||    
T  55976994 acaccaggtgtcaacggattcgttgacaccaaatct 55976959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 234
Target Start/End: Complemental strand, 2446209 - 2446163
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctca 234  Q
    |||||||| ||||||||||||||| |||||||| | |||||||||||    
T  2446209 gatccgttgacaccaggtgtcaacagattcgttaacaccaaatctca 2446163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 16903723 - 16903677
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgatacca 227  Q
    |||||| ||| |||| |||||||||||||||||||||||||| ||||    
T  16903723 gagtcaggattcgttgacaccaggtgtcaacggattcgttgacacca 16903677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 230
Target Start/End: Original strand, 19550291 - 19550333
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaat 230  Q
    ||||| || |||||||||||||||||||||||||| |||||||    
T  19550291 gatcccttgacaccaggtgtcaacggattcgttgacaccaaat 19550333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 234
Target Start/End: Complemental strand, 43146692 - 43146650
Alignment:
Q  192 cgttaacaccaggtgtcaacggattcgttgataccaaatctca 234  Q
    |||| ||||||||||||||||||||| |||| |||||||||||    
T  43146692 cgttgacaccaggtgtcaacggattccttgacaccaaatctca 43146650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 47687914 - 47687972
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctatttt 246  Q
    |||||||| ||||||||||| |||| ||||||||| |||||||| |||| || ||||||    
T  47687914 gatccgttgacaccaggtgttaacgaattcgttgacaccaaatcgcaaccgtttatttt 47687972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 287
Target Start/End: Complemental strand, 56263111 - 56263022
Alignment:
Q  197 acaccaggtgtcaacggattcgttgataccaaatctcaactgtctattttttaaaatcaaaagcttataattgtttactaaatcaactcac 287  Q
    |||||||||||||||| || |||| | ||||||||||||| |||||| ||||  |||| |||| | ||||||||||  |||||| ||||||    
T  56263111 acaccaggtgtcaacgaatccgtttacaccaaatctcaaccgtctatatttt-taatccaaagttcataattgtttgttaaatctactcac 56263022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 7842577 - 7842520
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctattt 245  Q
    ||||| || ||| |||||||||||| ||||||||| |||||||||||||  |||||||    
T  7842577 gatccattgacatcaggtgtcaacgaattcgttgacaccaaatctcaaccatctattt 7842520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 40495093 - 40495146
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctca 234  Q
    |||||| |||||||| |||||||||||||||  ||||||||| |||||| ||||    
T  40495093 gagtcaggatccgttgacaccaggtgtcaacaaattcgttgacaccaaacctca 40495146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 1465317 - 1465373
Alignment:
Q  180 agagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    ||||||| |||||||| ||||||||||||||| ||||| |||| | |||||| ||||    
T  1465317 agagtcaggatccgttgacaccaggtgtcaacagattcattgacatcaaatcacaac 1465373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 1866348 - 1866396
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||||| |||| ||||||||| | ||||||||| |||||||||||||    
T  1866348 gatccgttgacactaggtgtcaatgaattcgttgacaccaaatctcaac 1866396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 11939489 - 11939441
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||||| |||||  ||||||||||||||||||| || ||||||||||    
T  11939489 gatccgttgacacctagtgtcaacggattcgttgacacgaaatctcaac 11939441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 24551971 - 24551927
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatct 232  Q
    ||||| || |||||||||||||||||||| ||||| |||||||||    
T  24551971 gatccattgacaccaggtgtcaacggatttgttgacaccaaatct 24551927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 26159669 - 26159621
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||||| ||| || ||||||||||||||||||| |||||||| ||||    
T  26159669 gatccgttgacatcaagtgtcaacggattcgttgacaccaaatcgcaac 26159621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 32088835 - 32088867
Alignment:
Q  199 accaggtgtcaacggattcgttgataccaaatc 231  Q
    |||||||||||||||||||||||| ||||||||    
T  32088835 accaggtgtcaacggattcgttgacaccaaatc 32088867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 53147876 - 53147924
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    ||||| || ||||||| |||||||||||||||||| |||||||| ||||    
T  53147876 gatccattgacaccagatgtcaacggattcgttgacaccaaatcccaac 53147924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 55000692 - 55000736
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatct 232  Q
    ||||| || ||||||| |||||||||||||||||| |||||||||    
T  55000692 gatccattgacaccagatgtcaacggattcgttgacaccaaatct 55000736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 203 - 287
Target Start/End: Original strand, 44699881 - 44699965
Alignment:
Q  203 ggtgtcaacggattcgttgataccaaatctcaactgtctattttttaaaatcaaaagcttataattgtttactaaatcaactcac 287  Q
    |||||||||||||||||||| ||||||||||||| |||||||||| ||||||||  |||||||||| ||||||||||||||||||    
T  44699881 ggtgtcaacggattcgttgacaccaaatctcaaccgtctatttttaaaaatcaatggcttataattatttactaaatcaactcac 44699965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 248
Target Start/End: Complemental strand, 52266508 - 52266441
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctatttttt 248  Q
    |||||| |||||||||||||||||||| |||| ||||||||| ||||||||||||| |||||||||||    
T  52266508 gagtcaggatccgttaacaccaggtgttaacgaattcgttgacaccaaatctcaaccgtctatttttt 52266441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 265152 - 265099
Alignment:
Q  182 agtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaa 235  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  265152 agtcatgatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaa 265099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 46150785 - 46150729
Alignment:
Q  180 agagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    ||||||| |||||||| |||| ||||||||||||||||||||| |||||||||||||    
T  46150785 agagtcaggatccgttgacactaggtgtcaacggattcgttgacaccaaatctcaac 46150729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 31974656 - 31974715
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctattttt 247  Q
    |||||||| |||||| ||||||||||||||||||| |||||||||||||  |||||||||    
T  31974656 gatccgttgacaccaagtgtcaacggattcgttgacaccaaatctcaaccatctattttt 31974715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 272
Target Start/End: Original strand, 48413333 - 48413407
Alignment:
Q  197 acaccaggtgtcaacggattcgttgataccaaatctcaactgtctattttttaaaatcaaaagcttataattgttt 272  Q
    |||||||||||||||||||||||||| |||||||| |||| ||| |||||||  ||||||| ||| ||||||||||    
T  48413333 acaccaggtgtcaacggattcgttgacaccaaatcacaaccgtcaatttttt-caatcaaaggctaataattgttt 48413407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 248
Target Start/End: Complemental strand, 48507091 - 48507020
Alignment:
Q  177 gagagagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctatttttt 248  Q
    ||||||| || |||||||| |||||||||||||| | ||||||||| ||||||||||||| |||||| ||||    
T  48507091 gagagagacaggatccgttgacaccaggtgtcaatgaattcgttgacaccaaatctcaaccgtctatatttt 48507020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 232
Target Start/End: Original strand, 48648201 - 48648252
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatct 232  Q
    |||||| |||||||| |||||||||||||||||||||||||| |||||||||    
T  48648201 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatct 48648252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 14871150 - 14871204
Alignment:
Q  180 agagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctca 234  Q
    ||||||| |||||||| |||||||||||||||| ||||||||| |||||||||||    
T  14871150 agagtcaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctca 14871204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 17605715 - 17605768
Alignment:
Q  192 cgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctattt 245  Q
    |||| |||||||||||||||||||||||||| ||||||| ||||| ||||||||    
T  17605715 cgttgacaccaggtgtcaacggattcgttgacaccaaatttcaaccgtctattt 17605768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 17603173 - 17603217
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatct 232  Q
    |||||||| |||||||||||||||||||||||||| |||||||||    
T  17603173 gatccgttgacaccaggtgtcaacggattcgttgacaccaaatct 17603217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 21727577 - 21727533
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatct 232  Q
    |||||||| |||||||||||||||||||||||||| |||||||||    
T  21727577 gatccgttgacaccaggtgtcaacggattcgttgacaccaaatct 21727533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 182 - 236
Target Start/End: Original strand, 31114943 - 31114994
Alignment:
Q  182 agtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    ||||| |||||||||||||   |||||||||||||||||||||||||||||||||    
T  31114943 agtcaggatccgttaacac---gtgtcaacggattcgttgataccaaatctcaac 31114994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 41458030 - 41458086
Alignment:
Q  180 agagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    ||||||| ||| |||| | |||||||||||||||||||||||| |||||||||||||    
T  41458030 agagtcaggattcgttgataccaggtgtcaacggattcgttgacaccaaatctcaac 41458086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 236
Target Start/End: Original strand, 981673 - 981720
Alignment:
Q  189 atccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    ||||||| |||||||||||||||| ||||||||| |||||||||||||    
T  981673 atccgttgacaccaggtgtcaacgaattcgttgacaccaaatctcaac 981720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 45081458 - 45081403
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||| |||||||| |||||  ||||||||||||||||||| |||||||||||||    
T  45081458 gagtcaggatccgttgacacctagtgtcaacggattcgttgacaccaaatctcaac 45081403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 55373762 - 55373712
Alignment:
Q  180 agagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaat 230  Q
    ||||||| ||| |||| |||||||||||||||||||||||||| |||||||    
T  55373762 agagtcaggattcgttgacaccaggtgtcaacggattcgttgacaccaaat 55373712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 11652296 - 11652341
Alignment:
Q  186 atgatccgttaacaccaggtgtcaacggattcgttgataccaaatc 231  Q
    ||||||| |||||| |||||||||||||||||||||| ||||||||    
T  11652296 atgatccattaacatcaggtgtcaacggattcgttgacaccaaatc 11652341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 30222157 - 30222104
Alignment:
Q  177 gagagagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaat 230  Q
    |||||||||| ||| |||| ||||||||||||||  ||||||||||||||||||    
T  30222157 gagagagtcaggattcgttgacaccaggtgtcaatagattcgttgataccaaat 30222104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 37520614 - 37520561
Alignment:
Q  183 gtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||| |||||||| | |||||||||||||| ||||||||| |||||||||||||    
T  37520614 gtcaggatccgttgataccaggtgtcaacgaattcgttgacaccaaatctcaac 37520561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 234
Target Start/End: Complemental strand, 37988273 - 37988220
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctca 234  Q
    |||||| ||||| || |||||||||||||||| ||||||||| |||||||||||    
T  37988273 gagtcaggatccattgacaccaggtgtcaacgaattcgttgacaccaaatctca 37988220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 52605538 - 52605489
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaat 230  Q
    |||||| |||||||| |||||||||||||||| ||||| |||||||||||    
T  52605538 gagtcaggatccgttgacaccaggtgtcaacgaattcgatgataccaaat 52605489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 257
Target Start/End: Original strand, 48764475 - 48764551
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctattttttaaaatcaaa 257  Q
    |||||| ||||| || ||| |||||||||||| ||||||||| ||||||||||||| ||| ||| |||  |||||||    
T  48764475 gagtcaggatccattgacatcaggtgtcaacgaattcgttgacaccaaatctcaaccgtcgattgtttttaatcaaa 48764551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 231
Target Start/End: Complemental strand, 10847957 - 10847914
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatc 231  Q
    |||||||||||||||||||||||| ||||| |||| ||||||||    
T  10847957 gatccgttaacaccaggtgtcaacagattcattgacaccaaatc 10847914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 13477817 - 13477778
Alignment:
Q  197 acaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||||||||||||| ||||||||| |||||||||||||    
T  13477817 acaccaggtgtcaacgaattcgttgacaccaaatctcaac 13477778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 232
Target Start/End: Complemental strand, 17604000 - 17603965
Alignment:
Q  197 acaccaggtgtcaacggattcgttgataccaaatct 232  Q
    |||||||||||||||||||||||||| |||||||||    
T  17604000 acaccaggtgtcaacggattcgttgacaccaaatct 17603965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 20213587 - 20213536
Alignment:
Q  180 agagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatc 231  Q
