View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8427_high_23 (Length: 227)

Name: NF8427_high_23
Description: NF8427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8427_high_23
NF8427_high_23
[»] chr7 (14 HSPs)
chr7 (1-227)||(25176340-25176565)
chr7 (168-227)||(39316345-39316404)
chr7 (139-209)||(27338228-27338298)
chr7 (138-227)||(26871737-26871825)
chr7 (142-227)||(34299795-34299880)
chr7 (167-227)||(38362249-38362309)
chr7 (167-227)||(43492254-43492314)
chr7 (142-221)||(5907794-5907871)
chr7 (167-225)||(46716173-46716231)
chr7 (174-227)||(19619993-19620046)
chr7 (175-223)||(5482463-5482511)
chr7 (171-227)||(24610890-24610946)
chr7 (142-178)||(27076232-27076268)
chr7 (142-178)||(27202033-27202069)
[»] chr4 (20 HSPs)
chr4 (1-105)||(4781066-4781170)
chr4 (169-227)||(49951742-49951800)
chr4 (144-215)||(41462020-41462091)
chr4 (146-227)||(53622278-53622357)
chr4 (135-227)||(52650742-52650834)
chr4 (144-227)||(23136559-23136642)
chr4 (142-209)||(24546778-24546844)
chr4 (146-227)||(53261531-53261612)
chr4 (135-215)||(8297833-8297913)
chr4 (168-227)||(27963166-27963226)
chr4 (168-227)||(49622998-49623057)
chr4 (169-227)||(2818355-2818413)
chr4 (167-221)||(17970804-17970858)
chr4 (173-227)||(45743315-45743369)
chr4 (169-227)||(50617492-50617550)
chr4 (140-209)||(24175468-24175537)
chr4 (142-227)||(47937833-47937917)
chr4 (167-227)||(21241121-21241181)
chr4 (137-201)||(32175397-32175461)
chr4 (171-227)||(36876109-36876165)
[»] chr8 (13 HSPs)
chr8 (144-227)||(1876534-1876617)
chr8 (136-227)||(44220762-44220851)
chr8 (148-227)||(2376780-2376859)
chr8 (142-216)||(31264966-31265040)
chr8 (168-227)||(11533227-11533286)
chr8 (142-202)||(24869383-24869443)
chr8 (142-181)||(40298850-40298889)
chr8 (169-227)||(18842307-18842365)
chr8 (143-209)||(25279899-25279965)
chr8 (169-227)||(30158114-30158172)
chr8 (142-215)||(27801290-27801363)
chr8 (174-227)||(37449541-37449594)
chr8 (167-227)||(12002261-12002321)
[»] chr1 (20 HSPs)
chr1 (144-227)||(33791791-33791874)
chr1 (133-227)||(40053253-40053347)
chr1 (132-227)||(35543455-35543550)
chr1 (144-227)||(39973863-39973946)
chr1 (142-227)||(49478781-49478867)
chr1 (168-225)||(37188576-37188633)
chr1 (167-227)||(42573821-42573881)
chr1 (142-209)||(5423816-5423883)
chr1 (129-227)||(48947160-48947258)
chr1 (142-227)||(3047836-3047921)
chr1 (142-227)||(34861264-34861349)
chr1 (183-227)||(1656446-1656490)
chr1 (184-227)||(290602-290645)
chr1 (169-227)||(27934781-27934839)
chr1 (142-216)||(33744198-33744272)
chr1 (142-227)||(48938-49023)
chr1 (142-227)||(16113888-16113973)
chr1 (142-227)||(31042970-31043055)
chr1 (142-227)||(31807832-31807917)
chr1 (183-227)||(51904621-51904665)
[»] chr3 (11 HSPs)
chr3 (146-227)||(48551013-48551094)
chr3 (137-227)||(45757893-45757983)
chr3 (173-227)||(12140145-12140199)
chr3 (144-227)||(24313522-24313605)
chr3 (168-227)||(28691976-28692035)
chr3 (136-216)||(54290840-54290920)
chr3 (139-216)||(43803936-43804012)
chr3 (173-210)||(45584395-45584432)
chr3 (143-227)||(11465677-11465761)
chr3 (140-204)||(50604020-50604084)
chr3 (171-227)||(54911199-54911255)
[»] chr2 (19 HSPs)
chr2 (168-227)||(4655013-4655072)
chr2 (167-227)||(24389675-24389735)
chr2 (173-227)||(9049202-9049256)
chr2 (137-226)||(21277517-21277606)
chr2 (144-227)||(30869614-30869695)
chr2 (168-227)||(33634850-33634909)
chr2 (146-227)||(6334724-6334805)
chr2 (143-227)||(6411426-6411510)
chr2 (167-227)||(12848524-12848584)
chr2 (187-227)||(42342541-42342581)
chr2 (167-221)||(3074074-3074128)
chr2 (169-227)||(12762923-12762981)
chr2 (142-216)||(32859754-32859828)
chr2 (169-227)||(33454964-33455022)
chr2 (166-227)||(6083954-6084015)
chr2 (166-227)||(30822772-30822833)
chr2 (142-227)||(565744-565830)
chr2 (137-181)||(2826054-2826098)
chr2 (142-209)||(13538364-13538432)
[»] chr6 (4 HSPs)
chr6 (142-227)||(13445783-13445868)
chr6 (167-209)||(1840977-1841019)
chr6 (145-227)||(3753147-3753229)
chr6 (141-227)||(33970378-33970464)
[»] scaffold0010 (1 HSPs)
scaffold0010 (167-227)||(26695-26755)
[»] chr5 (11 HSPs)
chr5 (173-227)||(38594983-38595037)
chr5 (142-215)||(8208148-8208221)
chr5 (135-227)||(34032142-34032234)
chr5 (141-227)||(10228288-10228372)
chr5 (141-215)||(30501204-30501278)
chr5 (141-215)||(30541547-30541621)
chr5 (174-227)||(21259470-21259523)
chr5 (186-227)||(27325876-27325917)
chr5 (143-187)||(10051700-10051744)
chr5 (171-227)||(14309139-14309195)
chr5 (168-212)||(39335665-39335709)
[»] scaffold0053 (1 HSPs)
scaffold0053 (167-227)||(5756-5816)


Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 25176565 - 25176340
Alignment:
Q  1 tgattttgtgtctggacttcaagtacgtaaaggaaatgactggatcactgttaagcctgtccctaatgcttttatcatcaacattggtgaccaaattcag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25176565 tgattttgtgtctggacttcaagtacgtaaaggaaatgactggatcactgttaagcctgtccctaatgcttttatcatcaacattggtgaccaaattcag 25176466  T
Q  101 gtcctacctctttctacaatgttagatatatatattttaaaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattatt 200  Q
    ||||||||||||||||||||| || | |||||||||||||||||||||||||||| ||||||||  ||||||||||| ||||||||||||||||||||||    
T  25176465 gtcctacctctttctacaatg-tatagatatatattttaaaggtcttgttaacgaatgtccctagggcactctttaaacatgttaaattagataattatt 25176367  T
Q  201 cttttaaaatgtcaaaattttcaattt 227  Q
    |||||||||||||||| ||||||||||    
T  25176366 cttttaaaatgtcaaatttttcaattt 25176340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 39316404 - 39316345
