View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8427_high_3 (Length: 570)
Name: NF8427_high_3
Description: NF8427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8427_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 18 - 556
Target Start/End: Original strand, 54473729 - 54474265
Alignment:
| Q |
18 |
acatttttatggatgaatccgtagagagaactcaaattcgaatatggcgagaatattcattgaccagaatttaccctcttccccccaaaaactagagg-t |
116 |
Q |
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| T |
54473729 |
acatttttatggatgaatccgtagagagaactcaaattcgaatatggcgagaatattcattgaccagaatttaccctcttccccccaaaaactagagggt |
54473828 |
T |
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| Q |
117 |
taagcccgaaaaactaacattatcattaataacttgttcaaacaataacctgcaggtcaccctagaatcattcaccgagacatcaagggtgcaaacattc |
216 |
Q |
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| T |
54473829 |
taagcccgaaaaactaacattatcattaataacttgttcaaacaataacctgcaggtcaccctagaatcattcaccgagacatcaagggtgcaaacattc |
54473928 |
T |
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| Q |
217 |
taattgaaaacaactttgaagccaaagtacgtataatgatcatttactatatgtttagttattaaagaattgtaattatcaagtgattctatccatttag |
316 |
Q |
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| T |
54473929 |
taattgaaaacaactttgaagccaaagtacgtataatgatcatttactatatgtttagttattaaagaattgtaattatcaagtgattctatccatttag |
54474028 |
T |
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| Q |
317 |
gtggcagattttggattggcaaaatttactcaagacactaacactcatgtttctactcgtgtgatgggaacatttgggtaattaaccaataataattcaa |
416 |
Q |
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| T |
54474029 |
gtggcagattttggattggcaaaatttactcaagacactaacactcatgtttctactcgtgtgatgggaacatttgggtaatta---aataataattcaa |
54474125 |
T |
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| Q |
417 |
cccaaactatatacatttatttatgtatgaatcttttgcaaattccaaataatttctacctacttgtatatggctatcaattcaggtatatggctcctga |
516 |
Q |
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| T |
54474126 |
cccaaactatatacatttatttatgtatgaatcttttgcaaattccaaataatttctacctacttgtatatggctatcaattcaggtatatggctcctga |
54474225 |
T |
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| Q |
517 |
gtatgcatcaagtggtaagctaactgataaatctgatgtc |
556 |
Q |
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| T |
54474226 |
gtatgcatcaagtggtaagctaactgataaatctgatgtc |
54474265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 399
Target Start/End: Complemental strand, 33145136 - 33145051
Alignment:
| Q |
314 |
taggtggcagattttggattggcaaaatttactcaagacactaacactcatgtttctactcgtgtgatgggaacatttgggtaatt |
399 |
Q |
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| T |
33145136 |
taggtggctgattttggattggctaagttgactaccgatactaatacacatgtctcaactcgtgtcatgggaacattcgggtaatt |
33145051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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