    ||||||| |||||||| |||||||||||| ||| ||||||||| ||||||||    
T  20213587 agagtcaggatccgttgacaccaggtgtcgacgaattcgttgacaccaaatc 20213536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 235
Target Start/End: Complemental strand, 31115647 - 31115600
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaa 235  Q
    |||||||| |||| |||||||||| |||||||||| ||||||||||||    
T  31115647 gatccgttgacactaggtgtcaacagattcgttgacaccaaatctcaa 31115600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 248
Target Start/End: Original strand, 48506440 - 48506502
Alignment:
Q  185 catgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctatttttt 248  Q
    ||||||||||| ||||  |||||||||| ||||||||| ||||||||||||| |||||| ||||    
T  48506440 catgatccgttgacact-ggtgtcaacgaattcgttgacaccaaatctcaaccgtctatatttt 48506502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 52282459 - 52282400
Alignment:
Q  189 atccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctatttttt 248  Q
    ||||||| ||||||||||||||||||||| |||| |||||||  |||| ||| |||||||    
T  52282459 atccgttgacaccaggtgtcaacggattcattgacaccaaattacaaccgtcaatttttt 52282400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 231
Target Start/End: Original strand, 13477055 - 13477105
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatc 231  Q
    |||||| |||||||| |||||||||||||||| |||| |||| ||||||||    
T  13477055 gagtcaggatccgttgacaccaggtgtcaacgaattcattgacaccaaatc 13477105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 231
Target Start/End: Original strand, 20212986 - 20213028
Alignment:
Q  189 atccgttaacaccaggtgtcaacggattcgttgataccaaatc 231  Q
    ||||||| |||||||||||||||| ||||||||| ||||||||    
T  20212986 atccgttgacaccaggtgtcaacgaattcgttgacaccaaatc 20213028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 230
Target Start/End: Original strand, 37987238 - 37987280
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaat 230  Q
    |||||||| |||||||||||||| ||||||||||| |||||||    
T  37987238 gatccgttgacaccaggtgtcaatggattcgttgacaccaaat 37987280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 40872856 - 40872814
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaat 230  Q
    |||||||| ||||||||||||||||||||| |||| |||||||    
T  40872856 gatccgttgacaccaggtgtcaacggattcattgacaccaaat 40872814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 48765124 - 48765074
Alignment:
Q  182 agtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatct 232  Q
    ||||| ||||| || |||||||||||||| ||||||||||| |||||||||    
T  48765124 agtcaggatccattgacaccaggtgtcaatggattcgttgacaccaaatct 48765074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 51827548 - 51827498
Alignment:
Q  182 agtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatct 232  Q
    ||||| |||||||| ||||| |||||||||||||||||||  |||||||||    
T  51827548 agtcaagatccgttgacacctggtgtcaacggattcgttgtcaccaaatct 51827498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 52281761 - 52281819
Alignment:
Q  178 agagagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||||||  ||||||| | ||| |||||||||||||||||||| |||| ||||||||    
T  52281761 agagagtcagaatccgttgatacctggtgtcaacggattcgttgacaccagatctcaac 52281819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 236
Target Start/End: Complemental strand, 29856716 - 29856683
Alignment:
Q  203 ggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||||||||||||||||| |||||||||||||    
T  29856716 ggtgtcaacggattcgttgacaccaaatctcaac 29856683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 230
Target Start/End: Complemental strand, 44699859 - 44699826
Alignment:
Q  197 acaccaggtgtcaacggattcgttgataccaaat 230  Q
    |||||||||||||||||||||||||| |||||||    
T  44699859 acaccaggtgtcaacggattcgttgacaccaaat 44699826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 232
Target Start/End: Complemental strand, 48649226 - 48649177
Alignment:
Q  183 gtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatct 232  Q
    |||| ||||| || ||||||||||||||| |||||||||| |||||||||    
T  48649226 gtcaggatccattgacaccaggtgtcaacagattcgttgacaccaaatct 48649177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 46149634 - 46149678
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatct 232  Q
    ||||| || |||||||||||||| ||||||||||| |||||||||    
T  46149634 gatccattgacaccaggtgtcaatggattcgttgacaccaaatct 46149678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 51469327 - 51469283
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatct 232  Q
    |||||||| ||| || ||||||||||||||||||| |||||||||    
T  51469327 gatccgttgacatcaagtgtcaacggattcgttgacaccaaatct 51469283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 289
Target Start/End: Complemental strand, 3291581 - 3291483
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctattttttaaaatcaaaagcttataattgtttactaaatcaactcac 287  Q
    |||| ||| ||||||| |||||||| |||||   | ||||||||||||| |||||||||||||||||||| ||| |||||| ||||| ||||||||||||    
T  3291581 gatctgttgacaccagatgtcaacgtattcg---acaccaaatctcaaccgtctattttttaaaatcaaaggctaataattatttacgaaatcaactcac 3291485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 181 - 246
Target Start/End: Complemental strand, 26654432 - 26654367
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctatttt 246  Q
    |||||| |||||||| |||||||||||||| ||||||||||| ||||||||| ||| |||||||||    
T  26654432 gagtcaagatccgttgacaccaggtgtcaatggattcgttgacaccaaatcttaaccgtctatttt 26654367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 41974638 - 41974691
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctca 234  Q
    |||||| |||||||| |||||||||||||||||||||||||| |||||||||||    
T  41974638 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctca 41974691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 38576349 - 38576301
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||    
T  38576349 gatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaac 38576301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 246
Target Start/End: Original strand, 22320368 - 22320437
Alignment:
Q  177 gagagagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctatttt 246  Q
    |||||||||| |||||||| |  ||||||||||||||||||||||| ||||||||| ||  |||||||||    
T  22320368 gagagagtcaggatccgttgatgccaggtgtcaacggattcgttgacaccaaatcttaatcgtctatttt 22320437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 232
Target Start/End: Complemental strand, 3165176 - 3165125