Alignment:
Q  168 cactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||||||||||||| ||||||||  |||||||||||  | ||||||||||||||||||||    
T  39316404 cactctttaagcatattaaattaagtaattattcttcaataatgtcaaaattttcaattt 39316345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 139 - 209
Target Start/End: Original strand, 27338228 - 27338298
Alignment:
Q  139 aaaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaa 209  Q
    ||||||||||| ||||||||| | |   |||||||||||||||| ||||||||| ||||||||||| ||||    
T  27338228 aaaggtcttgtgaacgagtgttcttggggcactctttaagcatgctaaattagaaaattattctttaaaaa 27338298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 227
Target Start/End: Original strand, 26871737 - 26871825
Alignment:
Q  138 taaaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||||| |||||||||||||||||   |||||| |||||||||| ||||| |  |||||||||||||||||| | ||| |||| |||||    
T  26871737 taaaggtattgttaacgagtgtcccgg-agcactatttaagcatgctaaataaagtaattattcttttaaaatttaaaagttttgaattt 26871825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 34299880 - 34299795
Alignment:
Q  142 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||||||||||||||| |||    ||||| |||||||||| || ||||   ||||||||||| ||||||||||| ||||||||||    
T  34299880 ggtcttgttaacgagtgcccccggggcactttttaagcatgctagattaagcaattattctttaaaaatgtcaaagttttcaattt 34299795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 38362249 - 38362309
Alignment:
Q  167 gcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||| ||||||||| ||||||||||||||||||| || ||||| | ||| ||||||||||    
T  38362249 gcactttttaagcattttaaattagataattattcattaaaaatattaaagttttcaattt 38362309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 43492314 - 43492254
Alignment:
Q  167 gcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||||||||||||||  |||||||  ||||||||||||  |||||||||||||| ||||||    
T  43492314 gcactctttaagcattctaaattaagtaattattctttagaaatgtcaaaatttacaattt 43492254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 221
Target Start/End: Original strand, 5907794 - 5907871
Alignment:
Q  142 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaatttt 221  Q
    ||||||||||||||||| |||||  |||||||||||||||  |||||||  |||||||| |||| |||||||||| ||||    
T  5907794 ggtcttgttaacgagtg-ccctagggcactctttaagcattctaaattaagtaattatt-tttttaaatgtcaaactttt 5907871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 225
Target Start/End: Original strand, 46716173 - 46716231
Alignment:
Q  167 gcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaat 225  Q
    ||||||||||| |||  ||||||| ||||||||||||| ||||| ||||| ||||||||    
T  46716173 gcactctttaaccattctaaattaaataattattctttaaaaatatcaaagttttcaat 46716231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 19619993 - 19620046
Alignment:
Q  174 ttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||||||| |||||||   ||||||||||| ||||||||||| ||||||||||    
T  19619993 ttaagcatgctaaattaagaaattattctttaaaaatgtcaaagttttcaattt 19620046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 5482511 - 5482463
Alignment:
Q  175 taagcatgttaaattagataattattcttttaaaatgtcaaaattttca 223  Q
    |||| ||| |||||||  |||||||||||||||||||||||| ||||||    
T  5482511 taagtatgctaaattaagtaattattcttttaaaatgtcaaagttttca 5482463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 24610946 - 24610890
Alignment:
Q  171 tctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||||| |||| ||||||| | ||||||||||||||||||| ||| |||| |||||    
T  24610946 tctttaaacatgctaaattaaacaattattcttttaaaatgttaaagttttgaattt 24610890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 178
Target Start/End: Complemental strand, 27076268 - 27076232
Alignment:
Q  142 ggtcttgttaacgagtgtccctatagcactctttaag 178  Q
    |||||||||||||||||||| || |||||||||||||    
T  27076268 ggtcttgttaacgagtgtccttagagcactctttaag 27076232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 178
Target Start/End: Original strand, 27202033 - 27202069
Alignment:
Q  142 ggtcttgttaacgagtgtccctatagcactctttaag 178  Q
    |||||||||||||||||||| || |||||||||||||    
T  27202033 ggtcttgttaacgagtgtccttagagcactctttaag 27202069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 4781066 - 4781170
Alignment:
Q  1 tgattttgtgtctggacttcaagtacgtaaaggaaatgactggatcactgttaagcctgtccctaatgcttttatcatcaacattggtgaccaaattcag 100  Q
    ||||| ||| ||||||||||||||||||| |||| | || |||||||| |||||||||||||| |||||||| |||||||| ||||||||||||||||||    
T  4781066 tgattatgtatctggacttcaagtacgtagaggagaagattggatcacagttaagcctgtcccaaatgctttcatcatcaatattggtgaccaaattcag 4781165  T
Q  101 gtcct 105  Q
    |||||    
T  4781166 gtcct 4781170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 49951800 - 49951742
Alignment:
Q  169 actctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||||||||||||| |||||||  |||||||||||||||||||||||| ||||||||||    
T  49951800 actctttaagcatgctaaattaagtaattattcttttaaaatgtcaaagttttcaattt 49951742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 41462020 - 41462091
Alignment:
Q  144 tcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaa 215  Q
    ||||||||||||||||||||  |||||||||||||||| ||| |||   ||||||||||||||||| |||||    
T  41462020 tcttgttaacgagtgtccctggagcactctttaagcattttatatttagtaattattcttttaaaaagtcaa 41462091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 53622278 - 53622357
Alignment:
Q  146 ttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||||||||||| ||| || ||||||||||| ||| ||||||||  ||||| || ||||||||||||||||||||||||||    
