View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8427_high_18 (Length: 275)
Name: NF8427_high_18
Description: NF8427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8427_high_18 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 11 - 258
Target Start/End: Complemental strand, 29462584 - 29462337
Alignment:
| Q |
11 |
agtcatggcacgaaatattcttcttctttctgggattgttgtaattcttacctatgtgtctataatcgaagctacaatattgttaaccaatgatgatatt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
29462584 |
agtcatggcacgaaatattcttcttctttctgggattgttgtaattcttacctatgtggctataattgaagctacaatattgttaaccaatgatgatatt |
29462485 |
T |
|
| Q |
111 |
aacaattccctcaatcgaagtagtttcccagaaggttttatttttggaacagcatcatcagcttaccaggtactccaagtatttcaatattctttcacta |
210 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
29462484 |
aacaattccctcaatcgtagtagtttcccagaaggttttatttttggaacagcatcatcagcttaccaggtactccaagtatttcaatcttctttcacta |
29462385 |
T |
|
| Q |
211 |
ttatgtgcatgttagatgttatatgtcgaatatatttgatgacgtaac |
258 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29462384 |
ttatgtacatgttagatgttatatgtcgaatatatttgatgacgtaac |
29462337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 4 - 184
Target Start/End: Original strand, 29420732 - 29420912
Alignment:
| Q |
4 |
aaactatagtcatggcacgaaatattcttcttctttctgggattgttgtaattcttacctatgtgtctataatcgaagctacaatattgttaaccaatga |
103 |
Q |
| |
|
||||||||||||||| | |||| |||||||||| | | || ||||| ||||||| | |||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
29420732 |
aaactatagtcatggtattaaatcttcttcttctcccaagaatcgttgtgattcttagttgtgtggctataattgaagctacaatattgttaaccaatga |
29420831 |
T |
|
| Q |
104 |
tgatattaacaattccctcaatcgaagtagtttcccagaaggttttatttttggaacagcatcatcagcttaccaggtact |
184 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
29420832 |
tgatattaacaattccctcaatcgtagtagtttcccagaaggttttatttttggaacagcttcatcagcttaccaggtact |
29420912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 129 - 211
Target Start/End: Original strand, 29608053 - 29608135
Alignment:
| Q |
129 |
agtagtttcccagaaggttttatttttggaacagcatcatcagcttaccaggtactccaagtatttcaatattctttcactat |
211 |
Q |
| |
|
|||||||||| |||| |||| |||| ||||| ||| |||||||||||||||||||||||| ||||| |||||||||| ||||| |
|
|
| T |
29608053 |
agtagtttcctagaatgtttaatttctggaaaagcttcatcagcttaccaggtactccaaatattttaatattcttttactat |
29608135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 205
Target Start/End: Original strand, 29404531 - 29404618
Alignment:
| Q |
118 |
ccctcaatcgaagtagtttcccagaaggttttatttttggaacagcatcatcagcttaccaggtactccaagtatttcaatattcttt |
205 |
Q |
| |
|
||||||| || |||||||| ||||| ||||| |||||||||||||| || ||||||||||||||| ||||| |||||||| ||||| |
|
|
| T |
29404531 |
ccctcaaccggagtagttttccagatggtttcatttttggaacagcttcttcagcttaccaggtagtccaaaattttcaataatcttt |
29404618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 29607983 - 29608038
Alignment:
| Q |
5 |
aactatagtcatggcacgaaatattcttcttctttctgggattgttgtaattctta |
60 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| || ||||||| ||||||| |
|
|
| T |
29607983 |
aactatagtcatggcattaaatattcttcttctttcaggagttgttgtgattctta |
29608038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 8088979 - 8089037
Alignment:
| Q |
123 |
aatcgaagtagtttcccagaaggttttatttttggaacagcatcatcagcttaccaggt |
181 |
Q |
| |
|
|||| ||| ||||||||||||| |||| |||||||||||||||| |||||||||||||| |
|
|
| T |
8088979 |
aatcaaagcagtttcccagaagattttgtttttggaacagcatcttcagcttaccaggt |
8089037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University