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatct 232  Q
    |||||| |||||||| ||| |||||||||||||||||||||| |||||||||    
T  3165176 gagtcaggatccgttgacatcaggtgtcaacggattcgttgacaccaaatct 3165125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 232
Target Start/End: Original strand, 31641505 - 31641560
Alignment:
Q  177 gagagagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatct 232  Q
    |||||||||| ||||| || |||||||||||||| ||||||||||| |||||||||    
T  31641505 gagagagtcaggatccattgacaccaggtgtcaatggattcgttgacaccaaatct 31641560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 8373748 - 8373698
Alignment:
Q  180 agagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaat 230  Q
    ||||||| |||||||| |||||| ||||||||||||||||||| |||||||    
T  8373748 agagtcaggatccgttgacaccaagtgtcaacggattcgttgacaccaaat 8373698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 242
Target Start/End: Original strand, 31602021 - 31602075
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtcta 242  Q
    |||| ||| |||||||||||||||| ||||||||| ||||||||||||| |||||    
T  31602021 gatcggttgacaccaggtgtcaacgaattcgttgacaccaaatctcaaccgtcta 31602075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 268
Target Start/End: Original strand, 37064815 - 37064900
Alignment:
Q  182 agtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctattttttaaaatcaaaagcttataatt 268  Q
    ||||| |||| ||| |||||||||||||||| |||| |||| |||||||| |||| ||| |||||||  ||||||||||| ||||||    
T  37064815 agtcaggatctgttgacaccaggtgtcaacgaattcattgacaccaaatcacaaccgtcaatttttt-taatcaaaagctaataatt 37064900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 37732823 - 37732872
Alignment:
Q  180 agagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaa 229  Q
    ||||||| |||||||| ||||| |||||||||||||||||||| ||||||    
T  37732823 agagtcaggatccgttgacacctggtgtcaacggattcgttgacaccaaa 37732872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 245
Target Start/End: Original strand, 8298265 - 8298309
Alignment:
Q  201 caggtgtcaacggattcgttgataccaaatctcaactgtctattt 245  Q
    ||||||| |||||||||||||| ||||||||||||| ||||||||    
T  8298265 caggtgttaacggattcgttgacaccaaatctcaaccgtctattt 8298309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 257
Target Start/End: Complemental strand, 31642141 - 31642065
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctattttttaaaatcaaa 257  Q
    |||||| ||||| || ||||||| |||||||| ||||||||| ||||||||||||| ||| ||| |||  |||||||    
T  31642141 gagtcaggatccattgacaccagatgtcaacgaattcgttgacaccaaatctcaaccgtcgattgtttttaatcaaa 31642065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 32414571 - 32414527
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatct 232  Q
    |||| ||| |||||||||||||||||||||||||| |||||||||    
T  32414571 gatctgttgacaccaggtgtcaacggattcgttgacaccaaatct 32414527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 8997028 - 8996973
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||| |||||||| | ||||||||||||| |||| ||||| |||||||||||||    
T  8997028 gagtcaggatccgttgataccaggtgtcaactgatttgttgacaccaaatctcaac 8996973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 230
Target Start/End: Original strand, 8372918 - 8372960
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaat 230  Q
    |||||||| ||||| |||||||||||||||||||| |||||||    
T  8372918 gatccgttgacacctggtgtcaacggattcgttgacaccaaat 8372960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 231
Target Start/End: Original strand, 9197101 - 9197143
Alignment:
Q  189 atccgttaacaccaggtgtcaacggattcgttgataccaaatc 231  Q
    ||||||| |||||||||||||||| ||||||||| ||||||||    
T  9197101 atccgttgacaccaggtgtcaacgaattcgttgacaccaaatc 9197143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 232
Target Start/End: Original strand, 11686241 - 11686275
Alignment:
Q  198 caccaggtgtcaacggattcgttgataccaaatct 232  Q
    ||||||||||||||||||||||||| |||||||||    
T  11686241 caccaggtgtcaacggattcgttgacaccaaatct 11686275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 231
Target Start/End: Original strand, 26652291 - 26652341
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatc 231  Q
    |||||| |||||||| |||||||||||||||| ||||||| | ||||||||    
T  26652291 gagtcaggatccgttgacaccaggtgtcaacgaattcgttaacaccaaatc 26652341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 231
Target Start/End: Complemental strand, 32979882 - 32979828
Alignment:
Q  177 gagagagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatc 231  Q
    |||||||||| |||||||| |||||||||||||||| ||| ||| | ||||||||    
T  32979882 gagagagtcaggatccgttgacaccaggtgtcaacgaatttgttaacaccaaatc 32979828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 261
Target Start/End: Original strand, 38628258 - 38628328
Alignment:
Q  191 ccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctattttttaaaatcaaaagct 261  Q
    ||||| ||||||||| |||||||||||||||| || |||||| ||| || ||||||||   ||||||||||    
T  38628258 ccgttgacaccaggtatcaacggattcgttgacacaaaatcttaaccgtttattttttttgatcaaaagct 38628328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 248
Target Start/End: Complemental strand, 45967 - 45907
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctatttttt 248  Q
    ||||||||  ||||||||||||| | ||||||||| ||||||| ||||| |||||| ||||    
T  45967 gatccgttggcaccaggtgtcaatgaattcgttgacaccaaatatcaaccgtctatatttt 45907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 27441471 - 27441515
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatct 232  Q
    |||||||| |||||||||||||||| ||||||||| | |||||||    
T  27441471 gatccgttgacaccaggtgtcaacgaattcgttgacatcaaatct 27441515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 28929850 - 28929894
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatct 232  Q
    ||||| || ||||||| |||||||||||||||||| |||||||||    
T  28929850 gatccattgacaccagatgtcaacggattcgttgacaccaaatct 28929894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 37025011 - 37025058
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||||| ||||||| ||||||| |||||||||| |||||||||||||    
T  37025011 gatccgttgacaccag-tgtcaacagattcgttgacaccaaatctcaac 37025058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 180 - 261
Target Start/End: Complemental strand, 13263572 - 13263491
Alignment:
Q  180 agagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctattttttaaaatcaaaagct 261  Q
    ||||||| |||||||| |||||||||||||| ||||||||||| ||||||||||||| ||||||  | || |||||||||||    