T  53622278 ttgttaacgagtgcccc-at-gcactctttaaacatcttaaattaagtaattttttttttaaaatgtcaaaattttcaattt 53622357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 227
Target Start/End: Complemental strand, 52650834 - 52650742
Alignment:
Q  135 ttttaaaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||||| ||||||||||||||||| | |   | |||||||||| |||| |||||||   |||||||||||  |||||||||||||||||||||    
T  52650834 ttttaagggtcttgttaacgagtgcctccggaacactctttaaacatgctaaattaagaaattattctttacaaatgtcaaaattttcaattt 52650742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 227
Target Start/End: Complemental strand, 23136642 - 23136559
Alignment:
Q  144 tcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||||||||||||||| |   ||||||| ||||| || ||||||||  |||||||||||||||||| | ||| ||||||||||    
T  23136642 tcttgttaacgagtgtctccgaagcactccttaagtatattaaattaagtaattattcttttaaaatttaaaagttttcaattt 23136559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 24546844 - 24546778
Alignment:
Q  142 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaa 209  Q
    ||||||||||||||||| | ||| | ||||||||||||||||||||||||  ||||||||||| ||||    
T  24546844 ggtcttgttaacgagtg-ctctagaacactctttaagcatgttaaattaggaaattattctttaaaaa 24546778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 53261531 - 53261612
Alignment:
Q  146 ttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||||||||||| ||| |   ||||||||||||||| |||||||  |||||||||||| ||||| | ||| ||||||||||    
T  53261531 ttgttaacgagtgcccccaggacactctttaagcatgctaaattaagtaattattctttaaaaatttaaaagttttcaattt 53261612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 215
Target Start/End: Original strand, 8297833 - 8297913
Alignment:
Q  135 ttttaaaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaa 215  Q
    |||||| ||||||||||||||||| |||    |||||||||||||||   |||||   |||||||||||||||||||||||    
T  8297833 ttttaagggtcttgttaacgagtgcccccggggcactctttaagcatcccaaatttagtaattattcttttaaaatgtcaa 8297913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 27963226 - 27963166
Alignment:
Q  168 cactctttaagcatgttaaa-ttagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||||||||  ||||||||| ||| ||||||||||||||||||| | ||||||||||||||    
T  27963226 cactctttacacatgttaaaattaaataattattcttttaaaatattaaaattttcaattt 27963166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 49623057 - 49622998
Alignment:
Q  168 cactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||| ||||||||| ||||||||  |||||||||  | ||||||||||||||||||||||    
T  49623057 cactatttaagcattttaaattaagtaattattccataaaaatgtcaaaattttcaattt 49622998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 2818355 - 2818413
Alignment:
Q  169 actctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||||||||||| ||||||||   |||||||||||||||| |||||||  ||||||||    
T  2818355 actctttaagcattttaaattaagaaattattcttttaaaaggtcaaaaagttcaattt 2818413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 221
Target Start/End: Original strand, 17970804 - 17970858
Alignment:
Q  167 gcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaatttt 221  Q
    |||||||||||||||| |||||||  ||||||||| |||||||| ||||| ||||    
T  17970804 gcactctttaagcatgataaattaagtaattattcatttaaaatatcaaagtttt 17970858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 45743315 - 45743369
Alignment:
Q  173 tttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||||| |||||||||||   ||||||||||| ||||||||||| ||||||||||    
T  45743315 tttaagtatgttaaattaagaaattattctttaaaaatgtcaaagttttcaattt 45743369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 50617492 - 50617550
Alignment:
Q  169 actctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||||||| |||  |||||||  |||||||| ||||||||||||||| ||||||||||    
T  50617492 actctttaaacattataaattaagtaattatttttttaaaatgtcaaacttttcaattt 50617550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 209
Target Start/End: Complemental strand, 24175537 - 24175468
Alignment:
Q  140 aaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaa 209  Q
    |||||||||||||||||||||| ||   ||||||||||||||  ||||||   ||| |||||||||||||    
T  24175537 aaggtcttgttaacgagtgtccttaggacactctttaagcatcctaaatttagtaaatattcttttaaaa 24175468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 227
Target Start/End: Original strand, 47937833 - 47937917
Alignment:
Q  142 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||||||||||||||||| ||   || ||||||||| |||  |||||||  |||||||||||| |||| |||||| ||||||||||    
T  47937833 ggtcttgttaacgagtgtgccgg-agtactctttaaacatactaaattatgtaattattctttaaaaaagtcaaagttttcaattt 47937917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 21241121 - 21241181
Alignment:
Q  167 gcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||||||||| ||||||||||||   ||| ||| ||| ||||| ||||||||||||||||    
T  21241121 gcactctttaaacatgttaaattaagaaatgattttttaaaaatatcaaaattttcaattt 21241181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 32175397 - 32175461
Alignment:
Q  137 ttaaaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattc 201  Q
    |||||||||||||||| |||||||| |   | ||||||||||||| ||||||||  |||||||||    
T  32175397 ttaaaggtcttgttaaagagtgtccatgaggtactctttaagcattttaaattaagtaattattc 32175461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 36876165 - 36876109
Alignment:
Q  171 tctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||||||||||| |||||||  ||| |||||||||||||||| ||  ||||||||||    
T  36876165 tctttaagcatgctaaattaagtaactattcttttaaaatgtaaatgttttcaattt 36876109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 144 - 227
Target Start/End: Complemental strand, 1876617 - 1876534
Alignment:
Q  144 tcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||||||||||||| |||    |||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||    
T  1876617 tcttgttaacgagtgcccccggggcactctttaagcatgctaaattaagtaattattcttttaaaatgtcaaaattttcaattt 1876534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 136 - 227
Target Start/End: Complemental strand, 44220851 - 44220762
Alignment:
Q  136 tttaaaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||||| |||||||||||||||||||   |||||| |  |||||||||||||||  |||||||||||||||||||||||| ||||||||||    
T  44220851 tttaaagttcttgttaacgagtgtccccggagcactat--aagcatgttaaattaagtaattattcttttaaaatgtcaaagttttcaattt 44220762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 148 - 227
Target Start/End: Complemental strand, 2376859 - 2376780
Alignment:
Q  148 gttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||||||||||  ||| |  ||||||||||||| |||||||| ||||||||||||| ||||| ||||| ||||||||||    
T  2376859 gttaacgagtgtttctagaatactctttaagcattttaaattaaataattattctttaaaaatatcaaagttttcaattt 2376780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 31264966 - 31265040
Alignment:
Q  142 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaa 216  Q
    ||||||||||||||||| |||| | |||||||||||||||| ||||||||  | ||||||||| |||| ||||||    
T  31264966 ggtcttgttaacgagtgcccctgtggcactctttaagcatgctaaattaggaagttattctttaaaaaagtcaaa 31265040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 227
Target Start/End: Original strand, 11533227 - 11533286
Alignment:
Q  168 cactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||||||||| ||||||||||||   ||||||||||| ||||||||||| ||||||||||    
T  11533227 cactctttaaacatgttaaattaataaattattctttaaaaatgtcaaagttttcaattt 11533286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 202
Target Start/End: Original strand, 24869383 - 24869443
Alignment:
Q  142 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattct 202  Q
    ||||||||||||||||| |||| | ||||||||||| |||| |||||||  ||||||||||    
T  24869383 ggtcttgttaacgagtgcccctgtggcactctttaaacatgctaaattaagtaattattct 24869443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 181
Target Start/End: Original strand, 40298850 - 40298889
Alignment:
Q  142 ggtcttgttaacgagtgtccctatagcactctttaagcat 181  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  40298850 ggtcttgttaacgagtgtccctatgacactctttaagcat 40298889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 18842365 - 18842307
Alignment:
Q  169 actctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||||||| ||| ||||||||  |||||||||||| ||||||||||| |||| |||||    
T  18842365 actctttaaccattttaaattaagtaattattctttaaaaatgtcaaagtttttaattt 18842307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 209
Target Start/End: Original strand, 25279899 - 25279965
Alignment:
Q  143 gtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaa 209  Q
    |||||||||||||||| |||||   ||||||||||||||| ||||||||  | ||||||||| ||||    
T  25279899 gtcttgttaacgagtgcccctacgacactctttaagcatgctaaattaggaagttattctttaaaaa 25279965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 30158172 - 30158114
Alignment:
Q  169 actctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||||||||||||  ||||||| ||||||||||||| ||||||| ||| |||| |||||    
T  30158172 actctttaagcattctaaattaaataattattctttgaaaatgtaaaagtttttaattt 30158114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 215
Target Start/End: Complemental strand, 27801363 - 27801290
Alignment:
Q  142 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaa 215  Q
    ||||||||||||||||| ||| ||  |||||||||| |||  ||||||   ||||||||||||||||| |||||    
T  27801363 ggtcttgttaacgagtgcccccatgacactctttaatcattctaaatttagtaattattcttttaaaaagtcaa 27801290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 37449541 - 37449594
Alignment:
Q  174 ttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||| ||| ||||||||  |||||||| ||||||||||||||| ||||||||||    
T  37449541 ttaaacattttaaattaagtaattatttttttaaaatgtcaaacttttcaattt 37449594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 12002261 - 12002321
Alignment:
Q  167 gcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||||||||||| ||  |||||||  |||||||||||| ||||||| ||| ||||||||||    
T  12002261 gcactctttaagtatactaaattaagtaattattctttaaaaatgtaaaagttttcaattt 12002321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 144 - 227
Target Start/End: Complemental strand, 33791874 - 33791791
Alignment:
Q  144 tcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||||||||||||||||||| |  |||||||||| ||| |||||||  |||||||||||||||||||||||| ||||||||||    
T  33791874 tcttgttaacgagtgtccctagactactctttaagtatgctaaattaagtaattattcttttaaaatgtcaaatttttcaattt 33791791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 133 - 227
Target Start/End: Original strand, 40053253 - 40053347
Alignment:
Q  133 tattttaaaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||||||  ||||||||||||||||||| |||  ||||| |||||||||  |||||||| ||||| |||||| ||||||||||| ||||||||||    
T  40053253 tattttatgggtcttgttaacgagtgtctctagtgcactttttaagcattctaaattaggtaattgttctttaaaaatgtcaaagttttcaattt 40053347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 132 - 227
Target Start/End: Complemental strand, 35543550 - 35543455
Alignment:
Q  132 atattttaaaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||| ||||||||||||||||||||| |  |  |||||| |||||||||| |||||||  |||||||| ||||||||| ||||| ||||||||||    
T  35543550 atattgtaaaggtcttgttaacgagtgcctttggagcactatttaagcatgctaaattaagtaattatttttttaaaatatcaaagttttcaattt 35543455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 144 - 227
Target Start/End: Original strand, 39973863 - 39973946
Alignment:
Q  144 tcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||||||||||||||| |    |||||||||||||||| |||||||  |||||||||||||||||||| ||| ||||||||||    
T  39973863 tcttgttaacgagtgtctccggggcactctttaagcatgctaaattaagtaattattcttttaaaatgttaaagttttcaattt 39973946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 227
Target Start/End: Original strand, 49478781 - 49478867
Alignment:
Q  142 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaa-ttttcaattt 227  Q
    ||||||||||||||||||| ||  || |||||||||||||||| | |||  |||||||| |||| ||||||||||| ||||||||||    
T  49478781 ggtcttgttaacgagtgtctctggagtactctttaagcatgttgagttaagtaattattttttttaaatgtcaaaagttttcaattt 49478867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 37188633 - 37188576
Alignment:
Q  168 cactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaat 225  Q
    |||||||||||||| |||||||| ||||||||||  | ||||||||||||||||||||    
T  37188633 cactctttaagcattttaaattaaataattattcaataaaaatgtcaaaattttcaat 37188576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 42573881 - 42573821
Alignment:
Q  167 gcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||||||||||||||| |||||||  |||||||||||||||||||| ||  ||||||||||    
T  42573881 gcactctttaagcatgctaaattaagtaattattcttttaaaatgttaaggttttcaattt 42573821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 5423883 - 5423816
Alignment:
Q  142 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaa 209  Q
    |||||||||||||| |||  ||| |||| ||||||||||| |||||||||| ||||||||||| ||||    
T  5423883 ggtcttgttaacgaatgttactagagcattctttaagcattttaaattagaaaattattctttaaaaa 5423816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 227
Target Start/End: Original strand, 48947160 - 48947258
Alignment:
Q  129 tatatattttaaaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||||||| ||  ||| ||||||||||||| ||||   ||| |||||||||||  |||||||  |||||||| ||| ||||||||||| ||||||||||    
T  48947160 tatatattatatgggttttgttaacgagtgcccctggggcattctttaagcatactaaattaagtaattattttttaaaaatgtcaaagttttcaattt 48947258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 227
Target Start/End: Original strand, 3047836 - 3047921
Alignment:
Q  142 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||||||||| ||||| |||    |||||||||||||||| |||||||  ||||| |||||| ||||||||||| ||||| ||||    
T  3047836 ggtcttgttaaagagtgcccccggggcactctttaagcatgctaaattaagtaattgttctttaaaaatgtcaaatttttcgattt 3047921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 34861349 - 34861264
Alignment:
Q  142 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||||||||||||||| |||    |||||||||||||||  |||||||  |||||||| ||| |||||||||||  |||||||||    
T  34861349 ggtcttgttaacgagtgccccgggggcactctttaagcattctaaattaagtaattattttttaaaaatgtcaaacatttcaattt 34861264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 1656446 - 1656490
Alignment:
Q  183 ttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||||||| ||||||||| ||| ||||||||||||||||||||||    
T  1656446 ttaaattaaataattattttttaaaaatgtcaaaattttcaattt 1656490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 290602 - 290645
Alignment:
Q  184 taaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||||||  |||||||||||||||||||||||| ||||||||||    
T  290602 taaattaagtaattattcttttaaaatgtcaaagttttcaattt 290645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 27934839 - 27934781
Alignment:
Q  169 actctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||||||||||||  ||||||| ||||||||| ||| ||||| |||||| |||||||||    
T  27934839 actctttaagcattctaaattaaataattattatttaaaaatatcaaaagtttcaattt 27934781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 33744272 - 33744198
Alignment:
Q  142 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaa 216  Q
    ||||||||| | ||||| ||||  |||||||||||||||| ||||| ||  |||||||| |||||||| ||||||    
T  33744272 ggtcttgtttaggagtgccccttgagcactctttaagcattttaaaataagtaattatttttttaaaaagtcaaa 33744198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 49023 - 48938
Alignment:
Q  142 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||||||||||||||  |||||   ||||| |||| |||| |||||||  |||||||||||  ||||||| ||| ||||||||||    
T  49023 ggtcttgttaacgagttcccctaggacactcgttaatcatgctaaattaagtaattattcttgaaaaatgtaaaagttttcaattt 48938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 227
Target Start/End: Original strand, 16113888 - 16113973
Alignment:
Q  142 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||||||||||||||| | |    |||||||||||||||  || ||||  |||||||| ||| ||||||||||| ||||||||||    
T  16113888 ggtcttgttaacgagtgcctccggggcactctttaagcatactatattaagtaattattttttcaaaatgtcaaagttttcaattt 16113973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 227
Target Start/End: Original strand, 31042970 - 31043055
Alignment:
Q  142 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||||||||||||| ||||||     || |||||||||||  |||||||  |||||||| ||| ||||||||||| ||||||||||    
T  31042970 ggtcttgttaacgaatgtccccggcacagtctttaagcattctaaattaagtaattattttttaaaaatgtcaaagttttcaattt 31043055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 31807917 - 31807832