T  13263572 agagtcaggatccgttgacaccaggtgtcaatggattcgttgacaccaaatctcaaccgtctatagtctataatcaaaagct 13263491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 192 - 243
Target Start/End: Complemental strand, 46812231 - 46812180
Alignment:
Q  192 cgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctat 243  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  46812231 cgttaacaccaggtgtcaacggattcgttgacaccaaatctcaaccgtctat 46812180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 25469142 - 25469090
Alignment:
Q  180 agagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatct 232  Q
    ||||||| |||||||| |||||||||||||||||||||||||| |||||||||    
T  25469142 agagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatct 25469090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 30663354 - 30663410
Alignment:
Q  180 agagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    ||||||| |||||||| ||||||||| |||||||||||||||| |||||||||||||    
T  30663354 agagtcaggatccgttgacaccaggtatcaacggattcgttgacaccaaatctcaac 30663410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 34309278 - 34309230
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||    
T  34309278 gatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaac 34309230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 235
Target Start/End: Complemental strand, 4433895 - 4433848
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaa 235  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||    
T  4433895 gatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaa 4433848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 30664031 - 30663976
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||| |||||||| ||||| |||||||||||||||||||| |||||||||||||    
T  30664031 gagtcaggatccgttgacacctggtgtcaacggattcgttgacaccaaatctcaac 30663976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 49680815 - 49680861
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctca 234  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||    
T  49680815 gatccgttgacaccaggtgtcaacggattcgttgacaccaaatctca 49680861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 37853190 - 37853141
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaat 230  Q
    |||||| |||||||||||| |||||||||||||||||||||| |||||||    
T  37853190 gagtcaggatccgttaacatcaggtgtcaacggattcgttgacaccaaat 37853141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 181 - 249
Target Start/End: Original strand, 7406242 - 7406310
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctatttttta 249  Q
    |||||| |||||||| ||||||||||| |||| ||||||||| |||||||||||||  ||||| |||||    
T  7406242 gagtcaggatccgttgacaccaggtgttaacgaattcgttgacaccaaatctcaaccctctatctttta 7406310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 10121600 - 10121552
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||||| |||||||||||||||||||| ||||| |||||||||||||    
T  10121600 gatccgttgacaccaggtgtcaacggattggttgacaccaaatctcaac 10121552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 13262837 - 13262885
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||||| |||||||||||||||| ||||||||| |||||||||||||    
T  13262837 gatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctcaac 13262885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 181 - 257
Target Start/End: Original strand, 25468507 - 25468583
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctattttttaaaatcaaa 257  Q
    |||||| ||||| || ||||||||||||||||||||| |||| ||||||||||||| ||| ||| |||  |||||||    
T  25468507 gagtcaggatccattgacaccaggtgtcaacggattcattgacaccaaatctcaaccgtcgattgtttttaatcaaa 25468583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 28181537 - 28181593
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctatt 244  Q
    |||||||| ||||| |||||||||| ||||||||| ||||||||||||| |||||||    
T  28181537 gatccgttgacacctggtgtcaacgaattcgttgacaccaaatctcaaccgtctatt 28181593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 30932843 - 30932795
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||||| |||||||||||||||||||||||||  |||||||||||||    
T  30932843 gatccgttgacaccaggtgtcaacggattcgttggcaccaaatctcaac 30932795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 235
Target Start/End: Complemental strand, 4439254 - 4439207
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaa 235  Q
    |||||||| ||||| |||||||||||||||||||| ||||||||||||    
T  4439254 gatccgttgacacctggtgtcaacggattcgttgacaccaaatctcaa 4439207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 8987787 - 8987842
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||| |||| ||| ||| |||||||||||||||||||||| |||||||||||||    
T  8987787 gagtcaggatcggttgacatcaggtgtcaacggattcgttgacaccaaatctcaac 8987842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 236
Target Start/End: Original strand, 34308466 - 34308525
Alignment:
Q  177 gagagagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    ||||||| || |||||||| |||||||||||||||| ||||||||| ||||||| |||||    
T  34308466 gagagagacaggatccgttgacaccaggtgtcaacgtattcgttgacaccaaatttcaac 34308525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 234
Target Start/End: Complemental strand, 7559247 - 7559201
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctca 234  Q
    |||||||| ||||||||||||||||||| |||||| |||||||||||    
T  7559247 gatccgttgacaccaggtgtcaacggatccgttgacaccaaatctca 7559201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 231
Target Start/End: Complemental strand, 19172630 - 19172580
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatc 231  Q
    |||||| ||||| || |||||||||||||||||||||||||| ||||||||    
T  19172630 gagtcaggatccattgacaccaggtgtcaacggattcgttgacaccaaatc 19172580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 246
Target Start/End: Complemental strand, 28182120 - 28182062
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctatttt 246  Q
    |||| ||| ||||||||||||||||||||| |||| ||||||||| ||| |||||||||    
T  28182120 gatctgttgacaccaggtgtcaacggattctttgacaccaaatcttaaccgtctatttt 28182062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 168894 - 168942
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||||| ||||||||||||| ||||||| |||| |||||||||||||    
T  168894 gatccgttgacaccaggtgtcagcggattcattgacaccaaatctcaac 168942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 8988596 - 8988548