Alignment:
Q  142 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||||||||||||||| |||   |||||| |||||||||  |||| ||  |||||||||||| ||||||| | | ||||||||||    
T  31807917 ggtcttgttaacgagtgcccccggagcactatttaagcattctaaaataagtaattattctttaaaaatgtgatagttttcaattt 31807832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 51904665 - 51904621
Alignment:
Q  183 ttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||||||  |||||||||||||||||||| ||| ||||||||||    
T  51904665 ttaaattaagtaattattcttttaaaatgttaaagttttcaattt 51904621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 48551013 - 48551094
Alignment:
Q  146 ttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||||||||||||||| | ||||||||||||||||| |||||||   ||||||||||| ||||||||||| ||||||||||    
T  48551013 ttgttaacgagtgtccccagagcactctttaagcatgctaaattaagaaattattctttaaaaatgtcaaagttttcaattt 48551094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 137 - 227
Target Start/End: Original strand, 45757893 - 45757983
Alignment:
Q  137 ttaaaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||| ||||||||||||||||||| |   | |||||||||||||||||||||||   ||||||||||| ||||||||||| ||||||||||    
T  45757893 ttaagggtcttgttaacgagtgtctccggatcactctttaagcatgttaaattaagcaattattctttaaaaatgtcaaagttttcaattt 45757983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 12140145 - 12140199
Alignment:
Q  173 tttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||    
T  12140145 tttaagcatgctaaattaaataattattcttttaaaatgtcaaagttttcaattt 12140199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 227
Target Start/End: Original strand, 24313522 - 24313605
Alignment:
Q  144 tcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||||||||||||||||     ||||||||||| |||  ||||||| | ||||||||||| ||||||||||| ||||||||||    
T  24313522 tcttgttaacgagtgtcctcggggcactctttaaacattctaaattaaacaattattctttaaaaatgtcaaagttttcaattt 24313605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 28692035 - 28691976
Alignment:
Q  168 cactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||||||||| ||| ||||||||  |||||||||||||||||||| ||| ||||||||||    
T  28692035 cactctttaaacatattaaattaagtaattattcttttaaaatgttaaagttttcaattt 28691976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 216
Target Start/End: Complemental strand, 54290920 - 54290840
Alignment:
Q  136 tttaaaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaa 216  Q
    ||||| |||||||||||||||| ||||    |||||||||||||||| ||||||||  | ||||||||| |||| ||||||    
T  54290920 tttaagggtcttgttaacgagtatccccggggcactctttaagcatgataaattaggaagttattctttaaaaaagtcaaa 54290840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 216
Target Start/End: Original strand, 43803936 - 43804012
Alignment:
Q  139 aaaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaa 216  Q
    ||||||||||||||||||||||| |   | |||||||||||||| |||||| || | ||||||||| |||| ||||||    
T  43803936 aaaggtcttgttaacgagtgtcc-tcgggtactctttaagcatgataaattggaaagttattctttaaaaaagtcaaa 43804012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 210
Target Start/End: Complemental strand, 45584432 - 45584395
Alignment:
Q  173 tttaagcatgttaaattagataattattcttttaaaat 210  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  45584432 tttaagcatgttaaattaagtaattattcttttaaaat 45584395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 227
Target Start/End: Complemental strand, 11465761 - 11465677
Alignment:
Q  143 gtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||||||||||||||||||  | | ||||||||||| || || ||| | | ||||||||||| |||| |||||||  ||||||||    
T  11465761 gtcttgttaacgagtgtcctaagaacactctttaaggatttttaataaaaaaattattctttaaaaaagtcaaaaacttcaattt 11465677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 204
Target Start/End: Original strand, 50604020 - 50604084
Alignment:
Q  140 aaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttt 204  Q
    ||||||||||||||||||||| | |  ||||||||||| |||  |||||||  ||||||||||||    
T  50604020 aaggtcttgttaacgagtgtctccagggcactctttaaccattctaaattaagtaattattcttt 50604084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 54911199 - 54911255
Alignment:
Q  171 tctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||||| |||  ||||||| ||||||||||||||||||||| ||| |||| |||||    
T  54911199 tctttaaacattctaaattaaataattattcttttaaaatgttaaagttttaaattt 54911255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 4655072 - 4655013
Alignment:
Q  168 cactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||||||||||||| ||||||||||||||||| ||||||||| ||||| ||||||||||    
T  4655072 cactctttaagcatgctaaattagataattatttttttaaaatatcaaagttttcaattt 4655013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 24389735 - 24389675
Alignment:
Q  167 gcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||||||||||||||| |||||||  ||||||||||||||| |||||||| ||||||||||    
T  24389735 gcactctttaagcatgctaaattaagtaattattcttttaagatgtcaaagttttcaattt 24389675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 9049256 - 9049202
Alignment:
Q  173 tttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||||||||||||||||  |||||||||||||||||||| ||| ||||||||||    
T  9049256 tttaagcatgttaaattaagtaattattcttttaaaatgttaaatttttcaattt 9049202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 226
Target Start/End: Original strand, 21277517 - 21277606
Alignment:
Q  137 ttaaaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatt 226  Q