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||| | ||||||||||||||||||||| |||| |||||||||||||    
T  8988596 gatccgctgacaccaggtgtcaacggattccttgacaccaaatctcaac 8988548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 27256760 - 27256712
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||||| |||||||||||||||| ||||||||| ||||||| |||||    
T  27256760 gatccgttgacaccaggtgtcaacgtattcgttgacaccaaatttcaac 27256712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 36389773 - 36389837
Alignment:
Q  182 agtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctatttt 246  Q
    ||||| |||||||| ||||| |||||||||||||| | ||| |||||||||| || |||||||||    
T  36389773 agtcaggatccgttgacacctggtgtcaacggatttgctgacaccaaatctcgaccgtctatttt 36389837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 47967866 - 47967910
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatct 232  Q
    ||||| || |||||||||||||||||||||||||| |||||||||    
T  47967866 gatccattgacaccaggtgtcaacggattcgttgacaccaaatct 47967910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 231
Target Start/End: Original strand, 10120787 - 10120830
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatc 231  Q
    |||||||| |||||||||||||||||||| ||||| ||||||||    
T  10120787 gatccgttgacaccaggtgtcaacggattggttgacaccaaatc 10120830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 235
Target Start/End: Original strand, 11548804 - 11548851
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaa 235  Q
    |||||||| ||||||||||||||| |||||||||| || |||||||||    
T  11548804 gatccgttgacaccaggtgtcaacagattcgttgacactaaatctcaa 11548851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 231
Target Start/End: Complemental strand, 17172710 - 17172667
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatc 231  Q
    |||||||| ||||||||||||||||||||||||||  |||||||    
T  17172710 gatccgttgacaccaggtgtcaacggattcgttgacgccaaatc 17172667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 231
Target Start/End: Original strand, 24991974 - 24992017
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatc 231  Q
    ||||| || |||||||||||||||||||||||||| ||||||||    
T  24991974 gatccattgacaccaggtgtcaacggattcgttgacaccaaatc 24992017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 242
Target Start/End: Original strand, 32038492 - 32038535
Alignment:
Q  199 accaggtgtcaacggattcgttgataccaaatctcaactgtcta 242  Q
    |||||||||||||| ||||||||| ||||||||||||| |||||    
T  32038492 accaggtgtcaacgaattcgttgacaccaaatctcaaccgtcta 32038535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 7558453 - 7558499
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctca 234  Q
    |||||||| |||||| ||||||||||||| ||||| |||||||||||    
T  7558453 gatccgttgacaccaagtgtcaacggatttgttgacaccaaatctca 7558499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 234
Target Start/End: Complemental strand, 11704856 - 11704810
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctca 234  Q
    ||||| || |||||| ||||||||||||||||||| |||||||||||    
T  11704856 gatccattgacaccaagtgtcaacggattcgttgacaccaaatctca 11704810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 230
Target Start/End: Original strand, 17171935 - 17171977
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaat 230  Q
    |||||||| |||||||||||||||| ||||||||| |||||||    
T  17171935 gatccgttgacaccaggtgtcaacgaattcgttgacaccaaat 17171977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 230
Target Start/End: Original strand, 45818025 - 45818067
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaat 230  Q
    |||||||| ||||||||||||||||||||| |||| |||||||    
T  45818025 gatccgttgacaccaggtgtcaacggattcattgacaccaaat 45818067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 222
Target Start/End: Complemental strand, 46391914 - 46391880
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttga 222  Q
    |||||||| ||||||||||||||||||||||||||    
T  46391914 gatccgttgacaccaggtgtcaacggattcgttga 46391880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 23026600 - 23026645
Alignment:
Q  201 caggtgtcaacggattcgttgataccaaatctcaactgtctatttt 246  Q
    |||||||||||||||||||||| | |||||||||||| | ||||||    
T  23026600 caggtgtcaacggattcgttgacatcaaatctcaactatttatttt 23026645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 169675 - 169627
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||||| |||||||||||||||| |||  |||| |||||||||||||    
T  169675 gatccgttgacaccaggtgtcaacgaatttattgacaccaaatctcaac 169627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 177 - 273
Target Start/End: Complemental strand, 22560626 - 22560530
Alignment:
Q  177 gagagagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctattttttaaaatcaaaagcttataattgttta 273  Q
    |||||||||| |||||||| ||| |||||||||||||||||||||| ||||||||||||| ||  ||| | |  ||||||||||||| ||| |||||    
T  22560626 gagagagtcaggatccgttgacatcaggtgtcaacggattcgttgacaccaaatctcaaccgtacattatatttaatcaaaagcttacaatagttta 22560530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 180 - 259
Target Start/End: Original strand, 1296376 - 1296455
Alignment:
Q  180 agagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctattttttaaaatcaaaag 259  Q
    ||||||| |||||||| |||||||||||||||| ||||||||| |||||||||||||  || |||||||  |||||||||    
T  1296376 agagtcaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctcaaccatcaattttttttaatcaaaag 1296455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 259
Target Start/End: Complemental strand, 9276384 - 9276306
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctattttttaaaatcaaaag 259  Q
    |||||| |||||||| |||||||||||||||| ||||||||| |||||||||||||  || |||||||  |||||||||    
T  9276384 gagtcaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctcaaccatcaattttttttaatcaaaag 9276306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 1297170 - 1297122
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||    
T  1297170 gatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaac 1297122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 9275591 - 9275639
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||    
T  9275591 gatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaac 9275639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 29719451 - 29719499
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||    
T  29719451 gatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaac 29719499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 36237626 - 36237684