    ||||||||||||||||||||||   |   | ||||||||||| || ||||||||  |||||||| ||||||||||||||| |||||||||    
T  21277517 ttaaaggtcttgttaacgagtgcttccgcatcactctttaagtattttaaattaagtaattatttttttaaaatgtcaaacttttcaatt 21277606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 227
Target Start/End: Complemental strand, 30869695 - 30869614
Alignment:
Q  144 tcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||||||||||||||| | |  |||||||||||||||| ||||||| ||  ||||||||| ||||||| ||| ||||||||||    
T  30869695 tcttgttaacgagtgtctccagggcactctttaagcatgctaaattaaat--ttattctttaaaaatgttaaagttttcaattt 30869614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 33634909 - 33634850
Alignment:
Q  168 cactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||||||||| ||||||||||| |||||||||| |||||||| | ||| ||||||||||    
T  33634909 cactctttaaggatgttaaattaaataattattcgtttaaaatatgaaagttttcaattt 33634850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 6334805 - 6334724
Alignment:
Q  146 ttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||||||||||||||    | |||||||||| |||| ||||||| | ||||||| ||| ||||||||||| ||||||||||    
T  6334805 ttgttaacgagtgtcctcggaacactctttaaacatgctaaattaaaaaattattttttaaaaatgtcaaagttttcaattt 6334724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 227
Target Start/End: Complemental strand, 6411510 - 6411426
Alignment:
Q  143 gtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||||||||||||||||  | | |||||| ||||| |||| ||||| |  |||||||||||||||||| | ||| ||||||||||    
T  6411510 gtcttgttaacgagtgtttccagagcactttttaaacatgctaaataaagtaattattcttttaaaatttaaaagttttcaattt 6411426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 12848584 - 12848524
Alignment:
Q  167 gcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||||||||||||| ||||||||  ||| |||||||| | ||||||||| ||||||||||    
T  12848584 gcactctttaagcatattaaattaagtaactattctttaataatgtcaaagttttcaattt 12848524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 42342581 - 42342541
Alignment:
Q  187 attagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||| ||||||||||||| ||||||||||||||||||||||    
T  42342581 attaaataattattctttaaaaatgtcaaaattttcaattt 42342541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 221
Target Start/End: Original strand, 3074074 - 3074128
Alignment:
Q  167 gcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaatttt 221  Q
    |||||||||||||||| |||||||  ||||||||| |||||||| ||||| ||||    
T  3074074 gcactctttaagcatgataaattaagtaattattcatttaaaatatcaaagtttt 3074128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 12762981 - 12762923
Alignment:
Q  169 actctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||||||||||| | ||||||  |||||||||||  ||||||| ||||||||||||||    
T  12762981 actctttaagcatttaaaattaagtaattattcttaaaaaatgttaaaattttcaattt 12762923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 32859754 - 32859828
Alignment:
Q  142 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaa 216  Q
    ||||||||||||||||| ||| |  ||||||||||| |||| ||||||||  | ||||||||| |||| ||||||    
T  32859754 ggtcttgttaacgagtgcccccagggcactctttaaacatgctaaattaggaagttattctttaaaaaagtcaaa 32859828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 33454964 - 33455022
Alignment:
Q  169 actctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||||||||||||| |||||||   || |||||||| ||||||||||| ||||||||||    
T  33454964 actctttaagcatgctaaattaagaaactattctttaaaaatgtcaaagttttcaattt 33455022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 227
Target Start/End: Complemental strand, 6084015 - 6083954
Alignment:
Q  166 agcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||||||||||||||  ||||||   |||||||| ||||||||| ||||| ||||||||||    
T  6084015 agcactctttaagcatactaaatttagtaattattattttaaaatatcaaagttttcaattt 6083954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 227
Target Start/End: Complemental strand, 30822833 - 30822772
Alignment:
Q  166 agcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||||||| |||| | ||||||||  |||||||| ||| ||||||||||| ||||||||||    
T  30822833 agcactcttaaagctttttaaattaagtaattattttttgaaaatgtcaaagttttcaattt 30822772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 565830 - 565744
Alignment:
Q  142 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaatta--gataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||||||||||||||||||| | |  |||||||||||||| |||||||   | || |||||||| ||||||| ||| ||||||||||    
T  565830 ggtcttgttaacgagtgtcccgaga-tactctttaagcatgctaaattaagtaaaagtattctttaaaaatgtgaaagttttcaattt 565744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 2826098 - 2826054
Alignment:
Q  137 ttaaaggtcttgttaacgagtgtccctatagcactctttaagcat 181  Q
    |||| |||||||||||||||||||||| | | |||||||||||||    
T  2826098 ttaagggtcttgttaacgagtgtccctgtggtactctttaagcat 2826054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 209
Target Start/End: Original strand, 13538364 - 13538432
Alignment:
Q  142 ggtcttgttaacgagtgtccct-atagcactctttaagcatgttaaattagataattattcttttaaaa 209  Q
    ||||||||||||||||| |||  |  |||||||||||||||  ||||||||| ||||||||||| ||||    
T  13538364 ggtcttgttaacgagtgcccccgagggcactctttaagcatactaaattagaaaattattctttaaaaa 13538432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 13445868 - 13445783
Alignment:
Q  142 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||||||||||||||||||||    |||||||||||||||| |||||||  ||| |||||||| ||||||| ||| ||||||||||    