Alignment:
Q  178 agagagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    ||||||||| |||||||| ||||||||||||||||||||| |||| ||||||| |||||    
T  36237626 agagagtcaggatccgttgacaccaggtgtcaacggattcattgacaccaaatttcaac 36237684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 40252025 - 40252070
Alignment:
Q  186 atgatccgttaacaccaggtgtcaacggattcgttgataccaaatc 231  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||    
T  40252025 atgatccattaacaccaggtgtcaacggattcgttgacaccaaatc 40252070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 11750262 - 11750310
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    ||||| || |||||||||||||||||||||||||| |||||||||||||    
T  11750262 gatccattgacaccaggtgtcaacggattcgttgacaccaaatctcaac 11750310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 29512369 - 29512433
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctattt 245  Q
    ||||||||||||||| ||||| |||||||||| ||| ||||| ||||||||||||  ||||||||    
T  29512369 gagtcatgatccgttgacacctggtgtcaacgaatttgttgacaccaaatctcaatagtctattt 29512433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 246
Target Start/End: Complemental strand, 18174717 - 18174659
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctatttt 246  Q
    |||||||| ||| |||||||||||| ||||||||| ||||||||||||| || ||||||    
T  18174717 gatccgttgacatcaggtgtcaacgaattcgttgacaccaaatctcaaccgtttatttt 18174659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 246
Target Start/End: Original strand, 42459048 - 42459114
Alignment:
Q  180 agagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctatttt 246  Q
    ||||||| ||||| || ||||||||||||||| |||||||||| | ||||||||||  |||||||||    
T  42459048 agagtcaggatccattgacaccaggtgtcaacagattcgttgacatcaaatctcaatcgtctatttt 42459114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 23343778 - 23343835
Alignment:
Q  182 agtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgt 239  Q
    ||||| |||| ||| ||||||| |||||||||||||||||| | ||||||||||||||    
T  23343778 agtcaggatctgttgacaccagatgtcaacggattcgttgacatcaaatctcaactgt 23343835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 236
Target Start/End: Complemental strand, 42182659 - 42182614
Alignment:
Q  191 ccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    ||||| |||||||||||||| ||||||||||| |||||||||||||    
T  42182659 ccgttgacaccaggtgtcaagggattcgttgacaccaaatctcaac 42182614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 8669243 - 8669195
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||| ||||||||||||||||||| |||||||||| |||||||| ||||    
T  8669243 gatctgttaacaccaggtgtcaacagattcgttgacaccaaatcccaac 8669195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 9540336 - 9540380
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatct 232  Q
    |||||||| |||||||||||||||| ||||||||| |||||||||    
T  9540336 gatccgttgacaccaggtgtcaacgaattcgttgacaccaaatct 9540380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 12725662 - 12725614
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||||| |||||||||||||||||||| ||||| |||||||| ||||    
T  12725662 gatccgttgacaccaggtgtcaacggatttgttgacaccaaatcccaac 12725614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 15902929 - 15902885
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatct 232  Q
    |||||||| |||||||||||||||||||||||||| || ||||||    
T  15902929 gatccgttgacaccaggtgtcaacggattcgttgacacaaaatct 15902885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 22301917 - 22301873
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatct 232  Q
    |||||||| |||||||||||||||| ||||||||| |||||||||    
T  22301917 gatccgttgacaccaggtgtcaacgaattcgttgacaccaaatct 22301873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 24755047 - 24754995
Alignment:
Q  182 agtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctca 234  Q
    ||||| |||||||| ||||||||||||||  |||||||||| |||||||||||    
T  24755047 agtcaggatccgttgacaccaggtgtcaattgattcgttgaaaccaaatctca 24754995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 29513194 - 29513150
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatct 232  Q
    ||||| || |||||||||||||||||||||||||| |||||||||    
T  29513194 gatccattgacaccaggtgtcaacggattcgttgacaccaaatct 29513150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 8542586 - 8542547
Alignment:
Q  197 acaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||| ||||||||||||||||||||| |||||||||||||    
T  8542586 acactaggtgtcaacggattcgttgacaccaaatctcaac 8542547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 11007245 - 11007284
Alignment:
Q  197 acaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||||||||||||||||||||||| || ||||||||||    
T  11007245 acaccaggtgtcaacggattcgttgacactaaatctcaac 11007284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 232
Target Start/End: Complemental strand, 16693012 - 16692977
Alignment:
Q  197 acaccaggtgtcaacggattcgttgataccaaatct 232  Q
    |||||||||||||||||||||||||| |||||||||    
T  16693012 acaccaggtgtcaacggattcgttgacaccaaatct 16692977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 235
Target Start/End: Complemental strand, 29559467 - 29559420
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaa 235  Q
    |||| ||| |||||||||||||||| ||||||||| ||||||||||||    
T  29559467 gatctgttgacaccaggtgtcaacgaattcgttgacaccaaatctcaa 29559420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 18174104 - 18174162
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctatttt 246  Q
    |||||||| ||||||||||| |||| ||||||||| |||||||| |||| || ||||||    
T  18174104 gatccgttgacaccaggtgttaacgaattcgttgacaccaaatcgcaaccgtttatttt 18174162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 24933831 - 24933889
Alignment:
Q  178 agagagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||| || |||||||| ||||| |||||||||| |||| |||| |||||||||||||    
T  24933831 agagagacaggatccgttgacacctggtgtcaacgaattcattgacaccaaatctcaac 24933889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 230
Target Start/End: Original strand, 27177917 - 27177959
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaat 230  Q
    |||||||| |||||||||||||||| ||||||||| |||||||    
T  27177917 gatccgttgacaccaggtgtcaacgaattcgttgacaccaaat 27177959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 234
Target Start/End: Complemental strand, 24121344 - 24121291
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctca 234  Q
    |||||| ||||| || ||||||||||||||| ||||| |||| |||||||||||    
T  24121344 gagtcaggatccattgacaccaggtgtcaacagattcattgagaccaaatctca 24121291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 15774207 - 15774255
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||||| ||||| |||||||||| ||| ||||| |||||||||||||    
T  15774207 gatccgttgacacctggtgtcaacgaatttgttgacaccaaatctcaac 15774255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 19918776 - 19918712
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaactgtctattt 245  Q
    |||||| |||||||| ||| | | |||||||||||||||||| | |||||||||||  |||||||    
T  19918776 gagtcaggatccgttgacatctgatgtcaacggattcgttgacatcaaatctcaaccttctattt 19918712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 23856640 - 23856688
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||||| ||||| ||||||||||||||  |||| |||||||||||||    
T  23856640 gatccgttgacacctggtgtcaacggattgattgacaccaaatctcaac 23856688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 26752770 - 26752726
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatct 232  Q
    |||||||| |||||||||||||||| ||||||||| | |||||||    
T  26752770 gatccgttgacaccaggtgtcaacgaattcgttgacatcaaatct 26752726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 34812908 - 34812860
Alignment:
Q  183 gtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatc 231  Q
    |||| |||||||| ||||||| |||||||||||||||| | ||||||||    
T  34812908 gtcaggatccgttgacaccagttgtcaacggattcgttaacaccaaatc 34812860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 38361076 - 38361120
Alignment:
Q  192 cgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||| ||| |||||||||||| ||||||||| |||||||||||||    
T  38361076 cgttgacatcaggtgtcaacgaattcgttgacaccaaatctcaac 38361120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 26589 - 26644
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||| |||||||| |||||||||||||||||||||||||| |||||||| ||||    
T  26589 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatcacaac 26644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 236
Target Start/End: Complemental strand, 23787 - 23728
Alignment:
Q  177 gagagagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||||| | ||||| || ||||||| |||||||||||||||||| |||||||||||||    
T  23787 gagagagttaggatccattgacaccagttgtcaacggattcgttgacaccaaatctcaac 23728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2007 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold2007
Description:

Target: scaffold2007; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 748 - 802
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaa 235  Q
    |||||| ||||| || ||||||||| |||||||||||||||| ||||||||||||    
T  748 gagtcaggatccattgacaccaggtttcaacggattcgttgacaccaaatctcaa 802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 22118 - 22076
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaat 230  Q
    |||||||| |||||||||||||||||||||||||| |||||||    
T  22118 gatccgttgacaccaggtgtcaacggattcgttgacaccaaat 22076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 15020 - 15075
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||| |||||||| |||||  |||||||||||||| |||| |||||||||||||    
T  15020 gagtcaggatccgttgacacctagtgtcaacggattcattgacaccaaatctcaac 15075  T

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Target: scaffold0085; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 15897 - 15858
Alignment:
Q  197 acaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||||||||||||||| ||||||||| |||||||||||||    
T  15897 acaccaggtgtcaacgaattcgttgacaccaaatctcaac 15858  T

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Target: scaffold0085; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 236
Target Start/End: Original strand, 15080 - 15134
Alignment:
Q  182 agtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    ||||| |||||||| |||||  |||||||||||||| |||| |||||||||||||    
T  15080 agtcaggatccgttgacacctagtgtcaacggattcattgacaccaaatctcaac 15134  T

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Target: scaffold0504 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 5434 - 5385
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaat 230  Q
    |||||| |||||||| |||||||||||||||||||| ||||| |||||||    
T  5434 gagtcaggatccgttgacaccaggtgtcaacggatttgttgacaccaaat 5385  T

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Target: scaffold0096 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 230
Target Start/End: Original strand, 39901 - 39942
Alignment:
Q  189 atccgttaacaccaggtgtcaacggattcgttgataccaaat 230  Q
    ||||||| |||||||||||||||||||||||||| |||||||    
T  39901 atccgttgacaccaggtgtcaacggattcgttgacaccaaat 39942  T

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Target: scaffold1213 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1213
Description:

Target: scaffold1213; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 237
Target Start/End: Original strand, 1893 - 1949
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaact 237  Q
    |||||| |||||||| ||| ||| |||||||||||||||||| |||||||| |||||    
T  1893 gagtcaagatccgttgacagcagatgtcaacggattcgttgacaccaaatcacaact 1949  T

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Target: scaffold0002 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 428957 - 428901
Alignment:
Q  180 agagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    ||||||| |||||||| ||||| ||| |||||| ||||||||| |||||||||||||    
T  428957 agagtcaggatccgttgacacccggtatcaacgaattcgttgacaccaaatctcaac 428901  T

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Target: scaffold0418 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 234
Target Start/End: Complemental strand, 6939 - 6886
Alignment:
Q  181 gagtcatgatccgttaacaccaggtgtcaacggattcgttgataccaaatctca 234  Q
    |||||| |||||||| |||||||||||||||  ||||||||| |||||| ||||    
T  6939 gagtcaggatccgttgacaccaggtgtcaacaaattcgttgacaccaaacctca 6886  T

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Target: scaffold1207 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 1591 - 1639
Alignment:
Q  188 gatccgttaacaccaggtgtcaacggattcgttgataccaaatctcaac 236  Q
    |||| ||| |||||||||||||||| ||||||||| |||||||| ||||    
T  1591 gatcggttgacaccaggtgtcaacgaattcgttgacaccaaatcccaac 1639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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