T  13445868 ggtcttgttaacgagtgtccccggtgcactctttaagcatgctaaattaagtaagtattctttaaaaatgtgaaagttttcaattt 13445783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 209
Target Start/End: Original strand, 1840977 - 1841019
Alignment:
Q  167 gcactctttaagcatgttaaattagataattattcttttaaaa 209  Q
    ||||||||||||||| |||||||  ||||||||||||||||||    
T  1840977 gcactctttaagcatattaaatttaataattattcttttaaaa 1841019  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 227
Target Start/End: Complemental strand, 3753229 - 3753147
Alignment:
Q  145 cttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||||||| |||| |||| |  ||||||||||||||| ||||| |  |||||||||||| ||||| | ||| ||||||||||    
T  3753229 cttgttaacaagtgcccctgtgccactctttaagcatgataaataaagtaattattctttcaaaatttaaaagttttcaattt 3753147  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 227
Target Start/End: Complemental strand, 33970464 - 33970378
Alignment:
Q  141 aggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||||||||||| |||| |||  | | ||||||||||  ||||||||| | ||||||||||||| ||||| | |||||||| |||||    
T  33970464 aggtcttgttaatgagtatcctcaaaacactctttaaatatgttaaataaaataattattctttcaaaatttaaaaatttttaattt 33970378  T

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Target: scaffold0010 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 26695 - 26755
Alignment:
Q  167 gcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||||||||||||||| |||||||  |||||||| ||||||||||||||| ||||||||||    
T  26695 gcactctttaagcatgctaaattaagtaattattattttaaaatgtcaaagttttcaattt 26755  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 38595037 - 38594983
Alignment:
Q  173 tttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||||| ||| |||||||  |||||||||||||||||||||||||||||||||||    
T  38595037 tttaagtatgctaaattaagtaattattcttttaaaatgtcaaaattttcaattt 38594983  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 215
Target Start/End: Original strand, 8208148 - 8208221
Alignment:
Q  142 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaa 215  Q
    ||||||||||||||||||    | |||||||||||||||| ||||||| || |||||||||||||||| |||||    
T  8208148 ggtcttgttaacgagtgttttcagagcactctttaagcattttaaatttgaaaattattcttttaaaaagtcaa 8208221  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 227
Target Start/End: Complemental strand, 34032234 - 34032142
Alignment:
Q  135 ttttaaaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||||| |||||||||||||||||||| |   |||||||||||||||  |||| ||  |||||||||||| |||| || |||  |||||||||    
T  34032234 ttttaagggtcttgttaacgagtgtccttggggcactctttaagcattctaaaataagtaattattctttaaaaaagttaaatatttcaattt 34032142  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 227
Target Start/End: Original strand, 10228288 - 10228372
Alignment:
Q  141 aggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||||||||||||||||||||||  | |||||||||||||| | ||| |  |||||||||||| ||||| | ||| ||||||||||    
T  10228288 aggtcttgttaacgagtgtcccta-ggtactctttaagcatgct-aataaagtaattattctttcaaaatttaaaagttttcaattt 10228372  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 30501278 - 30501204
Alignment:
Q  141 aggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaa 215  Q
    |||||||||||||||||| ||| |  |||||||||||||||   |||||   ||||||||||||||||| |||||    
T  30501278 aggtcttgttaacgagtgcccccagggcactctttaagcatcccaaatttagtaattattcttttaaaaagtcaa 30501204  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 30541621 - 30541547
Alignment:
Q  141 aggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaa 215  Q
    |||||||||||||||||| ||| |  |||||||||||||||   |||||   ||||||||||||||||| |||||    
T  30541621 aggtcttgttaacgagtgcccccagggcactctttaagcatcccaaatttagtaattattcttttaaaaagtcaa 30541547  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 21259523 - 21259470
Alignment:
Q  174 ttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||| ||||||||||| | ||||||||||| || ||||||||||||| |||||    
T  21259523 ttaagaatgttaaattaaaaaattattctttaaagatgtcaaaatttttaattt 21259470  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 27325917 - 27325876
Alignment:
Q  186 aattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||||| |||||||||||| ||||||||||| ||||||||||    
T  27325917 aattaggtaattattctttaaaaatgtcaaacttttcaattt 27325876  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 10051700 - 10051744
Alignment:
Q  143 gtcttgttaacgagtgtccctatagcactctttaagcatgttaaa 187  Q
    ||||||||||||||||||||||  |||||||||||| || |||||    
T  10051700 gtcttgttaacgagtgtccctaaggcactctttaaggattttaaa 10051744  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 14309195 - 14309139
Alignment:
Q  171 tctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||||||||| ||||||||  || ||||||||| ||||| ||||| ||||||||||    
T  14309195 tctttaagcatattaaattaagtagttattctttaaaaatatcaaagttttcaattt 14309139  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 39335665 - 39335709
Alignment:
Q  168 cactctttaagcatgttaaattagataattattcttttaaaatgt 212  Q
    |||||||||| ||| |||||||| ||||||||||||| |||||||    
T  39335665 cactctttaaacattttaaattaaataattattctttaaaaatgt 39335709  T

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Target: scaffold0053 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 5756 - 5816
Alignment:
Q  167 gcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||||||||||| || ||||||||  ||||| |||||| ||||||||||| ||||||||||    
T  5756 gcactctttaagaattttaaattaagtaatttttctttaaaaatgtcaaagttttcaattt 5816  T

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